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Search of human proteins with 239754965
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754965 PREDICTED: hypothetical protein [Homo sapiens]
(213 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754965 PREDICTED: hypothetical protein [Homo sapiens] 456 e-129
gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo ... 264 5e-71
gi|239749521 PREDICTED: hypothetical protein XP_002347072 [Homo ... 261 3e-70
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 40 0.001
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 40 0.001
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 40 0.002
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 39 0.003
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 39 0.003
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 39 0.003
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 39 0.003
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 39 0.003
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 39 0.003
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 39 0.003
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 39 0.004
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 39 0.004
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 39 0.004
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 39 0.004
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 39 0.004
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 39 0.004
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] 39 0.004
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 39 0.004
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens] 39 0.004
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens] 39 0.004
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens] 39 0.004
gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens] 39 0.004
gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens] 39 0.004
gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens] 39 0.004
gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens] 39 0.004
gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens] 39 0.004
gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens] 39 0.004
>gi|239754965 PREDICTED: hypothetical protein [Homo sapiens]
Length = 213
Score = 456 bits (1173), Expect = e-129
Identities = 213/213 (100%), Positives = 213/213 (100%)
Query: 1 MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP 60
MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP
Sbjct: 1 MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP 60
Query: 61 PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS 120
PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS
Sbjct: 61 PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS 120
Query: 121 APDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRG 180
APDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRG
Sbjct: 121 APDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRG 180
Query: 181 DPNAEGGRAKEATRDHSDRGQPESAPAAPTHPP 213
DPNAEGGRAKEATRDHSDRGQPESAPAAPTHPP
Sbjct: 181 DPNAEGGRAKEATRDHSDRGQPESAPAAPTHPP 213
>gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo
sapiens]
Length = 329
Score = 264 bits (674), Expect = 5e-71
Identities = 148/245 (60%), Positives = 155/245 (63%), Gaps = 39/245 (15%)
Query: 1 MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP 60
MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP
Sbjct: 1 MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP 60
Query: 61 PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS 120
PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS
Sbjct: 61 PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS 120
Query: 121 APDT---------------VAAT---SGVCGELRDSAKRS----PPRAAAGEGGWARP-- 156
T +AA+ SG+ E R PPRA + RP
Sbjct: 121 VSMTGSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNE 180
Query: 157 ----PPTPGAQG-----------PAKPPRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQ 201
PP G P P FP PG G P + G ++ G
Sbjct: 181 AHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGN 240
Query: 202 PESAP 206
P P
Sbjct: 241 PSPRP 245
>gi|239749521 PREDICTED: hypothetical protein XP_002347072 [Homo
sapiens]
Length = 184
Score = 261 bits (667), Expect = 3e-70
Identities = 127/144 (88%), Positives = 130/144 (90%), Gaps = 5/144 (3%)
Query: 1 MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP 60
MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP
Sbjct: 1 MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP 60
Query: 61 PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS 120
PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS
Sbjct: 61 PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS 120
Query: 121 APDTVAATSGVCGELRDSAKRSPP 144
+ +G + SAK SPP
Sbjct: 121 -----VSMTGSDPVTKQSAKDSPP 139
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 40.4 bits (93), Expect = 0.001
Identities = 35/115 (30%), Positives = 44/115 (38%), Gaps = 19/115 (16%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSA---KRSPPRAAAGEG--GWARPPPTPGAQGPAKPP 169
G+ P A G G D+ +R PP A G G A PP G +G A PP
Sbjct: 654 GKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPP 713
Query: 170 RFP--AWRPGGRGDPNAEGGRAKEATRDHSDRGQP----------ESAPAAPTHP 212
P A PG +G P GG + D+G+P + P PT P
Sbjct: 714 GPPGAAGTPGLQGMPGERGGLGSPGPK--GDKGEPGGPGADGVPGKDGPRGPTGP 766
Score = 36.2 bits (82), Expect = 0.021
Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 13/108 (12%)
Query: 113 VCGREDNSAPDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFP 172
V G++ P G G+ D + P G G A P +PG +G PP P
Sbjct: 754 VPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAP----GLPGIAGPRGSPGERGETGPPG-P 808
Query: 173 AWRPGGRGDPNAEGGRAKEATRDHSDRGQPE--------SAPAAPTHP 212
A PG G GG+ + G P S PA P P
Sbjct: 809 AGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGP 856
Score = 35.0 bits (79), Expect = 0.047
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 120 SAPDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGR 179
+ P+ + G GE R + + PR AAGE G P PG +G PG
Sbjct: 494 AGPNGIPGEKGPAGE-RGAPGPAGPRGAAGEPGRDGVPGGPGMRG----------MPGSP 542
Query: 180 GDPNAEGGRAKEATRDHSDRGQPESAPAAPTHPP 213
G P ++G ++ S R P P+ P P
Sbjct: 543 GGPGSDGKPGPPGSQGESGRPGP-PGPSGPRGQP 575
Score = 33.1 bits (74), Expect = 0.18
Identities = 25/75 (33%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPT---PGAQGPAKPPRF 171
G + P A G G+ + + R A GE G PP PG GPA PP
Sbjct: 798 GERGETGPPGPAGFPGAPGQNGEPGGKGE-RGAPGEKGEGGPPGVAGPPGGSGPAGPPG- 855
Query: 172 PAWRPGGRGDPNAEG 186
P G RG P G
Sbjct: 856 PQGVKGERGSPGGPG 870
Score = 32.0 bits (71), Expect = 0.40
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 122 PDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPA-----WRP 176
P TSG G + PP G+ G + PP PGA GP+ P RP
Sbjct: 181 PPGPPGTSGHPGSPGSPGYQGPP-GEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRP 239
Query: 177 GGRGDPNAEG 186
G RG P G
Sbjct: 240 GERGLPGPPG 249
Score = 32.0 bits (71), Expect = 0.40
