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Search of human proteins with 239755501
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755501 PREDICTED: hypothetical protein [Homo sapiens]
(139 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755501 PREDICTED: hypothetical protein [Homo sapiens] 303 2e-83
gi|239750029 PREDICTED: hypothetical protein XP_002347239 [Homo ... 303 2e-83
gi|239744340 PREDICTED: hypothetical protein XP_002343099 [Homo ... 303 2e-83
gi|226817316 SH3 domain containing 20 [Homo sapiens] 32 0.22
gi|59889558 neurotrophic tyrosine kinase, receptor, type 1 isofo... 31 0.28
gi|4585712 neurotrophic tyrosine kinase, receptor, type 1 isofor... 31 0.28
gi|239757272 PREDICTED: hypothetical protein [Homo sapiens] 31 0.37
gi|239751775 PREDICTED: hypothetical protein [Homo sapiens] 31 0.37
gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo ... 31 0.37
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 30 0.63
gi|169211692 PREDICTED: CMT1A duplicated region transcript 15-li... 30 0.63
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 30 0.63
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 30 0.63
gi|89041220 PREDICTED: CMT1A duplicated region transcript 15-lik... 30 0.63
gi|134031945 SCO-spondin [Homo sapiens] 30 0.63
gi|58761508 midnolin [Homo sapiens] 30 0.63
gi|40385873 G protein-coupled receptor 150 [Homo sapiens] 30 0.63
gi|169204828 PREDICTED: hypothetical protein [Homo sapiens] 30 0.83
gi|239754229 PREDICTED: hypothetical protein [Homo sapiens] 30 0.83
gi|169205567 PREDICTED: hypothetical protein [Homo sapiens] 30 0.83
gi|239748761 PREDICTED: hypothetical protein XP_002346789 [Homo ... 30 0.83
gi|239742806 PREDICTED: hypothetical protein XP_002342653 [Homo ... 30 0.83
gi|27597061 ubiquitin protein ligase E3 component n-recognin 2 [... 30 0.83
gi|144922631 tigger transposable element derived 5 [Homo sapiens] 30 0.83
gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens] 29 1.1
gi|169204182 PREDICTED: hypothetical protein [Homo sapiens] 29 1.1
gi|188536047 SWI/SNF-related matrix-associated actin-dependent r... 29 1.1
gi|109638745 transforming growth factor beta 1 induced transcrip... 29 1.1
gi|21361591 transforming growth factor beta 1 induced transcript... 29 1.1
gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom... 29 1.1
>gi|239755501 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 303 bits (777), Expect = 2e-83
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MATSENIHGEGQGQAWLWSGPAEYLGVSQGKWLGIMASALCRSTFLSADNVEPSPPPPTP 60
MATSENIHGEGQGQAWLWSGPAEYLGVSQGKWLGIMASALCRSTFLSADNVEPSPPPPTP
Sbjct: 1 MATSENIHGEGQGQAWLWSGPAEYLGVSQGKWLGIMASALCRSTFLSADNVEPSPPPPTP 60
Query: 61 TSMGKERGLSWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLWPGAAPCPAGCCLAAGGG 120
TSMGKERGLSWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLWPGAAPCPAGCCLAAGGG
Sbjct: 61 TSMGKERGLSWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLWPGAAPCPAGCCLAAGGG 120
Query: 121 KSCWCCQGVLARNELPGQP 139
KSCWCCQGVLARNELPGQP
Sbjct: 121 KSCWCCQGVLARNELPGQP 139
>gi|239750029 PREDICTED: hypothetical protein XP_002347239 [Homo
sapiens]
Length = 139
