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Search of human proteins with 239754797
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754797 PREDICTED: hypothetical protein [Homo sapiens]
(170 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754797 PREDICTED: hypothetical protein [Homo sapiens] 355 1e-98
gi|239743415 PREDICTED: hypothetical protein [Homo sapiens] 355 1e-98
gi|239749325 PREDICTED: hypothetical protein [Homo sapiens] 268 1e-72
gi|239509122 PREDICTED: hypothetical protein [Homo sapiens] 268 1e-72
gi|169168886 PREDICTED: hypothetical protein [Homo sapiens] 51 5e-07
gi|239742988 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 41 6e-04
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 41 6e-04
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 40 7e-04
gi|239749936 PREDICTED: similar to single Ig IL-1R-related molec... 40 0.001
gi|61743975 SORCS receptor 1 isoform b [Homo sapiens] 40 0.001
gi|61743973 SORCS receptor 1 isoform a [Homo sapiens] 40 0.001
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ... 39 0.003
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ... 39 0.003
gi|169214821 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|169218002 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|169215021 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 39 0.003
gi|169214546 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 39 0.003
gi|169163057 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 38 0.004
gi|239753506 PREDICTED: hypothetical protein [Homo sapiens] 38 0.005
gi|239748159 PREDICTED: hypothetical protein XP_002346542 [Homo ... 38 0.005
gi|239742057 PREDICTED: hypothetical protein XP_002342381 [Homo ... 38 0.005
gi|169201810 PREDICTED: hypothetical protein [Homo sapiens] 37 0.006
gi|113422123 PREDICTED: hypothetical protein [Homo sapiens] 37 0.006
gi|113421705 PREDICTED: hypothetical protein [Homo sapiens] 37 0.006
>gi|239754797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 355 bits (911), Expect = 1e-98
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MMPGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAGSR 60
MMPGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAGSR
Sbjct: 1 MMPGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAGSR 60
Query: 61 GASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAA 120
GASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAA
Sbjct: 61 GASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAA 120
Query: 121 APGGRAGLYGGPRGPHHVSLPGLPTARAHRPGAWPELAPPRPRARPHAVW 170
APGGRAGLYGGPRGPHHVSLPGLPTARAHRPGAWPELAPPRPRARPHAVW
Sbjct: 121 APGGRAGLYGGPRGPHHVSLPGLPTARAHRPGAWPELAPPRPRARPHAVW 170
>gi|239743415 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 355 bits (911), Expect = 1e-98
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MMPGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAGSR 60
MMPGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAGSR
Sbjct: 1 MMPGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAGSR 60
Query: 61 GASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAA 120
GASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAA
Sbjct: 61 GASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAA 120
Query: 121 APGGRAGLYGGPRGPHHVSLPGLPTARAHRPGAWPELAPPRPRARPHAVW 170
APGGRAGLYGGPRGPHHVSLPGLPTARAHRPGAWPELAPPRPRARPHAVW
Sbjct: 121 APGGRAGLYGGPRGPHHVSLPGLPTARAHRPGAWPELAPPRPRARPHAVW 170
>gi|239749325 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 268 bits (686), Expect = 1e-72
Identities = 139/155 (89%), Positives = 139/155 (89%), Gaps = 4/155 (2%)
Query: 1 MMPGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAGSR 60
MMPGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAGSR
Sbjct: 1 MMPGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAGSR 60