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 149 GEGGWARPPPTPGAQGPAKPPRFP-AWRPGGRGDPNAEGGR 188
G G+ PP PG GP+ PP P A P G + E GR
Sbjct: 195 GSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGR 235
Score = 30.4 bits (67), Expect = 1.2
Identities = 32/125 (25%), Positives = 42/125 (33%), Gaps = 42/125 (33%)
Query: 129 SGVCGELRDSAKRSPPRAAA--------GEGGWARPPPTP-------------------- 160
+G GE + PP A G G A PP P
Sbjct: 926 AGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGA 985
Query: 161 ----GAQGPAKPPRFP-----AWRPGGRGDPNAEGGRAKEAT----RDHSDRGQPESAPA 207
G +GP P P A PG G+P ++G ++ + D + G P AP
Sbjct: 986 NGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSP-GAPG 1044
Query: 208 APTHP 212
AP HP
Sbjct: 1045 APGHP 1049
Score = 29.6 bits (65), Expect = 2.0
Identities = 28/105 (26%), Positives = 31/105 (29%), Gaps = 9/105 (8%)
Query: 113 VCGREDNSAPDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKP---- 168
V G S P GV GE R S G G PP + G GP P
Sbjct: 841 VAGPPGGSGPAGPPGPQGVKGE-RGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSP 899
Query: 169 ----PRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQPESAPAAP 209
P PA G G P G + + P AP
Sbjct: 900 GKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAP 944
Score = 29.3 bits (64), Expect = 2.6
Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPP-----RAAAGEGGWARPPPTPGAQGPAKPP 169
G + P T+G G + P A G+ G P GAQGP PP
Sbjct: 327 GSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPP 386
Query: 170 RFPAWRPGGRGDPNAEG 186
PGG+G+ G
Sbjct: 387 GING-SPGGKGEMGPAG 402
Score = 29.3 bits (64), Expect = 2.6
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 144 PRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQPE 203
PR G G T G GP P PG RG+ G R E + H + P
Sbjct: 1138 PRGPVGPSGPPGKDGTSGHPGPIGP-------PGPRGN---RGERGSEGSPGHPGQPGPP 1187
Query: 204 SAPAAP 209
P AP
Sbjct: 1188 GPPGAP 1193
Score = 29.3 bits (64), Expect = 2.6
Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 120 SAPDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGR 179
S P TSG G + PR GE G P PG GP PP P GG
Sbjct: 1145 SGPPGKDGTSGHPGPIGPPG----PRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGV 1200
Query: 180 G 180
G
Sbjct: 1201 G 1201
Score = 28.1 bits (61), Expect = 5.8
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 15/96 (15%)
Query: 122 PDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAW------- 174
P SG G+ +S + P GE G PP G +GPA P FP
Sbjct: 217 PPGAIGPSGPAGKDGESGRPGRP----GERGLPGPP---GIKGPAGIPGFPGMKGHRGFD 269
Query: 175 -RPGGRGDPNAEGGRAKEATRDHSDRGQPESAPAAP 209
R G +G+ A G + + + P AP
Sbjct: 270 GRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAP 305
Score = 28.1 bits (61), Expect = 5.8
Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 149 GEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQPESAPAA 208
GE G P GA GP P P R G G P A G R + R + P P
Sbjct: 285 GENGL---PGENGAPGPMGPRGAPGER-GRPGLPGAAGARGNDGARGSDGQPGPPGPPGT 340
Query: 209 PTHP 212
P
Sbjct: 341 AGFP 344
Score = 28.1 bits (61), Expect = 5.8
Identities = 32/104 (30%), Positives = 36/104 (34%), Gaps = 23/104 (22%)
Query: 116 REDNSAPDTVAATS-----GVCGELRDSAKR--SPPRAAAGEGGWARPPPTPGAQGPAKP 168
R +N +P A G G S R S P AG G A PG QGP
Sbjct: 1034 RGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGP--- 1090
Query: 169 PRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQPESAPAAPTHP 212
RGD G R + H RG P + P AP P
Sbjct: 1091 ----------RGDKGETGERGAAGIKGH--RGFPGN-PGAPGSP 1121
Score = 27.7 bits (60), Expect = 7.6
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 17/66 (25%)
Query: 148 AGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQPESAPA 207
AG G A PP PG G + P P PG +G P G ++ P+
Sbjct: 170 AGYPGPAGPPGPPGPPGTSGHPGSPG-SPGYQGPPGEPG----------------QAGPS 212
Query: 208 APTHPP 213
P PP
Sbjct: 213 GPPGPP 218
Score = 27.3 bits (59), Expect = 9.9
Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 145 RAAAGEGGWARPPPTPGAQGPA--------KPPRFPAWRPGGRGDPNAEGGR 188
R A G G A P PG +GPA PR A PG G P G R
Sbjct: 485 RGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMR 536
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 40.0 bits (92), Expect = 0.001
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 123 DTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDP 182
D + T GV + +++PP GG PPP P GP PP GRG P
Sbjct: 257 DFIEKTGGVEAVKNELRRQAPPPPPPSRGGPPPPPPPPHNSGPPPPP------ARGRGAP 310
Query: 183 NAEGGRAKEATRDHSDRGQPESAPAAPTHPP 213
RA A + P S P+ PP
Sbjct: 311 PPPPSRAPTA----APPPPPPSRPSVAVPPP 337
Score = 30.0 bits (66), Expect = 1.5
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 142 SPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDP 182
+PP A PPP P P PP P+ P G P
Sbjct: 321 APPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPP 361
Score = 29.3 bits (64), Expect = 2.6
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 143 PPRAAAGEGGWAR--PPPTPGAQGPAKPPRFPAWRPGGRGDPNAEGGRA 189
PP + G G A PPP P GP PP P+ G P G +A
Sbjct: 361 PPPSVLGVGPVAPPPPPPPPPPPGPPPPPGLPS--DGDHQVPTTAGNKA 407
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 39.7 bits (91), Expect = 0.002
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 149 GEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEG--GRAKEATRDHSDRGQPESAP 206
GE G P PG +GP PP P + PG +GDP + G G A AT+ + P P
Sbjct: 437 GEAGPRGAPGIPGTRGPIGPPGIPGF-PGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPP 495
Query: 207 AAPTH 211
H
Sbjct: 496 GPRGH 500
Score = 28.9 bits (63), Expect = 3.4
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 143 PPRAAAGEGGWARPPPTPGAQGPAKPPR--FPAWRPGGRGDPNAEG 186
P +A G+ G P PG +GP P PA PG RG P G
Sbjct: 100 PGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPG 145
Score = 28.9 bits (63), Expect = 3.4
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 149 GEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEGGRA-KEATRDHSDRG-QPESAP 206
GE G A P PGA+G P P +PG G P G + K H G + E+ P
Sbjct: 308 GERGPAGLPGGPGAKGEQGPAGLPG-KPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGP 366
Query: 207 AAPTHPP 213
A P P
Sbjct: 367 AGPAGYP 373
Score = 27.7 bits (60), Expect = 7.6
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 145 RAAAGEGGWARPPPTPGAQGPAKPPRFPA-------WRPGGRGDPNAEGGR 188
R G G P PG +GP PP P +PG +G A G R
Sbjct: 120 RGPYGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPR 170
Score = 27.7 bits (60), Expect = 7.6
Identities = 20/80 (25%), Positives = 25/80 (31%), Gaps = 14/80 (17%)
Query: 144 PRAAAGEGGWARPPPTPGAQGP--------------AKPPRFPAWRPGGRGDPNAEGGRA 189
P G+ G PP G QGP P PA PG +G+ + G
Sbjct: 327 PAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSDG 386
Query: 190 KEATRDHSDRGQPESAPAAP 209
K P+ P P
Sbjct: 387 KPGYPGKPGLDGPKGNPGLP 406
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 39.3 bits (90), Expect = 0.003
Identities = 31/111 (27%), Positives = 39/111 (35%), Gaps = 13/111 (11%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSP-----PRAAAGEGGWARPPPTPGAQGPAKPP 169
G P G CGE ++S P G G + P PG GP PP
Sbjct: 175 GPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPP 234