Score = 303 bits (777), Expect = 2e-83
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MATSENIHGEGQGQAWLWSGPAEYLGVSQGKWLGIMASALCRSTFLSADNVEPSPPPPTP 60
MATSENIHGEGQGQAWLWSGPAEYLGVSQGKWLGIMASALCRSTFLSADNVEPSPPPPTP
Sbjct: 1 MATSENIHGEGQGQAWLWSGPAEYLGVSQGKWLGIMASALCRSTFLSADNVEPSPPPPTP 60
Query: 61 TSMGKERGLSWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLWPGAAPCPAGCCLAAGGG 120
TSMGKERGLSWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLWPGAAPCPAGCCLAAGGG
Sbjct: 61 TSMGKERGLSWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLWPGAAPCPAGCCLAAGGG 120
Query: 121 KSCWCCQGVLARNELPGQP 139
KSCWCCQGVLARNELPGQP
Sbjct: 121 KSCWCCQGVLARNELPGQP 139
>gi|239744340 PREDICTED: hypothetical protein XP_002343099 [Homo
sapiens]
Length = 139
Score = 303 bits (777), Expect = 2e-83
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MATSENIHGEGQGQAWLWSGPAEYLGVSQGKWLGIMASALCRSTFLSADNVEPSPPPPTP 60
MATSENIHGEGQGQAWLWSGPAEYLGVSQGKWLGIMASALCRSTFLSADNVEPSPPPPTP
Sbjct: 1 MATSENIHGEGQGQAWLWSGPAEYLGVSQGKWLGIMASALCRSTFLSADNVEPSPPPPTP 60
Query: 61 TSMGKERGLSWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLWPGAAPCPAGCCLAAGGG 120
TSMGKERGLSWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLWPGAAPCPAGCCLAAGGG
Sbjct: 61 TSMGKERGLSWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLWPGAAPCPAGCCLAAGGG 120
Query: 121 KSCWCCQGVLARNELPGQP 139
KSCWCCQGVLARNELPGQP
Sbjct: 121 KSCWCCQGVLARNELPGQP 139
>gi|226817316 SH3 domain containing 20 [Homo sapiens]
Length = 263
Score = 31.6 bits (70), Expect = 0.22
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 75 PGLTMCLLQESLAPVLAGASLSWTGRPLWPGAAPCPAGCCLAAGGGKSC-----WCCQGV 129
PGL CL APV SL+ L A PAG ++G K+C W C
Sbjct: 137 PGLPACLYLRPAAPVRPAQSLN----DLACAAVSPPAGLLGSSGSFKACSVAGSWVCPRP 192
Query: 130 LARNE 134
LAR++
Sbjct: 193 LARSD 197
>gi|59889558 neurotrophic tyrosine kinase, receptor, type 1 isoform
1 [Homo sapiens]
Length = 790
Score = 31.2 bits (69), Expect = 0.28
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 17/68 (25%)
Query: 70 SWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLWPGAAPCPAGCCLAAGGGKSCWCCQGV 129
SWA PG + L +LA A GAAPCP CC G C +
Sbjct: 14 SWAAGPGSLLAWL------ILASA-----------GAAPCPDACCPHGSSGLRCTRDGAL 56
Query: 130 LARNELPG 137
+ + LPG
Sbjct: 57 DSLHHLPG 64
>gi|4585712 neurotrophic tyrosine kinase, receptor, type 1 isoform 2
[Homo sapiens]
Length = 796
Score = 31.2 bits (69), Expect = 0.28
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 17/68 (25%)
Query: 70 SWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLWPGAAPCPAGCCLAAGGGKSCWCCQGV 129
SWA PG + L +LA A GAAPCP CC G C +
Sbjct: 14 SWAAGPGSLLAWL------ILASA-----------GAAPCPDACCPHGSSGLRCTRDGAL 56
Query: 130 LARNELPG 137
+ + LPG
Sbjct: 57 DSLHHLPG 64
>gi|239757272 PREDICTED: hypothetical protein [Homo sapiens]
Length = 314
Score = 30.8 bits (68), Expect = 0.37
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 53 PSPPPPTPTSMGKERGLSWAGLPGLTM-CLLQESLAPVLAGASLSWTGRPLWPGAAP 108
P PPPP+ KE + GL + +L L P A + + P W GA P
Sbjct: 10 PPPPPPSEALAAKELEAAGGAKEGLDLKVILHSRLRPDSESAGWAISPSPAWGGAPP 66
>gi|239751775 PREDICTED: hypothetical protein [Homo sapiens]
Length = 314
