Guide to the Human Genome
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Name: LIMK2 Sequence: fasta or formatted (686aa) NCBI GI: 73390140
Description:

LIM domain kinase 2 isoform 1

Referenced in:

LIM Domain Proteins
Serine / Threonine Protein Phosphatases

Other entries for this name:
alt prot [638aa] LIM domain kinase 2 isoform 2a
alt prot [617aa] LIM domain kinase 2 isoform 2b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         37           2
 C cysteine            3.5         24           2
 D aspartate           5.7         39           2
 E glutamate           7.9         54           3
 F phenylalanine       3.9         27           2
 G glycine             5.7         39           2
 H histidine           2.5         17           1
 I isoleucine          4.8         33           2
 K lysine              6.9         47           2
 L leucine            10.2         70           2
 M methionine          2.8         19           1
 N asparagine          2.9         20           2
 P proline             5.5         38           2
 Q glutamine           3.4         23           2
 R arginine            6.3         43           3
 S serine              7.1         49           3
 T threonine           5.2         36           2
 V valine              6.1         42           3
 W tryptophan          1.0          7           1
 Y tyrosine            3.2         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LIM domain kinase 2 isoform 1 
LIMK2                 0.830   LIM domain kinase 2 isoform 2b 
LIMK2                 0.806   LIM domain kinase 2 isoform 2a 
LIMK1                 0.441   LIM domain kinase 1 
TESK1                 0.144   testis-specific protein kinase 1 
LOC100293737          0.139   PREDICTED: similar to protein phosphatase 1 regulat...
PPP1R14B              0.139   protein phosphatase 1 regulatory subunit 14B 
TESK2                 0.128   testis-specific protein kinase 2 
PPP1R14C              0.081   protein phosphatase 1, regulatory (inhibitor) subuni...
EPHA5                 0.067   ephrin receptor EphA5 isoform b precursor 
EPHA5                 0.067   ephrin receptor EphA5 isoform a precursor 
EPHA3                 0.067   ephrin receptor EphA3 isoform a precursor 
EPHB1                 0.065   ephrin receptor EphB1 precursor 
FER                   0.065   fer (fps/fes related) tyrosine kinase 
EPHB2                 0.064   ephrin receptor EphB2 isoform 1 precursor 
EPHB2                 0.064   ephrin receptor EphB2 isoform 2 precursor 
EPHA4                 0.062   ephrin receptor EphA4 
EPHB3                 0.062   ephrin receptor EphB3 precursor 
STK10                 0.061   serine/threonine kinase 10 
EPHA8                 0.061   ephrin receptor EphA8 isoform 1 precursor 
EPHA7                 0.061   ephrin receptor EphA7 
MAP3K12               0.060   mitogen-activated protein kinase kinase kinase 12 [H...
EPHA2                 0.060   ephrin receptor EphA2 
EPHB4                 0.060   EPH receptor B4 precursor 
STK4                  0.059   serine/threonine kinase 4 
FES                   0.059   feline sarcoma oncogene isoform 4 
FES                   0.059   feline sarcoma oncogene isoform 3 
SLK                   0.059   serine/threonine kinase 2 
FES                   0.059   feline sarcoma oncogene isoform 2 
FES                   0.059   feline sarcoma oncogene isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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