Query: 170 RFPAWRPGGRGDPNAEGGRAKEATR-------DHSDRGQPESAPAAPTHPP 213
P PG +GDP +G ++ R H +G P A A P
Sbjct: 235 GLPG-PPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP 284
Score = 32.7 bits (73), Expect = 0.24
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 130 GVCGELRDSAKRSPP--RAAAGEGG--WARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAE 185
G GE ++ + P + AGE G A P PG +GP PP PG +G+ +
Sbjct: 474 GEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQG-VPGPKGEAGLD 532
Query: 186 GGRAKEATR-DHSDRGQPESAPAA 208
G + ++ + + DRG P P A
Sbjct: 533 GAKGEKGFQGEKGDRG-PLGLPGA 555
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 39.3 bits (90), Expect = 0.003
Identities = 31/111 (27%), Positives = 39/111 (35%), Gaps = 13/111 (11%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSP-----PRAAAGEGGWARPPPTPGAQGPAKPP 169
G P G CGE ++S P G G + P PG GP PP
Sbjct: 184 GPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPP 243
Query: 170 RFPAWRPGGRGDPNAEGGRAKEATR-------DHSDRGQPESAPAAPTHPP 213
P PG +GDP +G ++ R H +G P A A P
Sbjct: 244 GLPG-PPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP 293
Score = 32.7 bits (73), Expect = 0.24
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 130 GVCGELRDSAKRSPP--RAAAGEGG--WARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAE 185
G GE ++ + P + AGE G A P PG +GP PP PG +G+ +
Sbjct: 483 GEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQG-VPGPKGEAGLD 541
Query: 186 GGRAKEATR-DHSDRGQPESAPAA 208
G + ++ + + DRG P P A
Sbjct: 542 GAKGEKGFQGEKGDRG-PLGLPGA 564
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 39.3 bits (90), Expect = 0.003
Identities = 31/111 (27%), Positives = 39/111 (35%), Gaps = 13/111 (11%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSP-----PRAAAGEGGWARPPPTPGAQGPAKPP 169
G P G CGE ++S P G G + P PG GP PP
Sbjct: 196 GPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPP 255
Query: 170 RFPAWRPGGRGDPNAEGGRAKEATR-------DHSDRGQPESAPAAPTHPP 213
P PG +GDP +G ++ R H +G P A A P
Sbjct: 256 GLPG-PPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP 305
Score = 32.7 bits (73), Expect = 0.24
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 130 GVCGELRDSAKRSPP--RAAAGEGG--WARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAE 185
G GE ++ + P + AGE G A P PG +GP PP PG +G+ +
Sbjct: 495 GEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQG-VPGPKGEAGLD 553
Query: 186 GGRAKEATR-DHSDRGQPESAPAA 208
G + ++ + + DRG P P A
Sbjct: 554 GAKGEKGFQGEKGDRG-PLGLPGA 576
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 38.9 bits (89), Expect = 0.003
Identities = 34/107 (31%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 109 ESCCVCGREDNSAPDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKP 168
E C VC D S T T+GV G D+ R P R AG G P PG GP P
Sbjct: 90 ECCPVC--PDGSESPTDQETTGVEGPKGDTGPRGP-RGPAGPPGRDGIPGQPGLPGPPGP 146
Query: 169 PRFPAWRPGGRGDPNAEGGRAKEATRDHSDR---GQPESAPAAPTHP 212
PG G P G A + + + ++ G P P+ P
Sbjct: 147 -------PGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGP 186
Score = 37.4 bits (85), Expect = 0.010
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 118 DNSAPDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPG 177
+N AP + G+ GE P A +G P PG GPA PP FP G
Sbjct: 294 ENGAPGQMGPR-GLPGERGRPGAPGPAGARGNDGATGAAGP-PGPTGPAGPPGFPG-AVG 350
Query: 178 GRGDPNAEGGRAKEATRD-HSDRGQPESAPAA 208
+G+ +G R E + + G P A AA
Sbjct: 351 AKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAA 382
Score = 36.6 bits (83), Expect = 0.016
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 144 PRAAAGEGGWARPPPTPGAQGP-AKPPRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQP 202
P A+GE G P PG GP + R A PG G P +G + R + P
Sbjct: 987 PSGASGERGPPGPMGPPGLAGPPGESGREGA--PGAEGSPGRDGSPGAKGDRGETGPAGP 1044
Query: 203 ESAPAAPTHP 212
AP AP P
Sbjct: 1045 PGAPGAPGAP 1054
Score = 36.2 bits (82), Expect = 0.021
Identities = 31/102 (30%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFP-- 172
GR + +G G K PP AG+ G PP PGA+G A FP
Sbjct: 527 GRPGEAGLPGAKGLTGSPGSPGPDGKTGPP-GPAGQDGRPGPPGPPGARGQAGVMGFPGP 585
Query: 173 ---AWRPGGRGDPNAEG--GRAKEATRDHSDRGQPESAPAAP 209
A PG G+ G G A +D Q PA P
Sbjct: 586 KGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGP 627
Score = 34.7 bits (78), Expect = 0.062
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 145 RAAAGEGGWARPPPTPGAQGPAKP--PRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQP 202
+ A G G A P PGA+GP+ P P P G G+P A G + D +G+P
Sbjct: 397 KGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKG-----DTGAKGEP 451
Query: 203 ESAPAAPTHPP 213
P PP
Sbjct: 452 --GPVGVQGPP 460
Score = 34.7 bits (78), Expect = 0.062
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 130 GVCGELRDSAKRSPPRAA--AGEGGWARPPPTPGAQG---PAKPPRFPAWRPGGRGDPNA 184
G G+ ++ + PP A AGE G P +PG QG PA PP A +PG +G P
Sbjct: 608 GPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPG-EAGKPGEQGVPGD 666
Query: 185 EGGRAKEATRDHSDRGQP----ESAPAAPTHP 212
G R +RG P P P P
Sbjct: 667 LGAPGPSGAR--GERGFPGERGVQGPPGPAGP 696
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/103 (29%), Positives = 38/103 (36%), Gaps = 5/103 (4%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGP--AKPPRFP 172
G + P G GE D + R +G G PP +PG QGP A P P
Sbjct: 1082 GARGPAGPQGPRGDKGETGEQGDRGIKGH-RGFSGLQGPPGPPGSPGEQGPSGASGPAGP 1140
Query: 173 AWRPGGRGDPNAEG-GRAKEATRDHSDRGQP-ESAPAAPTHPP 213
PG G P +G RG+ ++ P P PP
Sbjct: 1141 RGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPP 1183
Score = 33.5 bits (75), Expect = 0.14
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKP--PRFP 172
G + P G G + + K S R G G A P GA+GPA P PR
Sbjct: 1037 GETGPAGPPGAPGAPGAPGPVGPAGK-SGDRGETGPAGPAGPVGPVGARGPAGPQGPR-- 1093
Query: 173 AWRPGGRGDPNAEGGRAKEATRDHSDRGQPESAPAAP 209
G +G+ +G R + R S P P +P
Sbjct: 1094 ----GDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSP 1126
Score = 32.3 bits (72), Expect = 0.31
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPPRAAA--------GEGGWARPPPTPGAQGPA 166
G + S P A +G G D + PP A G+ G P GA+G A
Sbjct: 779 GDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDA 838
Query: 167 KP--PRFPAWRPGGRGDPNAEGGR 188
P P PA PG G+ A G +
Sbjct: 839 GPPGPAGPAGPPGPIGNVGAPGAK 862
Score = 32.0 bits (71), Expect = 0.40
Identities = 28/98 (28%), Positives = 35/98 (35%), Gaps = 28/98 (28%)
Query: 144 PRAAAGEGGWARPPPTPGAQGPAKP--PRFPAW---------------RPGGRGDPNAEG 186
P A G G+ PP PG G + P PR P RPG RG P +G
Sbjct: 192 PPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQG 251
Query: 187 GRAKEAT------RDHS-----DRGQPESAPAAPTHPP 213
R T + H D + ++ PA P P
Sbjct: 252 ARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEP 289
Score = 32.0 bits (71), Expect = 0.40
Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 122 PDTVAATSGVCGELRDSAKRSP--PRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGR 179
P A G G + + P PR + G G P PG G A PA PG
Sbjct: 336 PTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAG----PAGNPGAD 391
Query: 180 GDPNAEG--GRAKEATRDHSDRGQPESAPAAPTHPP 213
G P A+G G A + S P P PP