Query: 61 GASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAA 120
GASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAA
Sbjct: 61 GASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAA 120
Query: 121 APGGRAGLYGGPRGPHHVSLPGLPTARAHRPGAWP 155
APGGRAGLY GP P PT HRP A P
Sbjct: 121 APGGRAGLYPRAAGPASRE-PARPT---HRPRAPP 151
>gi|239509122 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 268 bits (686), Expect = 1e-72
Identities = 139/155 (89%), Positives = 139/155 (89%), Gaps = 4/155 (2%)
Query: 1 MMPGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAGSR 60
MMPGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAGSR
Sbjct: 1 MMPGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAGSR 60
Query: 61 GASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAA 120
GASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAA
Sbjct: 61 GASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAA 120
Query: 121 APGGRAGLYGGPRGPHHVSLPGLPTARAHRPGAWP 155
APGGRAGLY GP P PT HRP A P
Sbjct: 121 APGGRAGLYPRAAGPASRE-PARPT---HRPRAPP 151
>gi|169168886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 50.8 bits (120), Expect = 5e-07
Identities = 50/153 (32%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 5 VGVGAAGLGAAHRSTAAPGRGVSVR-GTVGRQQGGPGHGNVDHLPNLGRQPRGAGSRGAS 63
VG+ AAG G A R VS G VG ++ GH V G A RGA
Sbjct: 72 VGIWAAGGGLAAAGERNSVRAVSFSSGRVGVREEAAGHLAVGAAGLTGAHADLAVGRGAE 131
Query: 64 APRAVRTGAAPEVVVQ-SGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAAAP 122
+ + AA VQ H A++RR + PA L++ R GG+ R
Sbjct: 132 LAQLLGADAAAAAAVQHEAHARRAARRRLVRAPARPAAVLADGRLQGGQGGQRRSV---- 187
Query: 123 GGRAGLYGGPRGPHHVSLPGLPTARAHRPGAWP 155
G L G PR P P P A A PGA+P
Sbjct: 188 -GAHALPGRPRVP-----PWQPPAAAGAPGAYP 214
>gi|239742988 PREDICTED: hypothetical protein [Homo sapiens]
Length = 470
Score = 45.8 bits (107), Expect = 2e-05
Identities = 50/157 (31%), Positives = 61/157 (38%), Gaps = 26/157 (16%)
Query: 5 VGVGAAGLGAAHRSTAAPGRGVSVR-GTVGRQQGGPGHGNVDHLPNLGRQPRGAGSRGAS 63
VG+ AAG G A R VS G VG ++ GH V AG GA
Sbjct: 270 VGIWAAGGGLAAAGERNSVRAVSFSSGRVGVREEAAGHLAVG----------AAGLTGAH 319
Query: 64 APRAVRT-----GAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGT 118
A A+ AA V H A++RR + PA L++ R GG+ R
Sbjct: 320 ADLALAQLLGADAAAAAAVQHEAHARRAARRRLVRAPARPAAVLADGRLQGGQGGQRRSV 379
Query: 119 AAAPGGRAGLYGGPRGPHHVSLPGLPTARAHRPGAWP 155
G L G PR P P P A A PGA+P
Sbjct: 380 -----GAHALPGRPRVP-----PWQPPAAAGAPGAYP 406
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 40.8 bits (94), Expect = 6e-04
Identities = 55/191 (28%), Positives = 70/191 (36%), Gaps = 39/191 (20%)
Query: 3 PGVGVGA-AGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGR----QPRGA 57
P G GA AG A R A PG S+ T R+ + DH P GR +P A
Sbjct: 7 PSAGAGAGAGRRPAARQVAPPGGPXSLARTHSRR-------HPDHAPPPGRPSCSRPLCA 59
Query: 58 GSRGASAPRAVRT-------------GAAPEVVVQSGHRSHA-------SKRRFLEEGEA 97
GS + P R A P V+ G + A S R
Sbjct: 60 GSSCLATPEPARAPSIAEPGPGIPVAAAKPGVLPGGGGCTGARTENPPLSPTRGDCRVPV 119
Query: 98 PARRLSERRRGGGKEESRPGTAAAPGGRAGLYGGPRGPHHVSLPGLPTARAHRPGAWPEL 157
PA +S R R G E+RPG G +AG G P+ + L + P +
Sbjct: 120 PAAPISLRWRSG--REARPG-----GPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQ 172
Query: 158 APPRPRARPHA 168
P RARPH+
Sbjct: 173 PPGNSRARPHS 183
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 40.8 bits (94), Expect = 6e-04
Identities = 56/210 (26%), Positives = 70/210 (33%), Gaps = 46/210 (21%)
Query: 3 PGVGVGAAGLGAAHRSTAAPG----RGVSVRGTVGRQ--------QGGPGHGNVDHLPNL 50
P VG AGL PG G+SV G G+Q +G PG +P +
Sbjct: 125 PKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGM 184
Query: 51 GRQ--------PRGAGSRGASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEE----GE-- 96
Q P G RG P+ + P V + G + + GE
Sbjct: 185 NGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMG 244