Score = 30.8 bits (68), Expect = 0.37
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 53 PSPPPPTPTSMGKERGLSWAGLPGLTM-CLLQESLAPVLAGASLSWTGRPLWPGAAP 108
P PPPP+ KE + GL + +L L P A + + P W GA P
Sbjct: 10 PPPPPPSEALAAKELEAAGGAKEGLDLKVILHSRLRPDSESAGWAISPSPAWGGAPP 66
>gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo
sapiens]
Length = 314
Score = 30.8 bits (68), Expect = 0.37
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 53 PSPPPPTPTSMGKERGLSWAGLPGLTM-CLLQESLAPVLAGASLSWTGRPLWPGAAP 108
P PPPP+ KE + GL + +L L P A + + P W GA P
Sbjct: 10 PPPPPPSEALAAKELEAAGGAKEGLDLKVILHSRLRPDSESAGWAISPSPAWGGAPP 66
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 30.0 bits (66), Expect = 0.63
Identities = 28/79 (35%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 53 PSPPPPTPTSMGKERGLSWAGLPGLTMCLLQESL--APVLAGASLSWTGRPLWPGAAPCP 110
P PPPP P + + G A +SL A V+A ASLS L AA
Sbjct: 285 PPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGG 344
Query: 111 AGCCLAAGGGKSCWCCQGV 129
AG GGG C GV
Sbjct: 345 AG---TGGGGAGGGCVAGV 360
>gi|169211692 PREDICTED: CMT1A duplicated region transcript 15-like
1 [Homo sapiens]
Length = 110
Score = 30.0 bits (66), Expect = 0.63
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 21/74 (28%)
Query: 55 PPPPTPTSMGKERGLSWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLWP-GAA----PC 109
P P TP ++ K+ G PG A SW G + P GAA PC
Sbjct: 7 PSPQTPVALCKKAHPGTTGQPG----------------AGPSWPGHTIDPIGAASVHCPC 50
Query: 110 PAGCCLAAGGGKSC 123
P G A GG +C
Sbjct: 51 PGGDSGAHGGTDTC 64
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 30.0 bits (66), Expect = 0.63
Identities = 28/79 (35%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 53 PSPPPPTPTSMGKERGLSWAGLPGLTMCLLQESL--APVLAGASLSWTGRPLWPGAAPCP 110
P PPPP P + + G A +SL A V+A ASLS L AA
Sbjct: 285 PPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGG 344
Query: 111 AGCCLAAGGGKSCWCCQGV 129
AG GGG C GV
Sbjct: 345 AG---TGGGGAGGGCVAGV 360
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 30.0 bits (66), Expect = 0.63
Identities = 28/79 (35%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 53 PSPPPPTPTSMGKERGLSWAGLPGLTMCLLQESL--APVLAGASLSWTGRPLWPGAAPCP 110
P PPPP P + + G A +SL A V+A ASLS L AA
Sbjct: 285 PPPPPPPPPPLAELAGAPHAHHKRPRFDDDDDSLQEAAVVAAASLSAAAASLSVAAASGG 344
Query: 111 AGCCLAAGGGKSCWCCQGV 129
AG GGG C GV
Sbjct: 345 AG---TGGGGAGGGCVAGV 360
>gi|89041220 PREDICTED: CMT1A duplicated region transcript 15-like 1
[Homo sapiens]
Length = 110
Score = 30.0 bits (66), Expect = 0.63
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 21/74 (28%)
Query: 55 PPPPTPTSMGKERGLSWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLWP-GAA----PC 109
P P TP ++ K+ G PG A SW G + P GAA PC
Sbjct: 7 PSPQTPVALCKKAHPGTTGQPG----------------AGPSWPGHTIDPIGAASVHCPC 50
Query: 110 PAGCCLAAGGGKSC 123
P G A GG +C
Sbjct: 51 PGGDSGAHGGTDTC 64
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 30.0 bits (66), Expect = 0.63
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 68 GLSWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLWPGAAPCPAGCCLAAG--------- 118
G + A LPG Q P + + +G ++ APCP C +G