Sbjct: 392 GQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPP 427
Score = 32.0 bits (71), Expect = 0.40
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 123 DTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQG----PAKP-------PRF 171
D VA G GE R S + P+ + GE G PGA+G P P P
Sbjct: 499 DGVAGPKGPAGE-RGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPG 557
Query: 172 PAWRPGGRGDPNAEGGRAK 190
PA + G G P G R +
Sbjct: 558 PAGQDGRPGPPGPPGARGQ 576
Score = 31.2 bits (69), Expect = 0.68
Identities = 27/73 (36%), Positives = 30/73 (41%), Gaps = 15/73 (20%)
Query: 143 PPRAAA--GEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEGGRAKEATRDHSDRG 200
PP A G G PP G GP PP PA + GG+G P E G A G
Sbjct: 870 PPGATGFPGAAGRVGPPGPSGNAGPPGPPG-PAGKEGGKG-PRGETGPA----------G 917
Query: 201 QP-ESAPAAPTHP 212
+P E P P P
Sbjct: 918 RPGEVGPPGPPGP 930
Score = 31.2 bits (69), Expect = 0.68
Identities = 31/112 (27%), Positives = 39/112 (34%), Gaps = 23/112 (20%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAW 174
G+E P +G GE+ P AGE G +PGA GPA P P
Sbjct: 902 GKEGGKGPRGETGPAGRPGEVGPPGPPGP----AGEKG------SPGADGPAGAPGTPGP 951
Query: 175 R-----------PGGRGDPNAEG--GRAKEATRDHSDRGQPESAPAAPTHPP 213
+ PG RG+ G G + E + E P P PP
Sbjct: 952 QGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPP 1003
Score = 29.6 bits (65), Expect = 2.0
Identities = 22/71 (30%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 144 PRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEGGRAKEATR-DHSDRGQP 202
P +G G PP PG QG PP P PG G G D + G+P
Sbjct: 180 PMGPSGPRGLPGPPGAPGPQGFQGPPGEPG-EPGASGPMGPRGPPGPPGKNGDDGEAGKP 238
Query: 203 ----ESAPAAP 209
E P P
Sbjct: 239 GRPGERGPPGP 249
Score = 29.6 bits (65), Expect = 2.0
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 144 PRAAAGEGGWARPPPTPGAQGPAKPP 169
PR G+ G PP PG GP PP
Sbjct: 1167 PRGRTGDAGPVGPPGPPGPPGPPGPP 1192
Score = 28.5 bits (62), Expect = 4.4
Identities = 22/71 (30%), Positives = 24/71 (33%), Gaps = 15/71 (21%)
Query: 145 RAAAGEGGWARPPPTPGAQGPAKP--------------PRFPAWRPGGRGDPNAEGGRA- 189
R G G P PGA GP P P P G RG +G R
Sbjct: 1036 RGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGD 1095
Query: 190 KEATRDHSDRG 200
K T + DRG
Sbjct: 1096 KGETGEQGDRG 1106
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 38.9 bits (89), Expect = 0.003
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 137 DSAKRSPPRAAAGEGGWARPPPT--PGAQGPAKPPRFPAWRPGGRGDPNAEGGRAKEATR 194
+ + P AA G +P P PG GPA P FP PG +G+ G R E +
Sbjct: 331 ERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPG-APGAKGEAGPTGARGPEGAQ 389
Query: 195 DHSDRGQPESAPAAP 209
RG+P P +P
Sbjct: 390 --GPRGEP-GTPGSP 401
Score = 37.7 bits (86), Expect = 0.007
Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPPR--AAAGEGGWARPPPTPGAQGP---AKPP 169
G E P +A G+ G +R P +GE G P G +GP PP
Sbjct: 966 GAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPP 1025
Query: 170 RF--PAWRPGGRGDPNAEGGRAKE-ATRDHSDRGQPES--APAAPTHP 212
PA PG G P A+G ++ A DRG+ + AP AP P
Sbjct: 1026 GLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPP 1073
Score = 36.6 bits (83), Expect = 0.016
Identities = 33/106 (31%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQG------PAKP 168
G + + V SG GE S PR GE G P GA+G PA P
Sbjct: 297 GAKGEAGAPGVKGESGSPGE-NGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP 355
Query: 169 PR--FPAWRPGGRGDPNAEGGRAKEATRDHSDRGQPESAPAAPTHP 212
P PA PG G P A+G R P P P P
Sbjct: 356 PGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP 401
Score = 33.5 bits (75), Expect = 0.14
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 130 GVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEGGRA 189
G+ G + K+ P A+G+ G P PG GPA P PG G P +G
Sbjct: 996 GLPGPSGEPGKQGAP-GASGDRGPPGPVGPPGLTGPAGEPGREG-SPGADGPPGRDGAAG 1053
Query: 190 KEATRDHSDRGQPESAPAAPTHP 212
+ R + AP P P
Sbjct: 1054 VKGDRGETGAVGAPGAPGPPGSP 1076
Score = 33.1 bits (74), Expect = 0.18
Identities = 28/103 (27%), Positives = 35/103 (33%), Gaps = 7/103 (6%)
Query: 113 VCGREDNSAPDTVAATSGVCGELRDSAKRSPP--RAAAGEGGWARPPPTPGAQGPAKPPR 170
+ G + P A G G+ D ++ P R GE G P PG GP PP
Sbjct: 115 IVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPG 174
Query: 171 FPAWRPGGRGDPNAEGGRAKEATRDHSDRGQPESAPAAPTHPP 213
GG GG ++A Q P P PP
Sbjct: 175 L-----GGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPP 212
Score = 33.1 bits (74), Expect = 0.18
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 130 GVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEGGRA 189
G G + + PP AG G P G GP P F A PG G P A+G +
Sbjct: 795 GPAGANGEKGEVGPP-GPAGSAGARGAPGERGETGPPGPAGF-AGPPGADGQPGAKGEQG 852
Query: 190 KEATRDHSDRGQPESAPAAP 209
+ + + P+ AP
Sbjct: 853 EAGQKGDAGAPGPQGPSGAP 872
Score = 32.3 bits (72), Expect = 0.31
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 144 PRAAAGEGGWARPPPTPGAQGPAKPP 169
PR +GE G A PP PG GP PP
Sbjct: 1189 PRGRSGETGPAGPPGNPGPPGPPGPP 1214
Score = 31.6 bits (70), Expect = 0.52
Identities = 25/90 (27%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 130 GVCGELRDSAKRSPP--RAAAGEGGWARPPPTPGAQGPA-----KPPRFPAWRPGGRGDP 182
G G + +R P R G+ G A P PG +GP+ K RPG G P
Sbjct: 498 GGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLP 557
Query: 183 NAEGGRAKEATRDHSDRGQPESAPAAPTHP 212
A G + + P AP P
Sbjct: 558 GARGLTGRPGDAGPQGKVGPSGAPGEDGRP 587
Score = 31.6 bits (70), Expect = 0.52
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 144 PRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEG 186
P+ A G+ G PG QGPA PP PG G AEG
Sbjct: 928 PKGARGDSGPPGRAGEPGLQGPAGPPG-EKGEPGDDGPSGAEG 969
Score = 31.2 bits (69), Expect = 0.68
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 19/99 (19%)
Query: 129 SGVCGELRDSAKRSPPRAAA--GEGGWARPPPTPGAQGPAKPP-----------RFPAWR 175
+GV G + PP A G G PP + G GP PP R +
Sbjct: 878 TGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGP 937
Query: 176 PGGRGDPNAEGGRAKEATRDHSDRGQP-ESAPAAPTHPP 213
PG G+P +G ++G+P + P+ PP
Sbjct: 938 PGRAGEPGLQGPAGPP-----GEKGEPGDDGPSGAEGPP 971
Score = 30.8 bits (68), Expect = 0.89
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 145 RAAAGEGGWARPPPTPGAQGPAKP--PRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQP 202
+ +AG G A P PG +GP P P G G+P G + ++ + P
Sbjct: 419 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 478
Query: 203 ESAP 206
+ AP
Sbjct: 479 QGAP 482
Score = 29.6 bits (65), Expect = 2.0
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAW 174
GRE + D G G D R G G P PG+ GPA P
Sbjct: 1035 GREGSPGADGPPGRDGAAGVKGD-------RGETGAVGAPGAPGPPGSPGPAG----PTG 1083
Query: 175 RPGGRGDPNAEG 186
+ G RG+ A+G
Sbjct: 1084 KQGDRGEAGAQG 1095
Score = 28.9 bits (63), Expect = 3.4
Identities = 28/103 (27%), Positives = 35/103 (33%), Gaps = 6/103 (5%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPPRAA--AGEGGWARPPPTPGAQGPAKPPRFP 172
G + + +A G G + P A AGE G PG GP PP
Sbjct: 450 GPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPG-E 508
Query: 173 AWRPGGRGDPNAE---GGRAKEATRDHSDRGQPESAPAAPTHP 212
PG RG P + G + R S P+ A P P
Sbjct: 509 RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP 551