Query: 97 --APARRLSERRRGGGKEESRPGTAAAPG-----GRAGLYG-----GPRGPHHVSLPGLP 144
P G + +PG A APG G GL G GP GP PGLP
Sbjct: 245 PIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLP 304
Query: 145 TARAHR--------PGAWPELAPPRPRARP 166
+ R PGA E P +P
Sbjct: 305 GLKGERGPAGLPGGPGAKGEQGPAGLPGKP 334
Score = 28.1 bits (61), Expect = 3.8
Identities = 47/167 (28%), Positives = 56/167 (33%), Gaps = 15/167 (8%)
Query: 3 PGVGV-GAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLP-NLGRQ-PRGA-G 58
PG G G GL PG G +G G G PG + P N+G Q P+G G
Sbjct: 296 PGFGKPGLPGLKGERGPAGLPG-GPGAKGEQG-PAGLPGKPGLTGPPGNMGPQGPKGIPG 353
Query: 59 SRGASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGT 118
S G P+ A P +G+ +R P G PG
Sbjct: 354 SHGLPGPKGETGPAGP-----AGYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPG- 407
Query: 119 AAAPGGRAGLYGGPRGPHHVSLPGLPTARAHRPGAWPELAPPRPRAR 165
P G G+ G P P V G H A P AP P R
Sbjct: 408 ---PKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTR 451
Score = 27.7 bits (60), Expect = 5.0
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 13/65 (20%)
Query: 108 GGGKEESRPGTAAAPG----GRAGLYG-----GPRGPHHVSLPGLPTARAHRPGAWPELA 158
G PG + PG G GL G GP GP V PG+P PG E
Sbjct: 66 GPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKPGVPGL----PGKPGERG 121
Query: 159 PPRPR 163
P P+
Sbjct: 122 PYGPK 126
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 40.4 bits (93), Expect = 7e-04
Identities = 44/165 (26%), Positives = 61/165 (36%), Gaps = 12/165 (7%)
Query: 2 MPGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAGSRG 61
+PGV G GL PGRGV +G G + G PG + LP P G +G
Sbjct: 766 LPGVQ-GPPGLKGVQGEPGPPGRGV--QGPQG-EPGAPGLPGIQGLPGPRGPPGPTGEKG 821
Query: 62 ASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAAA 121
A V+ P V G R ++G+ R + +G E+ PG +
Sbjct: 822 AQGSPGVKGATGP--VGPPGASVSGPPGRDGQQGQTGLRG-TPGEKGPRGEKGEPGECSC 878
Query: 122 PGGRAGLYGGPRGPHHVSLPGLPTARAHRPGAWPELAPPRPRARP 166
P ++ G G PGL + +PG P P P
Sbjct: 879 PSQGDLIFSGMPG-----APGLWMGSSWQPGPQGPPGIPGPPGPP 918
Score = 28.5 bits (62), Expect = 2.9
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 112 EESRPGTAAAPGGRAGLYGGPRGPHHVSLPGLPTARAHR--PGAWPELAPPRPRARP 166
EE PG +PG G G P P V PGLP + R G + P P +P
Sbjct: 1034 EEGPPGMRGSPGP-PGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQP 1089
Score = 27.7 bits (60), Expect = 5.0
Identities = 40/143 (27%), Positives = 51/143 (35%), Gaps = 21/143 (14%)
Query: 3 PG-VGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAGSRG 61
PG G+ A GL +T G + G G Q G PGH P +P G+ G
Sbjct: 1302 PGPAGISAVGLKGDRGATGERG----LAGLPG-QPGPPGH------PGPPGEPGTDGAAG 1350
Query: 62 ASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAAA 121
P + P G A ++ G+A + + G GK S
Sbjct: 1351 KEGPPGKQGFYGPPG--PKGDPGAAGQK-----GQAGEKGRAGMPGGPGKSGSMG--PVG 1401
Query: 122 PGGRAGLYGGPRGPHHVSLPGLP 144
P G AG G P P PGLP
Sbjct: 1402 PPGPAGERGHPGAPGPSGSPGLP 1424
Score = 27.3 bits (59), Expect = 6.5
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 13/68 (19%)
Query: 112 EESRPGTAAAPG--GRAGLYGGPRGPHHVSLPGLPTARAH-----------RPGAWPELA 158
++ +PG PG G GL G P PGLP + RPGA E
Sbjct: 1220 KDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPG 1279
Query: 159 PPRPRARP 166
P+ RP
Sbjct: 1280 AMGPQGRP 1287
>gi|239749936 PREDICTED: similar to single Ig IL-1R-related molecule
[Homo sapiens]
Length = 304
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/88 (40%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 91 FLEEGE---APARRLSERRRGGGKEESRP---GTAAAPGGRAGLYGGPRGPHHVSLPGLP 144
FLEE E A A+ L GGG+ E P G+ A G AGL GPR P LPG
Sbjct: 16 FLEEREEIGADAQNLE----GGGRSEESPRLWGSGALRAGWAGLATGPR-PVRQRLPGSS 70
Query: 145 TARA----HRPGAWPELAPPRPRARPHA 168
A + R G W APP P A P +
Sbjct: 71 AASSASLGRRAGRW--AAPPPPGASPRS 96
>gi|61743975 SORCS receptor 1 isoform b [Homo sapiens]
