Guide to the Human Genome
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Name: LOC100129810 Sequence: fasta or formatted (155aa) NCBI GI: 239509122
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {170aa} PREDICTED: hypothetical protein
alt mRNA {155aa} PREDICTED: hypothetical protein
alt prot {170aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.1         25           3
 C cysteine            0.0          0           0
 D aspartate           0.6          1           1
 E glutamate           5.2          8           2
 F phenylalanine       0.6          1           1
 G glycine            18.7         29           3
 H histidine           3.9          6           1
 I isoleucine          0.0          0           0
 K lysine              1.3          2           1
 L leucine             3.9          6           1
 M methionine          1.3          2           2
 N asparagine          1.3          2           1
 P proline            11.0         17           2
 Q glutamine           2.6          4           2
 R arginine           16.1         25           3
 S serine              6.5         10           1
 T threonine           3.2          5           1
 V valine              7.1         11           3
 W tryptophan          0.0          0           0
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129810          1.000   PREDICTED: hypothetical protein 
LOC100129810          0.835   PREDICTED: hypothetical protein 
LOC100129810          0.835   PREDICTED: hypothetical protein 
LOC100131774          0.069   PREDICTED: hypothetical protein 
LOC100293766          0.055   PREDICTED: hypothetical protein 
LOC100290093          0.055   PREDICTED: hypothetical protein XP_002346542 
LOC100287789          0.055   PREDICTED: hypothetical protein XP_002342381 
LOC728767             0.052   PREDICTED: hypothetical protein 
LOC728767             0.052   PREDICTED: hypothetical protein 
LOC100131774          0.052   PREDICTED: hypothetical protein 
SORCS1                0.052   SORCS receptor 1 isoform b 
SORCS1                0.052   SORCS receptor 1 isoform a 
PANK1                 0.052   pantothenate kinase 1 isoform alpha 
LOC100293107          0.048   PREDICTED: hypothetical protein 
LOC100290679          0.048   PREDICTED: hypothetical protein XP_002347834 
LOC100288571          0.048   PREDICTED: hypothetical protein XP_002343612 
SYNCRIP               0.048   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.048   synaptotagmin binding, cytoplasmic RNA interacting ...
LOC100291533          0.048   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.048   PREDICTED: hypothetical protein XP_002342946 
AGAP2                 0.045   centaurin, gamma 1 isoform PIKE-L 
LOC100133885          0.045   PREDICTED: hypothetical protein 
LOC100292124          0.045   PREDICTED: hypothetical protein XP_002346387 
LOC100132605          0.045   PREDICTED: hypothetical protein 
PPP1R10               0.041   protein phosphatase 1, regulatory subunit 10 
LOC100293604          0.041   PREDICTED: hypothetical protein 
LOC100294439          0.041   PREDICTED: similar to Os05g0242100 
LOC100289721          0.041   PREDICTED: hypothetical protein XP_002347280 
LOC100290946          0.041   PREDICTED: hypothetical protein XP_002347121 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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