Score = 28.9 bits (63), Expect = 3.4
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 130 GVCGELRDSAKRSPPRAA--AGEGGWARPPPTPGAQGPAKPPRFP--AWRPGGRGDPNAE 185
G+ G+ ++ PP A AGE G P G QG PP P +PG +G P
Sbjct: 630 GLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEA 689
Query: 186 GGRAKEATRDHSDRGQP 202
G R +RG P
Sbjct: 690 GAPGLVGPR--GERGFP 704
Score = 28.1 bits (61), Expect = 5.8
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 130 GVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEG 186
G GE + R P A G P TPG+ GPA + PG G P A+G
Sbjct: 372 GAKGEAGPTGARGPEGAQGPRG----EPGTPGSPGPAG----ASGNPGTDGIPGAKG 420
Score = 28.1 bits (61), Expect = 5.8
Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 144 PRAAAGEGGWARPPPTPGAQGPAK--PPRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQ 201
P GEGG PG G PR PG RG P A+G +
Sbjct: 670 PPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDG 729
Query: 202 PESAPAAPTHPP 213
P+ A + P PP
Sbjct: 730 PKGA-SGPAGPP 740
Score = 27.7 bits (60), Expect = 7.6
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 144 PRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEG 186
P A GE G PP GA+G FP + G G+P G
Sbjct: 577 PSGAPGEDGRPGPPGPQGARGQPGVMGFPGPK-GANGEPGKAG 618
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 38.9 bits (89), Expect = 0.003
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 137 DSAKRSPPRAAAGEGGWARPPPT--PGAQGPAKPPRFPAWRPGGRGDPNAEGGRAKEATR 194
+ + P AA G +P P PG GPA P FP PG +G+ G R E +
Sbjct: 262 ERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPG-APGAKGEAGPTGARGPEGAQ 320
Query: 195 DHSDRGQPESAPAAP 209
RG+P P +P
Sbjct: 321 --GPRGEP-GTPGSP 332
Score = 37.7 bits (86), Expect = 0.007
Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPPR--AAAGEGGWARPPPTPGAQGP---AKPP 169
G E P +A G+ G +R P +GE G P G +GP PP
Sbjct: 897 GAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPP 956
Query: 170 RF--PAWRPGGRGDPNAEGGRAKE-ATRDHSDRGQPES--APAAPTHP 212
PA PG G P A+G ++ A DRG+ + AP AP P
Sbjct: 957 GLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPP 1004
Score = 36.6 bits (83), Expect = 0.016
Identities = 33/106 (31%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQG------PAKP 168
G + + V SG GE S PR GE G P GA+G PA P
Sbjct: 228 GAKGEAGAPGVKGESGSPGE-NGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP 286
Query: 169 PR--FPAWRPGGRGDPNAEGGRAKEATRDHSDRGQPESAPAAPTHP 212
P PA PG G P A+G R P P P P
Sbjct: 287 PGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP 332
Score = 33.5 bits (75), Expect = 0.14
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 130 GVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEGGRA 189
G+ G + K+ P A+G+ G P PG GPA P PG G P +G
Sbjct: 927 GLPGPSGEPGKQGAP-GASGDRGPPGPVGPPGLTGPAGEPGREG-SPGADGPPGRDGAAG 984
Query: 190 KEATRDHSDRGQPESAPAAPTHP 212
+ R + AP P P
Sbjct: 985 VKGDRGETGAVGAPGAPGPPGSP 1007
Score = 33.1 bits (74), Expect = 0.18
Identities = 28/103 (27%), Positives = 35/103 (33%), Gaps = 7/103 (6%)
Query: 113 VCGREDNSAPDTVAATSGVCGELRDSAKRSPP--RAAAGEGGWARPPPTPGAQGPAKPPR 170
+ G + P A G G+ D ++ P R GE G P PG GP PP
Sbjct: 46 IVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPG 105
Query: 171 FPAWRPGGRGDPNAEGGRAKEATRDHSDRGQPESAPAAPTHPP 213
GG GG ++A Q P P PP
Sbjct: 106 L-----GGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPP 143
Score = 33.1 bits (74), Expect = 0.18
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 130 GVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEGGRA 189
G G + + PP AG G P G GP P F A PG G P A+G +
Sbjct: 726 GPAGANGEKGEVGPP-GPAGSAGARGAPGERGETGPPGPAGF-AGPPGADGQPGAKGEQG 783
Query: 190 KEATRDHSDRGQPESAPAAP 209
+ + + P+ AP
Sbjct: 784 EAGQKGDAGAPGPQGPSGAP 803
Score = 32.3 bits (72), Expect = 0.31
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 144 PRAAAGEGGWARPPPTPGAQGPAKPP 169
PR +GE G A PP PG GP PP
Sbjct: 1120 PRGRSGETGPAGPPGNPGPPGPPGPP 1145
Score = 31.6 bits (70), Expect = 0.52
Identities = 25/90 (27%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 130 GVCGELRDSAKRSPP--RAAAGEGGWARPPPTPGAQGPA-----KPPRFPAWRPGGRGDP 182
G G + +R P R G+ G A P PG +GP+ K RPG G P
Sbjct: 429 GGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLP 488
Query: 183 NAEGGRAKEATRDHSDRGQPESAPAAPTHP 212
A G + + P AP P
Sbjct: 489 GARGLTGRPGDAGPQGKVGPSGAPGEDGRP 518
Score = 31.6 bits (70), Expect = 0.52
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 144 PRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEG 186
P+ A G+ G PG QGPA PP PG G AEG
Sbjct: 859 PKGARGDSGPPGRAGEPGLQGPAGPPG-EKGEPGDDGPSGAEG 900
Score = 31.2 bits (69), Expect = 0.68
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 19/99 (19%)
Query: 129 SGVCGELRDSAKRSPPRAAA--GEGGWARPPPTPGAQGPAKPP-----------RFPAWR 175
+GV G + PP A G G PP + G GP PP R +
Sbjct: 809 TGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGP 868
Query: 176 PGGRGDPNAEGGRAKEATRDHSDRGQP-ESAPAAPTHPP 213
PG G+P +G ++G+P + P+ PP
Sbjct: 869 PGRAGEPGLQGPAGPP-----GEKGEPGDDGPSGAEGPP 902
Score = 30.8 bits (68), Expect = 0.89
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 145 RAAAGEGGWARPPPTPGAQGPAKP--PRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQP 202
+ +AG G A P PG +GP P P G G+P G + ++ + P
Sbjct: 350 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 409
Query: 203 ESAP 206
+ AP
Sbjct: 410 QGAP 413
Score = 29.6 bits (65), Expect = 2.0
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAW 174
GRE + D G G D R G G P PG+ GPA P
Sbjct: 966 GREGSPGADGPPGRDGAAGVKGD-------RGETGAVGAPGAPGPPGSPGPAG----PTG 1014
Query: 175 RPGGRGDPNAEG 186
+ G RG+ A+G
Sbjct: 1015 KQGDRGEAGAQG 1026
Score = 28.9 bits (63), Expect = 3.4
Identities = 28/103 (27%), Positives = 35/103 (33%), Gaps = 6/103 (5%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPPRAA--AGEGGWARPPPTPGAQGPAKPPRFP 172
G + + +A G G + P A AGE G PG GP PP
Sbjct: 381 GPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPG-E 439
Query: 173 AWRPGGRGDPNAE---GGRAKEATRDHSDRGQPESAPAAPTHP 212
PG RG P + G + R S P+ A P P
Sbjct: 440 RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP 482
Score = 28.9 bits (63), Expect = 3.4
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 130 GVCGELRDSAKRSPPRAA--AGEGGWARPPPTPGAQGPAKPPRFP--AWRPGGRGDPNAE 185
G+ G+ ++ PP A AGE G P G QG PP P +PG +G P
Sbjct: 561 GLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEA 620
Query: 186 GGRAKEATRDHSDRGQP 202
G R +RG P
Sbjct: 621 GAPGLVGPR--GERGFP 635
Score = 28.1 bits (61), Expect = 5.8
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 130 GVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEG 186
G GE + R P A G P TPG+ GPA + PG G P A+G
Sbjct: 303 GAKGEAGPTGARGPEGAQGPRG----EPGTPGSPGPAG----ASGNPGTDGIPGAKG 351
Score = 28.1 bits (61), Expect = 5.8
Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 144 PRAAAGEGGWARPPPTPGAQGPAK--PPRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQ 201
P GEGG PG G PR PG RG P A+G +
Sbjct: 601 PPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDG 660
Query: 202 PESAPAAPTHPP 213
P+ A + P PP
Sbjct: 661 PKGA-SGPAGPP 671