Length = 1198
Score = 40.0 bits (92), Expect = 0.001
Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Query: 3 PGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQ--PRGAGSR 60
PGV G + + H S+A P + RG QG PG LP + R G R
Sbjct: 29 PGVCGGGSCCPSPHPSSA-PRSASTPRGF--SHQGRPGRAPATPLPLVVRPLFSVAPGDR 85
Query: 61 GASAPRAVRTGAAPEVVVQSGHRSHA-SKRRFLEEGEAPARRLSERRRGGGKEESRPGT 118
S RA TGA+ V +SG R + + + E GE +R R GG++E PGT
Sbjct: 86 ALSLERARGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGGQQE--PGT 142
>gi|61743973 SORCS receptor 1 isoform a [Homo sapiens]
Length = 1168
Score = 40.0 bits (92), Expect = 0.001
Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Query: 3 PGVGVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQ--PRGAGSR 60
PGV G + + H S+A P + RG QG PG LP + R G R
Sbjct: 29 PGVCGGGSCCPSPHPSSA-PRSASTPRGF--SHQGRPGRAPATPLPLVVRPLFSVAPGDR 85
Query: 61 GASAPRAVRTGAAPEVVVQSGHRSHA-SKRRFLEEGEAPARRLSERRRGGGKEESRPGT 118
S RA TGA+ V +SG R + + + E GE +R R GG++E PGT
Sbjct: 86 ALSLERARGTGASMAVAARSGRRRRSGADQEKAERGEGASRSPRGVLRDGGQQE--PGT 142
>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 4 [Homo sapiens]
Length = 588
Score = 38.5 bits (88), Expect = 0.003
Identities = 36/116 (31%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 7 VGAAGLGAAHRSTAAPGRG---VSVRGTVG-RQQGGPGHG-NVDHLPNLGRQPRGAGSRG 61
VGA G G AAP RG RG G Q+GGPG V +Q RG G RG
Sbjct: 458 VGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVRG 517
Query: 62 ASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPG 117
A R G + G+ SKRR ++ ++++ GG G
Sbjct: 518 ARGGRGGNVGGKRKA---DGYNQPDSKRRQTNNQNWGSQPIAQQPLQGGDHSGNYG 570
Score = 33.1 bits (74), Expect = 0.12
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 55 RGAGSRGA--SAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKE 112
RG G RGA +AP R A P + + + G + R RGG ++
Sbjct: 461 RGRGGRGARGAAPSRGRGAAPPR-----------GRAGYSQRGGPGSARGVRGARGGAQQ 509
Query: 113 ESRPGTAAAPGGRAGLYGGPR 133
+ G A GGR G GG R
Sbjct: 510 QRGRGVRGARGGRGGNVGGKR 530
>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Homo sapiens]
Length = 623
Score = 38.5 bits (88), Expect = 0.003
Identities = 36/116 (31%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 7 VGAAGLGAAHRSTAAPGRG---VSVRGTVG-RQQGGPGHG-NVDHLPNLGRQPRGAGSRG 61
VGA G G AAP RG RG G Q+GGPG V +Q RG G RG
Sbjct: 493 VGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVRG 552
Query: 62 ASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPG 117
A R G + G+ SKRR ++ ++++ GG G
Sbjct: 553 ARGGRGGNVGGKRKA---DGYNQPDSKRRQTNNQNWGSQPIAQQPLQGGDHSGNYG 605
Score = 33.1 bits (74), Expect = 0.12
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 55 RGAGSRGA--SAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKE 112
RG G RGA +AP R A P + + + G + R RGG ++
Sbjct: 496 RGRGGRGARGAAPSRGRGAAPPR-----------GRAGYSQRGGPGSARGVRGARGGAQQ 544
Query: 113 ESRPGTAAAPGGRAGLYGGPR 133
+ G A GGR G GG R
Sbjct: 545 QRGRGVRGARGGRGGNVGGKR 565
>gi|169214821 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 38.5 bits (88), Expect = 0.003
Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 81 GHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAAAPGGRAGLYGGPRGPHHVSL 140
GH H R L+ R+ RRRG G + P A A R G R P +
Sbjct: 48 GHTRHTYTRALLQRTHDGKERVGTRRRGQGTDPVPPSRAGARRRRTPALGLARLP---LI 104
Query: 141 PGLPTARAHRP---GAWPELAPPRP 162
PG T ++ RP W AP RP
Sbjct: 105 PGSGTRQSRRPTYQAHWAGWAPGRP 129
>gi|169218002 PREDICTED: hypothetical protein [Homo sapiens]
Length = 218
Score = 38.5 bits (88), Expect = 0.003
Identities = 50/187 (26%), Positives = 67/187 (35%), Gaps = 38/187 (20%)
Query: 6 GVGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGR----QPRGAGSRG 61
G AG A R A PG S+ T R+ + DH P GR +P AGS
Sbjct: 4 GGAGAGRSPAARQVAPPGGPSSLARTHSRR-------HPDHAPPPGRPSCSRPLCAGSSC 56
