Guide to the Human Genome
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Name: UBR2 Sequence: fasta or formatted (1755aa) NCBI GI: 27597061
Description:

ubiquitin protein ligase E3 component n-recognin 2

Referenced in:

Ubiquitin and Related Protein Modifications
Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         97           3
 C cysteine            3.4         60           2
 D aspartate           4.4         78           2
 E glutamate           8.4        147           4
 F phenylalanine       4.3         76           2
 G glycine             4.9         86           4
 H histidine           3.5         62           1
 I isoleucine          5.1         89           3
 K lysine              5.2         91           2
 L leucine            10.8        189           3
 M methionine          3.2         57           2
 N asparagine          3.2         56           2
 P proline             5.0         87           3
 Q glutamine           5.4         95           2
 R arginine            5.2         91           2
 S serine              7.3        128           2
 T threonine           5.0         87           2
 V valine              5.9        103           2
 W tryptophan          1.3         22           1
 Y tyrosine            3.1         54           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin protein ligase E3 component n-recognin 2 [... 
UBR1                  0.456   ubiquitin protein ligase E3 component n-recognin 1 [...
UBR3                  0.036   E3 ubiquitin-protein ligase UBR3 
KIAA1598              0.004   shootin1 isoform a 
PHACTR2               0.003   phosphatase and actin regulator 2 isoform 4 
PHACTR2               0.003   phosphatase and actin regulator 2 isoform 3 
PHACTR2               0.003   phosphatase and actin regulator 2 isoform 2 
PHACTR2               0.003   phosphatase and actin regulator 2 isoform 1 
KIAA1598              0.003   shootin1 isoform b 
MAP7D1                0.003   MAP7 domain containing 1 
LMNB2                 0.003   lamin B2 
LOC730429             0.003   PREDICTED: similar to ubiquitin protein ligase E3 c...
LOC730429             0.003   PREDICTED: similar to ubiquitin protein ligase E3 c...
STMN2                 0.003   superiorcervical ganglia, neural specific 10 
GOLGA4                0.003   golgi autoantigen, golgin subfamily a, 4 
MYO18A                0.003   myosin 18A isoform b 
MYO18A                0.003   myosin 18A isoform a 
AARS                  0.002   alanyl-tRNA synthetase 
ANKRD12               0.002   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.002   ankyrin repeat domain 12 isoform 1 
MSN                   0.002   moesin 
SRRM2                 0.002   splicing coactivator subunit SRm300 
KRTAP10-10            0.002   keratin associated protein 10-10 
FKBP15                0.002   FK506 binding protein 15, 133kDa 
ARNT                  0.002   aryl hydrocarbon receptor nuclear translocator isofo...
ARNT                  0.002   aryl hydrocarbon receptor nuclear translocator isofor...
DCLK1                 0.002   doublecortin-like kinase 1 
ITSN1                 0.002   intersectin 1 isoform ITSN-s 
ITSN1                 0.002   intersectin 1 isoform ITSN-l 
MYL9                  0.002   myosin regulatory light chain 9 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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