Score = 27.7 bits (60), Expect = 7.6
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 144 PRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEG 186
P A GE G PP GA+G FP + G G+P G
Sbjct: 508 PSGAPGEDGRPGPPGPQGARGQPGVMGFPGPK-GANGEPGKAG 549
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 130 GVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEGGRA 189
G GE + +R PP AG G PGA+GP PP P R G +G+P G A
Sbjct: 1486 GPLGEAGEKGERGPP-GPAGSRGLPGVAGRPGAKGPEGPPG-PTGRQGEKGEPGRPGDPA 1543
Query: 190 KEATRDHSDRGQP-ESAPAAP 209
+G+ + PA P
Sbjct: 1544 VVGPAVAGPKGEKGDVGPAGP 1564
Score = 35.4 bits (80), Expect = 0.036
Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 16/86 (18%)
Query: 130 GVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKP-------------PRFPAWRP 176
G+ G D +R P R GE G P G +GP P PR P P
Sbjct: 1329 GLPGPRGDPGERGP-RGPKGEPG--APGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDP 1385
Query: 177 GGRGDPNAEGGRAKEATRDHSDRGQP 202
G RG P G K D +RG P
Sbjct: 1386 GPRGPPGLPGTAMKGDKGDRGERGPP 1411
Score = 34.7 bits (78), Expect = 0.062
Identities = 28/86 (32%), Positives = 33/86 (38%), Gaps = 16/86 (18%)
Query: 133 GELRDSAKRSPPRA-----AAGEGGWARPPPTPGAQGPAKPPRFPAWR----------PG 177
G+ D +R PP A GE G P +PG QGP PP + PG
Sbjct: 1400 GDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPG 1459
Query: 178 GRGDPNAEGGRAKE-ATRDHSDRGQP 202
G P +G R A DRG P
Sbjct: 1460 QPGSPGEQGPRGPPGAIGPKGDRGFP 1485
Score = 33.5 bits (75), Expect = 0.14
Identities = 46/177 (25%), Positives = 55/177 (31%), Gaps = 26/177 (14%)
Query: 27 GTQGLPENHQLPGEAGQD--PSLKPSQGGTALLADPPVSDFR-------------PPQLL 71
G +G P L GE G+ P L GG P R PP L
Sbjct: 2022 GERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLP 2081
Query: 72 TCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNSAPDTVAATSGV 131
G P P S+ P L P + + G + P G+
Sbjct: 2082 GTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEP-----GSNGDQGPKGDRGVPGI 2136
Query: 132 CGELRDSAKRSPPR--AAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEG 186
G+ + R GE G A P PG QGP PP GG GDP G
Sbjct: 2137 KGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPP----GPVGGHGDPGPPG 2189
Score = 32.7 bits (73), Expect = 0.24
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 141 RSPPRAAAGEGGWARPPPTPGAQGPAKPP--RFPAWRPGG---RGDPNAEGGRAKEA-TR 194
R P+ G G P PG GP PP FP PGG +GD G + ++
Sbjct: 1870 RDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPG-VPGGTGPKGDRGETGSKGEQGLPG 1928
Query: 195 DHSDRGQPESAP 206
+ RG+P S P
Sbjct: 1929 ERGLRGEPGSVP 1940
Score = 32.0 bits (71), Expect = 0.40
Identities = 30/107 (28%), Positives = 35/107 (32%), Gaps = 13/107 (12%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPP--------RAAAGEGGWARPPPTPGAQGPA 166
G+E P G GE R PP R AGE G PP G G
Sbjct: 1725 GQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLD 1784
Query: 167 KPPRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQPESAPAAPTHPP 213
P G PN G+A + RD + E P+ PP
Sbjct: 1785 GKPG-----AAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPP 1826
Score = 30.4 bits (67), Expect = 1.2
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 148 AGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEG 186
+GE G A PP G GP PP PG G P A G
Sbjct: 2421 SGERGLAGPPGREGIPGPLGPP----GPPGSVGPPGASG 2455
Score = 29.3 bits (64), Expect = 2.6
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKP--PRFP 172
G++ N +G G+ R PP G G PP PG GPA P P
Sbjct: 2147 GQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGD-PGPPGAPGLAGPAGPQGPSGL 2205
Query: 173 AWRPGGRGDP 182
PG G P
Sbjct: 2206 KGEPGETGPP 2215
Score = 29.3 bits (64), Expect = 2.6
Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 14/106 (13%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKP-----P 169
G+E P G G D ++ R G GG+ P G+ GP P P
Sbjct: 2674 GKEGLIGPKGDRGFDGQPGPKGDQGEKGE-RGTPGIGGFPGPSGNDGSAGPPGPPGSVGP 2732
Query: 170 RFPAWRPGGRGDPNAEGGR------AKEATRDHSDRGQPESAPAAP 209
R P G +G+ G R A + ++G+P PA P
Sbjct: 2733 RGPEGLQGQKGERGPPGERVVGAPGVPGAPGERGEQGRP--GPAGP 2776
Score = 28.9 bits (63), Expect = 3.4
Identities = 33/113 (29%), Positives = 38/113 (33%), Gaps = 17/113 (15%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSAKRSP----PRAAAGEGGWARPPPTPGAQGPAKPPR 170
G E P G G D A P P+ G+ G A P G QG PP
Sbjct: 1519 GPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPG 1578
Query: 171 FP-AWRPGGRGDPNAEG-----GRA-----KEATRDHSDRGQPESAPAAPTHP 212
PG +GDP G GRA + D G+P P P P
Sbjct: 1579 LVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRP--GPPGPVGP 1629
Score = 28.9 bits (63), Expect = 3.4
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 18/91 (19%)
Query: 130 GVCGELRDSAKRSPPR---AAAGEGGWARP--PPTPGAQGPAKPPRFPA----------W 174
G+ G++ ++ K P A+ +G P P +PG GP P P
Sbjct: 2245 GLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVG 2304
Query: 175 RPGGRGDPNAEGGRAKEATRD---HSDRGQP 202
PG +G+ A GG A + + DRG P
Sbjct: 2305 LPGAKGEKGAPGGLAGDLVGEPGAKGDRGLP 2335
Score = 27.7 bits (60), Expect = 7.6
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 128 TSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEG 186
+SG G+ + PP G AR PG +G + PR P PG G P G
Sbjct: 1689 SSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRG-QEGPRGPKGDPGLPGAPGERG 1746
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 38.5 bits (88), Expect = 0.004
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 18/104 (17%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSA---------KRSPP-----RAAAGEGGWARPPPTP 160
G N PD +G GE D +R PP + + G G + P +P
Sbjct: 346 GDPGNRGPDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSP 405
Query: 161 GAQGP--AKPPRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQP 202
G +G PR P PG RGDP +G + + ++G P
Sbjct: 406 GVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPK--GEKGDP 447
Score = 33.5 bits (75), Expect = 0.14
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 130 GVCGELRDSAKRSPPRAAAGEGGWARPPPT--PGAQGPAKPPRFPAWRPGGRGDP---NA 184
G GE R P A G +P P PG G + P P PG +G+P
Sbjct: 478 GALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPG--PRGAPGEKGEPGPRGP 535
Query: 185 EGGRAKEATRDHSDRGQPESAPAAPTHP 212
EGGR + R + PA P P
Sbjct: 536 EGGRGDFGLKGEPGRKGEKGEPADPGPP 563
Score = 28.1 bits (61), Expect = 5.8
Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 144 PRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQPE 203
PR A GE G P G +G P R G +G+P G + R PE
Sbjct: 520 PRGAPGEKGEPGPRGPEGGRGDFGLKGEPG-RKGEKGEPADPGPPGEPGPRGPRGVPGPE 578
Query: 204 SAPAAPTHP 212
P P P
Sbjct: 579 GEPGPPGDP 587
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 38.5 bits (88), Expect = 0.004
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 18/104 (17%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSA---------KRSPP-----RAAAGEGGWARPPPTP 160
G N PD +G GE D +R PP + + G G + P +P
Sbjct: 346 GDPGNRGPDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSP 405
Query: 161 GAQGP--AKPPRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQP 202
G +G PR P PG RGDP +G + + ++G P
Sbjct: 406 GVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPK--GEKGDP 447
