Guide to the Human Genome
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Name: LOC100287789 Sequence: fasta or formatted (196aa) NCBI GI: 239742057
Description:

PREDICTED: hypothetical protein XP_002342381

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         26           3
 C cysteine            0.5          1           1
 D aspartate           3.1          6           1
 E glutamate           6.1         12           1
 F phenylalanine       1.5          3           1
 G glycine            14.3         28           2
 H histidine           2.0          4           1
 I isoleucine          0.0          0           0
 K lysine              2.6          5           1
 L leucine             5.6         11           2
 M methionine          0.5          1           1
 N asparagine          0.5          1           1
 P proline            11.2         22           3
 Q glutamine           3.1          6           1
 R arginine           17.3         34           3
 S serine              7.7         15           1
 T threonine           3.1          6           1
 V valine              4.1          8           1
 W tryptophan          3.1          6           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342381 
LOC100293766          1.000   PREDICTED: hypothetical protein 
LOC100290093          0.896   PREDICTED: hypothetical protein XP_002346542 
LOC100291076          0.044   PREDICTED: hypothetical protein XP_002347846 
LOC100291634          0.041   PREDICTED: hypothetical protein XP_002346062 
LOC100129810          0.041   PREDICTED: hypothetical protein 
LOC100287232          0.041   PREDICTED: hypothetical protein XP_002342816 
LOC100129810          0.041   PREDICTED: hypothetical protein 
LOC100287232          0.041   PREDICTED: hypothetical protein 
ZNF469                0.041   zinc finger protein 469 
LOC728650             0.041   PREDICTED: hypothetical protein 
LOC100293975          0.039   PREDICTED: hypothetical protein 
LOC100293375          0.039   PREDICTED: hypothetical protein 
LOC65998              0.036   hypothetical protein LOC65998 
FLJ37078              0.036   hypothetical protein LOC222183 
HNRNPUL2              0.036   heterogeneous nuclear ribonucleoprotein U-like 2 [H...
LOC100292370          0.036   PREDICTED: hypothetical protein 
LOC100290812          0.036   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.036   PREDICTED: hypothetical protein XP_002343496 
LOC100129810          0.034   PREDICTED: hypothetical protein 
LOC100290023          0.034   PREDICTED: hypothetical protein XP_002348147 
LOC100129810          0.034   PREDICTED: hypothetical protein 
AGER                  0.031   advanced glycosylation end product-specific receptor...
LOC100287920          0.031   PREDICTED: hypothetical protein XP_002344198 
SMAD6                 0.031   SMAD family member 6 isoform 1 
ALPK3                 0.031   alpha-kinase 3 
ITPKB                 0.031   1D-myo-inositol-trisphosphate 3-kinase B 
LOC100288473          0.031   PREDICTED: hypothetical protein XP_002343336 
TAF4                  0.031   TBP-associated factor 4 
LOC731551             0.028   PREDICTED: similar to ectonucleotide pyrophosphatas...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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