Sbjct: 1783 GRTCAALPGGLHSTRQTKPCPQDGCPNATCSGELMFQPCAPCPLTCDDISGQVTCPPDWP 1842
Query: 119 -GGKSCWCCQGVLARNE 134
G CWC +G + +E
Sbjct: 1843 CGSPGCWCPEGQVLGSE 1859
>gi|58761508 midnolin [Homo sapiens]
Length = 468
Score = 30.0 bits (66), Expect = 0.63
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 38 SALCRSTFLSADNVEPSPPPPTPTSMGKERGLSWAGLPGLTMCLLQESLAPVLAGASLSW 97
S+ CR SA V P P P+P S S+ T C Q +P + ++
Sbjct: 189 SSPCRPVS-SAARVPPVPTSPSPASPSPITAGSFRSHAASTTCPEQMDCSPTASSSASPG 247
Query: 98 TGRPLWPGAAPCP 110
PGA+P P
Sbjct: 248 ASTTSTPGASPAP 260
>gi|40385873 G protein-coupled receptor 150 [Homo sapiens]
Length = 434
Score = 30.0 bits (66), Expect = 0.63
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 32 WLGIMASALCRSTFLSADNVEPSPPPPTPTSMGKERGLSWAGLPGLTMC 80
WL + AL + + D+ P PPPP PTS+ + PG C
Sbjct: 169 WLLALLLALPPAFVVRGDSPSPLPPPPPPTSLQPGAPPAARAWPGERRC 217
>gi|169204828 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 29.6 bits (65), Expect = 0.83
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 78 TMCLLQESLAPVLAGASLSWTGRPL-WPGAAP-CP-AGCCLAAGGGKSCWCC 126
T+ +L++ + L G S T PL W G+A CP CC CWCC
Sbjct: 119 TVFMLEKCSSLSLTGGSRLATAGPLGWDGSAGPCPGCCCCCCCCCCCCCWCC 170
>gi|239754229 PREDICTED: hypothetical protein [Homo sapiens]
Length = 513
Score = 29.6 bits (65), Expect = 0.83
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 42 RSTFLSADNVEPSPPPPTPTSMGKERGL---SWAGLPGLTMCLLQESLAPVLAGASLSWT 98
+++F S + P+P P+P++ K L S + L L S +PVL+ S +
Sbjct: 137 QASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSS 196
Query: 99 GRPLWPGAAPCPAGCCLAAGGGKSC 123
G W PC + C A +C
Sbjct: 197 GS--WLSPRPCSSRCTGEAVSAVAC 219
>gi|169205567 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 29.6 bits (65), Expect = 0.83
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 78 TMCLLQESLAPVLAGASLSWTGRPL-WPGAAP-CP-AGCCLAAGGGKSCWCC 126
T+ +L++ + L G S T PL W G+A CP CC CWCC
Sbjct: 119 TVFMLEKCSSLSLTGGSRLATAGPLGWDGSAGPCPGCCCCCCCCCCCCCWCC 170
>gi|239748761 PREDICTED: hypothetical protein XP_002346789 [Homo
sapiens]
Length = 513
Score = 29.6 bits (65), Expect = 0.83
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 42 RSTFLSADNVEPSPPPPTPTSMGKERGL---SWAGLPGLTMCLLQESLAPVLAGASLSWT 98
+++F S + P+P P+P++ K L S + L L S +PVL+ S +
Sbjct: 137 QASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSS 196
Query: 99 GRPLWPGAAPCPAGCCLAAGGGKSC 123
G W PC + C A +C
Sbjct: 197 GS--WLSPRPCSSRCTGEAVSAVAC 219
>gi|239742806 PREDICTED: hypothetical protein XP_002342653 [Homo
sapiens]
Length = 513
Score = 29.6 bits (65), Expect = 0.83
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 42 RSTFLSADNVEPSPPPPTPTSMGKERGL---SWAGLPGLTMCLLQESLAPVLAGASLSWT 98
+++F S + P+P P+P++ K L S + L L S +PVL+ S +
Sbjct: 137 QASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLLDASSSAPSASPVLSSVPCSSS 196
Query: 99 GRPLWPGAAPCPAGCCLAAGGGKSC 123
G W PC + C A +C
Sbjct: 197 GS--WLSPRPCSSRCTGEAVSAVAC 219
>gi|27597061 ubiquitin protein ligase E3 component n-recognin 2 [Homo
sapiens]
Length = 1755
Score = 29.6 bits (65), Expect = 0.83
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 34 GIMASALCRSTFLSADNVEPSPPP-PTPTSMGKERGLSWAGLPGLTMCLLQES 85
GIM C + F N PSPP P + E S+ LP +CL QE+