Score = 33.5 bits (75), Expect = 0.14
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 130 GVCGELRDSAKRSPPRAAAGEGGWARPPPT--PGAQGPAKPPRFPAWRPGGRGDP---NA 184
G GE R P A G +P P PG G + P P PG +G+P
Sbjct: 478 GALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPG--PRGAPGEKGEPGPRGP 535
Query: 185 EGGRAKEATRDHSDRGQPESAPAAPTHP 212
EGGR + R + PA P P
Sbjct: 536 EGGRGDFGLKGEPGRKGEKGEPADPGPP 563
Score = 28.1 bits (61), Expect = 5.8
Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 144 PRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQPE 203
PR A GE G P G +G P R G +G+P G + R PE
Sbjct: 520 PRGAPGEKGEPGPRGPEGGRGDFGLKGEPG-RKGEKGEPADPGPPGEPGPRGPRGVPGPE 578
Query: 204 SAPAAPTHP 212
P P P
Sbjct: 579 GEPGPPGDP 587
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 38.5 bits (88), Expect = 0.004
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 18/104 (17%)
Query: 115 GREDNSAPDTVAATSGVCGELRDSA---------KRSPP-----RAAAGEGGWARPPPTP 160
G N PD +G GE D +R PP + + G G + P +P
Sbjct: 346 GDPGNRGPDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSP 405
Query: 161 GAQGP--AKPPRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQP 202
G +G PR P PG RGDP +G + + ++G P
Sbjct: 406 GVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPK--GEKGDP 447
Score = 33.5 bits (75), Expect = 0.14
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 130 GVCGELRDSAKRSPPRAAAGEGGWARPPPT--PGAQGPAKPPRFPAWRPGGRGDP---NA 184
G GE R P A G +P P PG G + P P PG +G+P
Sbjct: 478 GALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPG--PRGAPGEKGEPGPRGP 535
Query: 185 EGGRAKEATRDHSDRGQPESAPAAPTHP 212
EGGR + R + PA P P
Sbjct: 536 EGGRGDFGLKGEPGRKGEKGEPADPGPP 563
Score = 28.1 bits (61), Expect = 5.8
Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 144 PRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQPE 203
PR A GE G P G +G P R G +G+P G + R PE
Sbjct: 520 PRGAPGEKGEPGPRGPEGGRGDFGLKGEPG-RKGEKGEPADPGPPGEPGPRGPRGVPGPE 578
Query: 204 SAPAAPTHP 212
P P P
Sbjct: 579 GEPGPPGDP 587
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 38.5 bits (88), Expect = 0.004
Identities = 34/100 (34%), Positives = 39/100 (39%), Gaps = 12/100 (12%)
Query: 121 APDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWR----- 175
AP TV A G+ G + A + G G PP PG GP PP P +R
Sbjct: 1381 APGTVGAP-GIAGIPQKIAVQP---GTVGPQGRRGPPGAPGEMGPQGPPGEPGFRGAPGK 1436
Query: 176 --PGGRGDPNA-EGGRAKEATRDHSDRGQPESAPAAPTHP 212
P GRG +A G R E H E AP P P
Sbjct: 1437 AGPQGRGGVSAVPGFRGDEGPIGHQGPIGQEGAPGRPGSP 1476
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 130 GVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRP------GGRGDPN 183
G+ GE + S + R G G P G G PP PA+ P G RGDP
Sbjct: 308 GLSGE-KGSPGQKGSRGLDGYQGPDGPRGPKGEAGDPGPPGLPAYSPHPSLAKGARGDPG 366
Query: 184 AEGGRAKEATR-DHSDRGQP 202
G + + ++ + D G P
Sbjct: 367 FPGAQGEPGSQGEPGDPGLP 386
Score = 28.9 bits (63), Expect = 3.4
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 142 SPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAEGGR 188
SP G+ G+ PP G G A P PG +GD A G R
Sbjct: 1210 SPGSDIHGDPGFPGPPGERGDPGEANTLPGPVGVPGQKGDQGAPGER 1256
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 121 APDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRG 180
AP V GE ++ + PP G G + P PG GP PP P PG +G
Sbjct: 249 APPPVIKRRTFQGEQSQASIQGPP-GPPGPPGPSGPLGHPGLPGPMGPPGLPG-PPGPKG 306
Query: 181 DPNAEGGRAKEATR-------DHSDRGQPESAPAAPTHPP 213
DP +G ++ R H +G P A A P
Sbjct: 307 DPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP 346
Score = 32.7 bits (73), Expect = 0.24
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 130 GVCGELRDSAKRSPP--RAAAGEGG--WARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAE 185
G GE ++ + P + AGE G A P PG +GP PP PG +G+ +
Sbjct: 536 GEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQG-VPGPKGEAGLD 594
Query: 186 GGRAKEATR-DHSDRGQPESAPAA 208
G + ++ + + DRG P P A
Sbjct: 595 GAKGEKGFQGEKGDRG-PLGLPGA 617
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 121 APDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRG 180
AP V GE ++ + PP G G + P PG GP PP P PG +G
Sbjct: 192 APPPVIKRRTFQGEQSQASIQGPP-GPPGPPGPSGPLGHPGLPGPMGPPGLPG-PPGPKG 249
Query: 181 DPNAEGGRAKEATR-------DHSDRGQPESAPAAPTHPP 213
DP +G ++ R H +G P A A P
Sbjct: 250 DPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP 289
Score = 32.7 bits (73), Expect = 0.24
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 130 GVCGELRDSAKRSPP--RAAAGEGG--WARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAE 185
G GE ++ + P + AGE G A P PG +GP PP PG +G+ +
Sbjct: 479 GEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQG-VPGPKGEAGLD 537
Query: 186 GGRAKEATR-DHSDRGQPESAPAA 208
G + ++ + + DRG P P A
Sbjct: 538 GAKGEKGFQGEKGDRG-PLGLPGA 560
>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
Length = 690
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 121 APDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRG 180
AP V GE ++ + PP G G + P PG GP PP P PG +G
Sbjct: 249 APPPVIKRRTFQGEQSQASIQGPP-GPPGPPGPSGPLGHPGLPGPMGPPGLPG-PPGPKG 306
Query: 181 DPNAEGGRAKEATR-------DHSDRGQPESAPAAPTHPP 213
DP +G ++ R H +G P A A P
Sbjct: 307 DPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP 346
Score = 32.3 bits (72), Expect = 0.31
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 149 GEGGWARPPPTPGAQGPAKPPRFPAWR--PGGRGDPNAEGGRAKEATR-DHSDRGQPESA 205
GE G A P PG GP PP P + PG +G+ +G + ++ + + DRG P
Sbjct: 542 GETGQAGSP-VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRG-PLGL 599
Query: 206 PAAP 209
P P
Sbjct: 600 PGTP 603
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 121 APDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRG 180
AP V GE ++ + PP G G + P PG GP PP P PG +G
Sbjct: 249 APPPVIKRRTFQGEQSQASIQGPP-GPPGPPGPSGPLGHPGLPGPMGPPGLPG-PPGPKG 306
Query: 181 DPNAEGGRAKEATR-------DHSDRGQPESAPAAPTHPP 213
DP +G ++ R H +G P A A P
Sbjct: 307 DPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP 346
>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
Length = 686
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 121 APDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRG 180
AP V GE ++ + PP G G + P PG GP PP P PG +G
Sbjct: 230 APPPVIKRRTFQGEQSQASIQGPP-GPPGPPGPSGPLGHPGLPGPMGPPGLPG-PPGPKG 287
Query: 181 DPNAEGGRAKEATR-------DHSDRGQPESAPAAPTHPP 213
DP +G ++ R H +G P A A P
Sbjct: 288 DPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP 327
Score = 33.9 bits (76), Expect = 0.11
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 130 GVCGELRDSAKRSPP--RAAAGEGG--WARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAE 185
G GE ++ + P + AGE G A P PG +GP PP PG +G+ +
Sbjct: 517 GEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQG-VPGPKGEAGLD 575
Query: 186 GGRAKEATR-DHSDRGQPESAPAAP 209
G + ++ + + DRG P P P
Sbjct: 576 GAKGEKGFQGEKGDRG-PLGLPGTP 599
>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
Length = 688
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 121 APDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRG 180
AP V GE ++ + PP G G + P PG GP PP P PG +G
