Guide to the Human Genome
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Name: LOC100293408 Sequence: fasta or formatted (314aa) NCBI GI: 239757272
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         38           3
 C cysteine            1.6          5           1
 D aspartate           2.9          9           1
 E glutamate           5.4         17           1
 F phenylalanine       2.2          7           1
 G glycine            19.1         60           5
 H histidine           0.6          2           1
 I isoleucine          2.2          7           1
 K lysine              1.9          6           1
 L leucine             5.1         16           1
 M methionine          1.0          3           1
 N asparagine          1.0          3           1
 P proline            10.5         33           7
 Q glutamine           1.0          3           1
 R arginine           11.5         36           3
 S serine             10.5         33           3
 T threonine           3.2         10           1
 V valine              5.1         16           1
 W tryptophan          3.2         10           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289362          1.000   PREDICTED: hypothetical protein 
LOC100289362          1.000   PREDICTED: hypothetical protein XP_002343719 
AGAP2                 0.043   centaurin, gamma 1 isoform PIKE-L 
KRT1                  0.040   keratin 1 
KRT9                  0.038   keratin 9 
KRT10                 0.037   keratin 10 
KRT2                  0.035   keratin 2 
LOR                   0.035   loricrin 
ALPK3                 0.032   alpha-kinase 3 
FAM98B                0.030   family with sequence similarity 98, member B isofor...
PRR12                 0.030   proline rich 12 
IRS4                  0.025   insulin receptor substrate 4 
LOC100292062          0.025   PREDICTED: hypothetical protein XP_002346314 
FAM98A                0.025   hypothetical protein LOC25940 
KRT24                 0.024   keratin 24 
LOC100132369          0.024   PREDICTED: hypothetical protein 
LOC100132369          0.024   PREDICTED: hypothetical protein 
LOC100132369          0.024   PREDICTED: hypothetical protein 
KRT5                  0.024   keratin 5 
HNRNPA0               0.024   heterogeneous nuclear ribonucleoprotein A0 
ARID1B                0.024   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.024   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.024   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
LOC100290709          0.022   PREDICTED: hypothetical protein XP_002346752 
KRT76                 0.022   keratin 76 
SIRT1                 0.022   sirtuin 1 isoform a 
LOC100133305          0.022   PREDICTED: hypothetical protein 
LOC100133305          0.022   PREDICTED: hypothetical protein 
GAR1                  0.022   nucleolar protein family A, member 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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