Query: 62 ASAPRAVRTGAAPE------------VVVQSG--------HRSHASKRRFLEEGEAPARR 101
+ P R + E V++ G S R PA +
Sbjct: 57 LATPEPARAPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQ 116
Query: 102 LSERRRGGGKEESRPGTAAAPGGRAGLYGGPRGPHHVSLPGLPTARAHRPGAWPELAPPR 161
+S R R G E+RPG G +AG G P+ + L + P + P
Sbjct: 117 ISLRWRSG--REARPG-----GPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQPPGN 169
Query: 162 PRARPHA 168
RARPH+
Sbjct: 170 SRARPHS 176
>gi|169215021 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 38.5 bits (88), Expect = 0.003
Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 81 GHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAAAPGGRAGLYGGPRGPHHVSL 140
GH H R L+ R+ RRRG G + P A A R G R P +
Sbjct: 48 GHTRHTYTRALLQRTHDGKERVGTRRRGQGTDPVPPSRAGARRRRTPALGLARLP---LI 104
Query: 141 PGLPTARAHRP---GAWPELAPPRP 162
PG T ++ RP W AP RP
Sbjct: 105 PGSGTRQSRRPTYQAHWAGWAPGRP 129
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 38.5 bits (88), Expect = 0.003
Identities = 49/143 (34%), Positives = 56/143 (39%), Gaps = 24/143 (16%)
Query: 5 VGVGAAGLGAAHRSTAAPGR-GVSVRGTVGRQQGGPGHGNV----------DHLPNLGRQ 53
V G +GA R+ AA GR G G R + G GHG HL
Sbjct: 852 VRAGRRRVGA--RAVAAAGRQGAGAGGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAA 909
Query: 54 PRGAGSRGASAPRAVRTGA--APEVVVQSGHRSHASKRRF---LEEGEAPARRLSERRRG 108
G R A RA R GA AP + G R S+RR L G PAR RRRG
Sbjct: 910 AAAQGVRAAQG-RAHRPGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARAALGRRRG 968
Query: 109 GGKEESRPGTAAAPGGRAGLYGG 131
GG+ A +A L GG
Sbjct: 969 GGQ-----AVGARAAHQARLAGG 986
Score = 31.6 bits (70), Expect = 0.34
Identities = 56/183 (30%), Positives = 67/183 (36%), Gaps = 31/183 (16%)
Query: 2 MPGVGVGA---AGLGAAHRSTAAPGR---GVSVRGT-VGRQQGGP--GHGNVDHLPNLGR 52
+P GVG AG GA + AP R GV G VGR G G+V+ +P
Sbjct: 499 VPATGVGGLVGAGQGAVAAAGNAPERLPAGVQGCGEEVGRGARGDRVAGGHVEVVP---- 554
Query: 53 QPRGAGSRGASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKE 112
G + A + G AP V + R L APARR RR GG
Sbjct: 555 ----VGQQLAICMLHGQLGTAPHAHVPTVLGGALGGRAGLVA--APARRECPARRRGGCW 608
Query: 113 ESRP-------GTAAAPGGRAGLYGGPRGPHH-----VSLPGLPTARAHRPGAWPELAPP 160
RP G PG + L GG G H PTAR R G +A
Sbjct: 609 PRRPRRRHGGGGGGGGPGLQDLLGGGHAGGAHGHVVVAPAAAAPTAREGRAGRHGHVAVV 668
Query: 161 RPR 163
P+
Sbjct: 669 CPQ 671
Score = 27.3 bits (59), Expect = 6.5
Identities = 32/118 (27%), Positives = 39/118 (33%), Gaps = 19/118 (16%)
Query: 8 GAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVD-----------------HLPNL 50
G G A + GR +G GR+Q GPG VD H
Sbjct: 360 GRRGRAAGGQERGGRGRRRQ-QGRRGRRQAGPGLAKVDVDVLAGALGLRWQWVLVHAGQA 418
Query: 51 GRQPRGAGSRGASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRG 108
G QP +RG P A+ A + R H R G A RL+ RG
Sbjct: 419 G-QPLQGQARGPHRPAALAQEALRAAAARPHGRRHYRVRGLRGAGPEGAGRLAGPWRG 475
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 38.5 bits (88), Expect = 0.003
Identities = 37/122 (30%), Positives = 49/122 (40%), Gaps = 14/122 (11%)
Query: 7 VGAAGLGAAHRST--AAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAG-SRGAS 63
+G G G A R+ A RGV+ GR G + + G P AG SRG
Sbjct: 289 LGGRGTGRARRAEFRVAGPRGVAEEAESGR--GWRSWPSFSAVSGGGESPDPAGCSRGK- 345
Query: 64 APRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAAAPG 123
AAPE + R+H ++ R G P R + R GGG+ G+ G
Sbjct: 346 --------AAPEEPPRVARRAHENRLRTSARGLGPGDRRGDGRFGGGRGAEGAGSGLPRG 397
Query: 124 GR 125
GR
Sbjct: 398 GR 399
>gi|169214546 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 38.5 bits (88), Expect = 0.003
Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 81 GHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAAAPGGRAGLYGGPRGPHHVSL 140
GH H R L+ R+ RRRG G + P A A R G R P +
Sbjct: 48 GHTRHTYTRALLQRTHDGKERVGTRRRGQGTDPVPPSRAGARRRRTPALGLARLP---LI 104
Query: 141 PGLPTARAHRP---GAWPELAPPRP 162
PG T ++ RP W AP RP