Sbjct: 220 APPPVIKRRTFQGEQSQASIQGPP-GPPGPPGPSGPLGHPGLPGPMGPPGLPG-PPGPKG 277
Query: 181 DPNAEGGRAKEATR-------DHSDRGQPESAPAAPTHPP 213
DP +G ++ R H +G P A A P
Sbjct: 278 DPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP 317
Score = 32.7 bits (73), Expect = 0.24
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 130 GVCGELRDSAKRSPP--RAAAGEGG--WARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAE 185
G GE ++ + P + AGE G A P PG +GP PP PG +G+ +
Sbjct: 507 GEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQG-VPGPKGEAGLD 565
Query: 186 GGRAKEATR-DHSDRGQPESAPAA 208
G + ++ + + DRG P P A
Sbjct: 566 GAKGEKGFQGEKGDRG-PLGLPGA 588
>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
Length = 703
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 121 APDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRG 180
AP V GE ++ + PP G G + P PG GP PP P PG +G
Sbjct: 249 APPPVIKRRTFQGEQSQASIQGPP-GPPGPPGPSGPLGHPGLPGPMGPPGLPG-PPGPKG 306
Query: 181 DPNAEGGRAKEATR-------DHSDRGQPESAPAAPTHPP 213
DP +G ++ R H +G P A A P
Sbjct: 307 DPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP 346
>gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens]
Length = 702
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 121 APDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRG 180
AP V GE ++ + PP G G + P PG GP PP P PG +G
Sbjct: 249 APPPVIKRRTFQGEQSQASIQGPP-GPPGPPGPSGPLGHPGLPGPMGPPGLPG-PPGPKG 306
Query: 181 DPNAEGGRAKEATR-------DHSDRGQPESAPAAPTHPP 213
DP +G ++ R H +G P A A P
Sbjct: 307 DPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP 346
Score = 31.2 bits (69), Expect = 0.68
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 149 GEGGWARPPPTPGAQGPAKPPRFPAWR--PGGRGDPNAEGGRAKEATR-DHSDRGQPESA 205
GE G A P PG GP PP P + PG +G+ +G + ++ + + DRG P
Sbjct: 542 GETGQAGSP-VPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRG-PLGL 599
Query: 206 PAA 208
P A
Sbjct: 600 PGA 602
>gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]
Length = 698
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 121 APDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRG 180
AP V GE ++ + PP G G + P PG GP PP P PG +G
Sbjct: 230 APPPVIKRRTFQGEQSQASIQGPP-GPPGPPGPSGPLGHPGLPGPMGPPGLPG-PPGPKG 287
Query: 181 DPNAEGGRAKEATR-------DHSDRGQPESAPAAPTHPP 213
DP +G ++ R H +G P A A P
Sbjct: 288 DPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP 327
Score = 32.7 bits (73), Expect = 0.24
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 130 GVCGELRDSAKRSPP--RAAAGEGG--WARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAE 185
G GE ++ + P + AGE G A P PG +GP PP PG +G+ +
Sbjct: 517 GEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQG-VPGPKGEAGLD 575
Query: 186 GGRAKEATR-DHSDRGQPESAPAA 208
G + ++ + + DRG P P A
Sbjct: 576 GAKGEKGFQGEKGDRG-PLGLPGA 598
>gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens]
Length = 700
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 121 APDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRG 180
AP V GE ++ + PP G G + P PG GP PP P PG +G
Sbjct: 232 APPPVIKRRTFQGEQSQASIQGPP-GPPGPPGPSGPLGHPGLPGPMGPPGLPG-PPGPKG 289
Query: 181 DPNAEGGRAKEATR-------DHSDRGQPESAPAAPTHPP 213
DP +G ++ R H +G P A A P
Sbjct: 290 DPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP 329
Score = 32.7 bits (73), Expect = 0.24
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 130 GVCGELRDSAKRSPP--RAAAGEGG--WARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAE 185
G GE ++ + P + AGE G A P PG +GP PP PG +G+ +
Sbjct: 519 GEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQG-VPGPKGEAGLD 577
Query: 186 GGRAKEATR-DHSDRGQPESAPAA 208
G + ++ + + DRG P P A
Sbjct: 578 GAKGEKGFQGEKGDRG-PLGLPGA 600
>gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens]
Length = 705
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 121 APDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRG 180
AP V GE ++ + PP G G + P PG GP PP P PG +G
Sbjct: 237 APPPVIKRRTFQGEQSQASIQGPP-GPPGPPGPSGPLGHPGLPGPMGPPGLPG-PPGPKG 294
Query: 181 DPNAEGGRAKEATR-------DHSDRGQPESAPAAPTHPP 213
DP +G ++ R H +G P A A P
Sbjct: 295 DPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP 334
Score = 32.7 bits (73), Expect = 0.24
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 130 GVCGELRDSAKRSPP--RAAAGEGG--WARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAE 185
G GE ++ + P + AGE G A P PG +GP PP PG +G+ +
Sbjct: 524 GEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQG-VPGPKGEAGLD 582
Query: 186 GGRAKEATR-DHSDRGQPESAPAA 208
G + ++ + + DRG P P A
Sbjct: 583 GAKGEKGFQGEKGDRG-PLGLPGA 605
>gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens]
Length = 717
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 121 APDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRG 180
AP V GE ++ + PP G G + P PG GP PP P PG +G
Sbjct: 249 APPPVIKRRTFQGEQSQASIQGPP-GPPGPPGPSGPLGHPGLPGPMGPPGLPG-PPGPKG 306
Query: 181 DPNAEGGRAKEATR-------DHSDRGQPESAPAAPTHPP 213
DP +G ++ R H +G P A A P
Sbjct: 307 DPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP 346
Score = 32.7 bits (73), Expect = 0.24
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 130 GVCGELRDSAKRSPP--RAAAGEGG--WARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAE 185
G GE ++ + P + AGE G A P PG +GP PP PG +G+ +
Sbjct: 536 GEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQG-VPGPKGEAGLD 594
Query: 186 GGRAKEATR-DHSDRGQPESAPAA 208
G + ++ + + DRG P P A
Sbjct: 595 GAKGEKGFQGEKGDRG-PLGLPGA 617
>gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens]
Length = 705
Score = 38.5 bits (88), Expect = 0.004
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 121 APDTVAATSGVCGELRDSAKRSPPRAAAGEGGWARPPPTPGAQGPAKPPRFPAWRPGGRG 180
AP V GE ++ + PP G G + P PG GP PP P PG +G
Sbjct: 249 APPPVIKRRTFQGEQSQASIQGPP-GPPGPPGPSGPLGHPGLPGPMGPPGLPG-PPGPKG 306
Query: 181 DPNAEGGRAKEATR-------DHSDRGQPESAPAAPTHPP 213
DP +G ++ R H +G P A A P
Sbjct: 307 DPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEP 346
Score = 33.9 bits (76), Expect = 0.11
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 130 GVCGELRDSAKRSPP--RAAAGEGG--WARPPPTPGAQGPAKPPRFPAWRPGGRGDPNAE 185
G GE ++ + P + AGE G A P PG +GP PP PG +G+ +
Sbjct: 536 GEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQG-VPGPKGEAGLD 594
Query: 186 GGRAKEATR-DHSDRGQPESAPAAP 209
G + ++ + + DRG P P P
Sbjct: 595 GAKGEKGFQGEKGDRG-PLGLPGTP 618
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.133 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,401,966
Number of Sequences: 37866
Number of extensions: 803287
Number of successful extensions: 7120
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 607
Number of HSP's that attempted gapping in prelim test: 4642
Number of HSP's gapped (non-prelim): 2517
length of query: 213
length of database: 18,247,518
effective HSP length: 98
effective length of query: 115
effective length of database: 14,536,650
effective search space: 1671714750
effective search space used: 1671714750
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.