Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NTRK1 Sequence: fasta or formatted (796aa) NCBI GI: 4585712
Description:

neurotrophic tyrosine kinase, receptor, type 1 isoform 2

Referenced in:

Receptor Tyrosine Kinases

Other entries for this name:
alt prot [760aa] neurotrophic tyrosine kinase, receptor, type 1 isoform 3
alt prot [790aa] neurotrophic tyrosine kinase, receptor, type 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         63           2
 C cysteine            2.6         21           2
 D aspartate           4.0         32           2
 E glutamate           6.0         48           3
 F phenylalanine       4.1         33           2
 G glycine             9.0         72           2
 H histidine           3.5         28           2
 I isoleucine          2.9         23           2
 K lysine              2.8         22           2
 L leucine            12.8        102           3
 M methionine          2.1         17           1
 N asparagine          4.0         32           2
 P proline             5.9         47           2
 Q glutamine           4.6         37           2
 R arginine            5.8         46           2
 S serine              6.5         52           2
 T threonine           4.1         33           2
 V valine              7.4         59           2
 W tryptophan          2.0         16           1
 Y tyrosine            1.6         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neurotrophic tyrosine kinase, receptor, type 1 isofor... 
NTRK1                 0.989   neurotrophic tyrosine kinase, receptor, type 1 isofo...
NTRK1                 0.894   neurotrophic tyrosine kinase, receptor, type 1 isofo...
NTRK3                 0.448   neurotrophic tyrosine kinase, receptor, type 3 isofo...
NTRK3                 0.442   neurotrophic tyrosine kinase, receptor, type 3 isofo...
NTRK2                 0.431   neurotrophic tyrosine kinase, receptor, type 2 isofo...
NTRK2                 0.425   neurotrophic tyrosine kinase, receptor, type 2 isofo...
MUSK                  0.161   skeletal muscle receptor tyrosine kinase 
NTRK3                 0.157   neurotrophic tyrosine kinase, receptor, type 3 isofo...
NTRK2                 0.144   neurotrophic tyrosine kinase, receptor, type 2 isofo...
ROR1                  0.140   receptor tyrosine kinase-like orphan receptor 1 iso...
NTRK2                 0.138   neurotrophic tyrosine kinase, receptor, type 2 isofo...
IGF1R                 0.136   insulin-like growth factor 1 receptor precursor [Homo...
DDR2                  0.136   discoidin domain receptor family, member 2 precursor...
DDR2                  0.136   discoidin domain receptor family, member 2 precursor...
ROR2                  0.132   receptor tyrosine kinase-like orphan receptor 2 prec...
DDR1                  0.132   discoidin domain receptor family, member 1 isoform b...
DDR1                  0.132   discoidin domain receptor family, member 1 isoform a...
INSRR                 0.132   insulin receptor-related receptor precursor 
INSR                  0.132   insulin receptor isoform Short precursor 
INSR                  0.132   insulin receptor isoform Long precursor 
NTRK2                 0.130   neurotrophic tyrosine kinase, receptor, type 2 isofo...
DDR1                  0.128   discoidin domain receptor family, member 1 isoform c...
ALK                   0.127   anaplastic lymphoma kinase 
LTK                   0.124   leukocyte receptor tyrosine kinase isoform 1 precurs...
LTK                   0.124   leukocyte receptor tyrosine kinase isoform 2 precurs...
PTK7                  0.123   PTK7 protein tyrosine kinase 7 isoform b precursor [...
FGFR4                 0.122   fibroblast growth factor receptor 4 isoform 1 precur...
FGFR4                 0.122   fibroblast growth factor receptor 4 isoform 1 precur...
PTK7                  0.122   PTK7 protein tyrosine kinase 7 isoform a precursor [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press