Sbjct: 105 PGSGTRQSRRPTYQAHWAGWAPGRP 129
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 38.5 bits (88), Expect = 0.003
Identities = 49/143 (34%), Positives = 56/143 (39%), Gaps = 24/143 (16%)
Query: 5 VGVGAAGLGAAHRSTAAPGR-GVSVRGTVGRQQGGPGHGNV----------DHLPNLGRQ 53
V G +GA R+ AA GR G G R + G GHG HL
Sbjct: 852 VRAGRRRVGA--RAVAAAGRQGAGAGGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAA 909
Query: 54 PRGAGSRGASAPRAVRTGA--APEVVVQSGHRSHASKRRF---LEEGEAPARRLSERRRG 108
G R A RA R GA AP + G R S+RR L G PAR RRRG
Sbjct: 910 AAAQGVRAAQG-RAHRPGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARAALGRRRG 968
Query: 109 GGKEESRPGTAAAPGGRAGLYGG 131
GG+ A +A L GG
Sbjct: 969 GGQ-----AVGARAAHQARLAGG 986
Score = 31.6 bits (70), Expect = 0.34
Identities = 56/183 (30%), Positives = 67/183 (36%), Gaps = 31/183 (16%)
Query: 2 MPGVGVGA---AGLGAAHRSTAAPGR---GVSVRGT-VGRQQGGP--GHGNVDHLPNLGR 52
+P GVG AG GA + AP R GV G VGR G G+V+ +P
Sbjct: 499 VPATGVGGLVGAGQGAVAAAGNAPERLPAGVQGCGEEVGRGARGDRVAGGHVEVVP---- 554
Query: 53 QPRGAGSRGASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKE 112
G + A + G AP V + R L APARR RR GG
Sbjct: 555 ----VGQQLAICMLHGQLGTAPHAHVPTVLGGALGGRAGLVA--APARRECPARRRGGCW 608
Query: 113 ESRP-------GTAAAPGGRAGLYGGPRGPHH-----VSLPGLPTARAHRPGAWPELAPP 160
RP G PG + L GG G H PTAR R G +A
Sbjct: 609 PRRPRRRHGGGGGGGGPGLQDLLGGGHAGGAHGHVVVAPAAAAPTAREGRAGRHGHVAVV 668
Query: 161 RPR 163
P+
Sbjct: 669 CPQ 671
Score = 27.3 bits (59), Expect = 6.5
Identities = 32/118 (27%), Positives = 39/118 (33%), Gaps = 19/118 (16%)
Query: 8 GAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVD-----------------HLPNL 50
G G A + GR +G GR+Q GPG VD H
Sbjct: 360 GRRGRAAGGQERGGRGRRRQ-QGRRGRRQAGPGLAKVDVDVLAGALGLRWQWVLVHAGQA 418
Query: 51 GRQPRGAGSRGASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRG 108
G QP +RG P A+ A + R H R G A RL+ RG
Sbjct: 419 G-QPLQGQARGPHRPAALAQEALRAAAARPHGRRHYRVRGLRGAGPEGAGRLAGPWRG 475
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 38.5 bits (88), Expect = 0.003
Identities = 37/122 (30%), Positives = 49/122 (40%), Gaps = 14/122 (11%)
Query: 7 VGAAGLGAAHRST--AAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAG-SRGAS 63
+G G G A R+ A RGV+ GR G + + G P AG SRG
Sbjct: 289 LGGRGTGRARRAEFRVAGPRGVAEEAESGR--GWRSWPSFSAVSGGGESPDPAGCSRGK- 345
Query: 64 APRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAAAPG 123
AAPE + R+H ++ R G P R + R GGG+ G+ G
Sbjct: 346 --------AAPEEPPRVARRAHENRLRTSARGLGPGDRRGDGRFGGGRGAEGAGSGLPRG 397
Query: 124 GR 125
GR
Sbjct: 398 GR 399
>gi|169163057 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 38.5 bits (88), Expect = 0.003
Identities = 52/191 (27%), Positives = 69/191 (36%), Gaps = 39/191 (20%)
Query: 3 PGVGVGA-AGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGR----QPRGA 57
P GA AG A R A PG S+ T R+ + DH P GR +P A
Sbjct: 27 PSARAGAGAGRSPAARQVAPPGGPSSLARTHSRR-------HPDHAPPPGRPSCSRPLCA 79
Query: 58 GSRGASAPRAVRTGAAPE------------VVVQSG--------HRSHASKRRFLEEGEA 97
GS + P R + E V++ G S R
Sbjct: 80 GSSCLATPEPARAPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPV 139
Query: 98 PARRLSERRRGGGKEESRPGTAAAPGGRAGLYGGPRGPHHVSLPGLPTARAHRPGAWPEL 157
PA ++S R R G E+RPG G +AG G P+ + L + P +
Sbjct: 140 PAAQISLRWRSG--REARPG-----GPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQ 192
Query: 158 APPRPRARPHA 168
P RARPH+
Sbjct: 193 PPGNSRARPHS 203
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 38.1 bits (87), Expect = 0.004
Identities = 37/134 (27%), Positives = 48/134 (35%), Gaps = 26/134 (19%)
Query: 35 QQGGPGHGNVDHLPNLGRQPRGAGSRGASAPRAVRTGAAPEVVVQSGHRSHASKRRFLEE 94
+ G PG + LP + G RG + P + G + A +R
Sbjct: 466 KDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGI-----------PGEKGPAGER----G 510
Query: 95 GEAPARRLSERRRGGGKEESRPGTAAAPGGRAGLYGGPRGPHHVSLPGLPTARAH--RPG 152
