Guide to the Human Genome
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Name: LOC100129810 Sequence: fasta or formatted (170aa) NCBI GI: 239743415
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {155aa} PREDICTED: hypothetical protein
alt prot {155aa} PREDICTED: hypothetical protein
alt mRNA {170aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.7         25           3
 C cysteine            0.0          0           0
 D aspartate           0.6          1           1
 E glutamate           4.7          8           2
 F phenylalanine       0.6          1           1
 G glycine            18.8         32           3
 H histidine           5.3          9           2
 I isoleucine          0.0          0           0
 K lysine              1.2          2           1
 L leucine             5.3          9           1
 M methionine          1.2          2           2
 N asparagine          1.2          2           1
 P proline            11.8         20           2
 Q glutamine           2.4          4           2
 R arginine           14.7         25           3
 S serine              5.9         10           1
 T threonine           2.9          5           1
 V valine              7.1         12           3
 W tryptophan          1.2          2           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129810          1.000   PREDICTED: hypothetical protein 
LOC100129810          0.736   PREDICTED: hypothetical protein 
LOC100129810          0.736   PREDICTED: hypothetical protein 
LOC100131774          0.079   PREDICTED: hypothetical protein 
LOC100131774          0.064   PREDICTED: hypothetical protein 
LOC339742             0.048   PREDICTED: hypothetical protein 
COL10A1               0.048   type X collagen alpha 1 precursor 
COL16A1               0.045   alpha 1 type XVI collagen precursor 
LOC100294402          0.045   PREDICTED: similar to single Ig IL-1R-related molec...
SORCS1                0.045   SORCS receptor 1 isoform b 
SORCS1                0.045   SORCS receptor 1 isoform a 
SYNCRIP               0.042   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.042   synaptotagmin binding, cytoplasmic RNA interacting ...
LOC100128997          0.042   PREDICTED: hypothetical protein 
LOC100133638          0.042   PREDICTED: hypothetical protein 
LOC100128997          0.042   PREDICTED: hypothetical protein 
LOC728767             0.042   PREDICTED: hypothetical protein 
LOC100291533          0.042   PREDICTED: hypothetical protein XP_002347080 
LOC100128997          0.042   PREDICTED: hypothetical protein 
LOC728767             0.042   PREDICTED: hypothetical protein 
LOC100288002          0.042   PREDICTED: hypothetical protein XP_002342946 
LOC339742             0.042   PREDICTED: hypothetical protein 
COL3A1                0.039   collagen type III alpha 1 preproprotein 
LOC100293766          0.039   PREDICTED: hypothetical protein 
LOC100290093          0.039   PREDICTED: hypothetical protein XP_002346542 
LOC100287789          0.039   PREDICTED: hypothetical protein XP_002342381 
LOC728940             0.036   PREDICTED: hypothetical protein 
LOC728940             0.036   PREDICTED: hypothetical protein 
LOC728940             0.036   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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