Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292233 Sequence: fasta or formatted (139aa) NCBI GI: 239755501
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         16           2
 C cysteine            5.8          8           2
 D aspartate           0.7          1           1
 E glutamate           5.0          7           1
 F phenylalanine       0.7          1           1
 G glycine            14.4         20           3
 H histidine           0.7          1           1
 I isoleucine          1.4          2           1
 K lysine              2.2          3           1
 L leucine            12.2         17           2
 M methionine          2.9          4           1
 N asparagine          2.2          3           1
 P proline            10.8         15           4
 Q glutamine           4.3          6           1
 R arginine            2.9          4           1
 S serine              9.4         13           1
 T threonine           4.3          6           1
 V valine              2.9          4           1
 W tryptophan          5.0          7           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290077          1.000   PREDICTED: hypothetical protein XP_002347239 
LOC100287086          1.000   PREDICTED: hypothetical protein XP_002343099 
SH3D20                0.025   SH3 domain containing 20 
NTRK1                 0.022   neurotrophic tyrosine kinase, receptor, type 1 isofo...
NTRK1                 0.022   neurotrophic tyrosine kinase, receptor, type 1 isofor...
LOC100293408          0.022   PREDICTED: hypothetical protein 
LOC100289362          0.022   PREDICTED: hypothetical protein 
LOC100289362          0.022   PREDICTED: hypothetical protein XP_002343719 
FUSSEL18              0.018   PREDICTED: functional smad suppressing element 18 [...
CDRT15L1              0.018   PREDICTED: CMT1A duplicated region transcript 15-li...
FUSSEL18              0.018   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.018   PREDICTED: functional smad suppressing element 18 [...
CDRT15L1              0.018   PREDICTED: CMT1A duplicated region transcript 15-lik...
SSPO                  0.018   SCO-spondin 
MIDN                  0.018   midnolin 
GPR150                0.018   G protein-coupled receptor 150 
LOC100131830          0.018   PREDICTED: hypothetical protein 
LOC100293256          0.018   PREDICTED: hypothetical protein 
LOC100131830          0.018   PREDICTED: hypothetical protein 
LOC100290489          0.018   PREDICTED: hypothetical protein XP_002346789 
LOC100288758          0.018   PREDICTED: hypothetical protein XP_002342653 
UBR2                  0.018   ubiquitin protein ligase E3 component n-recognin 2 [...
TIGD5                 0.018   tigger transposable element derived 5 
CEBPB                 0.014   CCAAT/enhancer binding protein beta 
LOC100131830          0.014   PREDICTED: hypothetical protein 
SMARCC1               0.014   SWI/SNF-related matrix-associated actin-dependent r...
TGFB1I1               0.014   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.014   transforming growth factor beta 1 induced transcript...
MCTP1                 0.014   multiple C2 domains, transmembrane 1 isoform L [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press