PA RG E R G PG R G+ G P GP PG P ++ RPG
Sbjct: 511 APGPA-----GPRGAAGEPGRDGVPGGPGMR-GMPGSPGGPGSDGKPGPPGSQGESGRPG 564
Query: 153 AWPELAPPRPRARP 166
P PR +P
Sbjct: 565 ---PPGPSGPRGQP 575
Score = 35.4 bits (80), Expect = 0.024
Identities = 52/185 (28%), Positives = 62/185 (33%), Gaps = 31/185 (16%)
Query: 8 GAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAGSRGAS---- 63
GA GL + R P + GT G + G G+ D LP P G G RG +
Sbjct: 984 GANGL-SGERGPPGPQGLPGLAGTAG-EPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPG 1041
Query: 64 APRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRG-----GGKEESR--- 115
AP A P V +G + AP S G G K E+
Sbjct: 1042 APGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERG 1101
Query: 116 ----------PGTAAAPG--GRAGLYG-----GPRGPHHVSLPGLPTARAHRPGAWPELA 158
PG APG G AG G GP GP P P + G +
Sbjct: 1102 AAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIG 1161
Query: 159 PPRPR 163
PP PR
Sbjct: 1162 PPGPR 1166
Score = 33.9 bits (76), Expect = 0.069
Identities = 48/159 (30%), Positives = 56/159 (35%), Gaps = 26/159 (16%)
Query: 8 GAAGLGAAHRSTAAPGR-GVS-VRGTVGR--QQGGPGHGNVDHLPNLGRQPRGAGSRGAS 63
G AG APG G++ RG+ G + G PG P +P G G RG
Sbjct: 771 GPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERG-- 828
Query: 64 APRAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAAAPG 123
AP G P V G A P ER GG PG A PG
Sbjct: 829 APGEKGEGGPPGVAGPPGGSGPAGP-------PGPQGVKGERGSPGG-----PGAAGFPG 876
Query: 124 GRAGLYGGPRGPHHVSLPGLPTARAHRPGAWPELAPPRP 162
R GL G P + PG P+ + G PP P
Sbjct: 877 AR-GLPGPPGSNGNPGPPG-PSGSPGKDG------PPGP 907
Score = 32.0 bits (71), Expect = 0.26
Identities = 40/154 (25%), Positives = 50/154 (32%), Gaps = 15/154 (9%)
Query: 8 GAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAGS----RGAS 63
G G + APG+ G G GP N + P P G G G
Sbjct: 576 GVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPP 635
Query: 64 APRAVR----TGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTA 119
P+ ++ TG P G + + AP + G E PG A
Sbjct: 636 GPQGLQGLPGTGGPP------GENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLA 689
Query: 120 AAPGGRAGL-YGGPRGPHHVSLPGLPTARAHRPG 152
APG R G GP G + P P A PG
Sbjct: 690 GAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPG 723
Score = 28.9 bits (63), Expect = 2.2
Identities = 44/180 (24%), Positives = 56/180 (31%), Gaps = 36/180 (20%)
Query: 8 GAAGLGAAHRSTAAPGRGVSVRGTVGRQ-QGGPGHGNVDHLPNLGRQPRGAGSRGASAPR 66
G AG A PG G RG G + +GGP P + P G+G G P+
Sbjct: 807 GPAGFPGAPGQNGEPG-GKGERGAPGEKGEGGP--------PGVAGPPGGSGPAGPPGPQ 857
Query: 67 AVR----TGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAAAP 122
V+ + P G R P S + G G +P
Sbjct: 858 GVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSP 917
Query: 123 G--------------GRAGLYGGPRGPHHVSLPGLPTAR--AHRPGAWPELAPPRPRARP 166
G G G G P P + + G+ AR A PG P PR P
Sbjct: 918 GVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGM------PGPRGSP 971
Score = 28.1 bits (61), Expect = 3.8
Identities = 36/140 (25%), Positives = 47/140 (33%), Gaps = 9/140 (6%)
Query: 24 RGVSVRGTVGRQQGGPGHGNVDHLPNLGRQPRGAGSRGASAPRAVRTGAAPEVVVQSGHR 83
RG R + G PG + LP P G RGA R P + +G R
Sbjct: 266 RGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGER-----GRPGLPGAAGAR 320
Query: 84 SHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAAAPG--GRAGLYG--GPRGPHHVS 139
+ R + P + G + G A +PG G G G GP+G
Sbjct: 321 GNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQ 380
Query: 140 LPGLPTARAHRPGAWPELAP 159
P P PG E+ P
Sbjct: 381 GPPGPPGINGSPGGKGEMGP 400
>gi|239753506 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 37.7 bits (86), Expect = 0.005
Identities = 37/122 (30%), Positives = 47/122 (38%), Gaps = 14/122 (11%)
Query: 7 VGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLG-RQPRGAGSRGASAP 65
V +GL R++ PGRG G G + V +G R PR G R A P