Sbjct: 1511 GIMPFLKCSALFFHYLNGVPSPPDIQVPGTSHFEHLCSYLSLPNNLICLFQEN 1563
>gi|144922631 tigger transposable element derived 5 [Homo sapiens]
Length = 593
Score = 29.6 bits (65), Expect = 0.83
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 53 PSPPPPTPTSMGKERGLSWAGLPGLTMCLLQESLAPVLAGASLSWTGRPLWPGAAPC 109
P+PPPP G E+ S A + GL LL E AP AG PGA C
Sbjct: 172 PAPPPPAEGGYGDEQIYS-ASVTGLYWKLLPEQAAPPGAGD----------PGAGGC 217
>gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens]
Length = 345
Score = 29.3 bits (64), Expect = 1.1
Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 21 PAEYLGVSQGKWLGIMASALCRSTFLSADNVEPSPPPPTPTSMGKERG 68
PAEY VS G+ LG AL F A P PPPP P + E G
Sbjct: 134 PAEYGYVSLGR-LGAAKGALHPGCF--APLHPPPPPPPPPAELKAEPG 178
>gi|169204182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 29.3 bits (64), Expect = 1.1
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 78 TMCLLQESLAPVLAGASLSWTGRPL-WPGAAP-CP--AGCCLAAGGGKSCWCC 126
T+ +L++ + L G S T PL W G+A CP CC CWCC
Sbjct: 119 TVFMLEKCSSLSLTGGSRLATAGPLGWDGSAGPCPGCCCCCCCCCCCCCCWCC 171
>gi|188536047 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c1 [Homo sapiens]
Length = 1105
Score = 29.3 bits (64), Expect = 1.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 53 PSPPPPTPTSMGKERG 68
PSPPPPTPT K+ G
Sbjct: 329 PSPPPPTPTESRKKSG 344
>gi|109638745 transforming growth factor beta 1 induced transcript 1
isoform 1 [Homo sapiens]
Length = 461
Score = 29.3 bits (64), Expect = 1.1
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 37 ASALCRSTFLSADNVEPSPPPPTPTSMGK--------ERGLSWAGLPGLTMCLLQESLAP 88
AS + +S+ N E SP PP PT G + LS G+P L P
Sbjct: 176 ASGPTQPPVVSSTN-EGSPSPPEPTGKGSLDTMLGLLQSDLSRRGVPTQAKGLCGSCNKP 234
Query: 89 VLAGASLSWTGRPLWPGAAPCPAGCCLAAGG 119
+ AG ++ GR P C GC A GG
Sbjct: 235 I-AGQVVTALGRAWHPEHFVC-GGCSTALGG 263
>gi|21361591 transforming growth factor beta 1 induced transcript 1
isoform 2 [Homo sapiens]
Length = 444
Score = 29.3 bits (64), Expect = 1.1
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 37 ASALCRSTFLSADNVEPSPPPPTPTSMGK--------ERGLSWAGLPGLTMCLLQESLAP 88
AS + +S+ N E SP PP PT G + LS G+P L P
Sbjct: 159 ASGPTQPPVVSSTN-EGSPSPPEPTGKGSLDTMLGLLQSDLSRRGVPTQAKGLCGSCNKP 217
Query: 89 VLAGASLSWTGRPLWPGAAPCPAGCCLAAGG 119
+ AG ++ GR P C GC A GG
Sbjct: 218 I-AGQVVTALGRAWHPEHFVC-GGCSTALGG 246
>gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo
sapiens]
Length = 999
Score = 29.3 bits (64), Expect = 1.1
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 14/100 (14%)
Query: 14 QAWLWSGPAEYLGVSQGKWLGIMASALCRSTFLSADNVEPSPPPPTPT----SMGKERGL 69
QA LW +G S+G G R+ AD PSPPPP T + G G
Sbjct: 21 QARLWKNLQLGVGRSKGGGGGRAGGPERRT----ADTPSPSPPPPVGTGNAPARGSGAGS 76
Query: 70 SWAGLPGLTMCL--LQESLAPVLAGASLSWTGRPLWPGAA 107
W+G L + S P L +S PL PG A
Sbjct: 77 RWSGFKKRKQVLDRVFSSSQPNLCCSS----PEPLEPGGA 112
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,749,527
Number of Sequences: 37866
Number of extensions: 433444
Number of successful extensions: 2946
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 2825
Number of HSP's gapped (non-prelim): 220
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.