Sbjct: 55 VAKSGLLGTWRASPRPGRGPGSAGRCGPSEARHREARVPRRQEVGPRTPRLLGRRSAHGP 114
Query: 66 RAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRP--GTAAAPG 123
+R AP V G + + EG+ P GG E RP G+AAA
Sbjct: 115 PPLR--VAPARVASQGRQPQLPADEKVGEGDWP---------GGWGEALRPRAGSAAAST 163
Query: 124 GR 125
R
Sbjct: 164 DR 165
>gi|239748159 PREDICTED: hypothetical protein XP_002346542 [Homo
sapiens]
Length = 246
Score = 37.7 bits (86), Expect = 0.005
Identities = 37/122 (30%), Positives = 47/122 (38%), Gaps = 14/122 (11%)
Query: 7 VGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLG-RQPRGAGSRGASAP 65
V +GL R++ PGRG G G + V +G R PR G R A P
Sbjct: 105 VAKSGLLGTWRASPRPGRGPGSAGRCGPSEARHREARVPRRQEVGPRTPRLLGRRSAHGP 164
Query: 66 RAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRP--GTAAAPG 123
+R AP V G + + EG+ P GG E RP G+AAA
Sbjct: 165 PPLR--VAPARVASQGRQPQLPADEKVGEGDWP---------GGWGEALRPRAGSAAAST 213
Query: 124 GR 125
R
Sbjct: 214 DR 215
>gi|239742057 PREDICTED: hypothetical protein XP_002342381 [Homo
sapiens]
Length = 196
Score = 37.7 bits (86), Expect = 0.005
Identities = 37/122 (30%), Positives = 47/122 (38%), Gaps = 14/122 (11%)
Query: 7 VGAAGLGAAHRSTAAPGRGVSVRGTVGRQQGGPGHGNVDHLPNLG-RQPRGAGSRGASAP 65
V +GL R++ PGRG G G + V +G R PR G R A P
Sbjct: 55 VAKSGLLGTWRASPRPGRGPGSAGRCGPSEARHREARVPRRQEVGPRTPRLLGRRSAHGP 114
Query: 66 RAVRTGAAPEVVVQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRP--GTAAAPG 123
+R AP V G + + EG+ P GG E RP G+AAA
Sbjct: 115 PPLR--VAPARVASQGRQPQLPADEKVGEGDWP---------GGWGEALRPRAGSAAAST 163
Query: 124 GR 125
R
Sbjct: 164 DR 165
>gi|169201810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 177
Score = 37.4 bits (85), Expect = 0.006
Identities = 38/112 (33%), Positives = 42/112 (37%), Gaps = 9/112 (8%)
Query: 62 ASAPRAVR---TGAAPEVVVQSGHRSHASKRRF-LEEGEAPARRLSERRRGGGKEESRPG 117
ASAP A P + G R RF L E A R RR G S P
Sbjct: 13 ASAPLGTEFAGPAATPAFLPGRGARRTRDPLRFRLNEFRAERRESCVSRRAAGP--SVPR 70
Query: 118 TAAAPGGRAGLYGGPRGPHHVSLPGLPTA---RAHRPGAWPELAPPRPRARP 166
+ A+PGG A RGP + PG P A R G PP R RP
Sbjct: 71 SLASPGGLAQGQESQRGPTESARPGQPAAEQLREQASGIREAQRPPPGRPRP 122
>gi|113422123 PREDICTED: hypothetical protein [Homo sapiens]
Length = 177
Score = 37.4 bits (85), Expect = 0.006
Identities = 38/112 (33%), Positives = 42/112 (37%), Gaps = 9/112 (8%)
Query: 62 ASAPRAVR---TGAAPEVVVQSGHRSHASKRRF-LEEGEAPARRLSERRRGGGKEESRPG 117
ASAP A P + G R RF L E A R RR G S P
Sbjct: 13 ASAPLGTEFAGPAATPAFLPGRGARRTRDPLRFRLNEFRAERRESCVSRRAAGP--SVPR 70
Query: 118 TAAAPGGRAGLYGGPRGPHHVSLPGLPTA---RAHRPGAWPELAPPRPRARP 166
+ A+PGG A RGP + PG P A R G PP R RP
Sbjct: 71 SLASPGGLAQGQESQRGPTESARPGQPAAEQLREQASGIREAQRPPPGRPRP 122
>gi|113421705 PREDICTED: hypothetical protein [Homo sapiens]
Length = 177
Score = 37.4 bits (85), Expect = 0.006
Identities = 38/112 (33%), Positives = 42/112 (37%), Gaps = 9/112 (8%)
Query: 62 ASAPRAVR---TGAAPEVVVQSGHRSHASKRRF-LEEGEAPARRLSERRRGGGKEESRPG 117
ASAP A P + G R RF L E A R RR G S P
Sbjct: 13 ASAPLGTEFAGPAATPAFLPGRGARRTRDPLRFRLNEFRAERRESCVSRRAAGP--SVPR 70
Query: 118 TAAAPGGRAGLYGGPRGPHHVSLPGLPTA---RAHRPGAWPELAPPRPRARP 166
+ A+PGG A RGP + PG P A R G PP R RP
Sbjct: 71 SLASPGGLAQGQESQRGPTESARPGQPAAEQLREQASGIREAQRPPPGRPRP 122
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,555,905
Number of Sequences: 37866
Number of extensions: 617884
Number of successful extensions: 3693
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 547
Number of HSP's that attempted gapping in prelim test: 3050
Number of HSP's gapped (non-prelim): 1179
length of query: 170
length of database: 18,247,518
effective HSP length: 95
effective length of query: 75
effective length of database: 14,650,248
effective search space: 1098768600
effective search space used: 1098768600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.