Guide to the Human Genome
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Name: LOC100128997 Sequence: fasta or formatted (275aa) NCBI GI: 169214821
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {275aa} PREDICTED: hypothetical protein
alt mRNA {275aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         27           2
 C cysteine            2.2          6           1
 D aspartate           1.5          4           1
 E glutamate           2.5          7           1
 F phenylalanine       2.2          6           1
 G glycine            11.6         32           2
 H histidine           4.0         11           1
 I isoleucine          1.1          3           1
 K lysine              1.5          4           1
 L leucine            10.2         28           2
 M methionine          0.4          1           1
 N asparagine          0.4          1           1
 P proline             9.8         27           2
 Q glutamine           4.0         11           1
 R arginine           15.3         42           4
 S serine              9.1         25           4
 T threonine           9.5         26           3
 V valine              1.5          4           1
 W tryptophan          2.2          6           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128997          1.000   PREDICTED: hypothetical protein 
LOC100128997          1.000   PREDICTED: hypothetical protein 
LOC100130128          0.025   PREDICTED: hypothetical protein 
LOC100130128          0.025   PREDICTED: hypothetical protein 
LOC100130128          0.025   PREDICTED: hypothetical protein 
ARHGAP23              0.025   Rho GTPase activating protein 23 
LOC100129810          0.025   PREDICTED: hypothetical protein 
LOC100129810          0.025   PREDICTED: hypothetical protein 
LOC338758             0.024   PREDICTED: hypothetical protein 
LOC100289661          0.024   PREDICTED: hypothetical protein 
LOC338758             0.024   PREDICTED: hypothetical protein 
LOC100289661          0.024   PREDICTED: hypothetical protein XP_002343723 
LOC338758             0.024   PREDICTED: hypothetical protein 
LOC100134152          0.022   PREDICTED: similar to synaptotagmin XV-b 
TMEM88B               0.022   PREDICTED: hypothetical protein LOC643965 
TMEM88B               0.022   PREDICTED: hypothetical protein LOC643965 
KLRG2                 0.022   killer cell lectin-like receptor subfamily G, member...
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
LOC100131455          0.018   PREDICTED: hypothetical protein 
ZDHHC1                0.018   zinc finger, DHHC-type containing 1 
FLJ22184              0.018   PREDICTED: hypothetical protein LOC80164 
LOC100131455          0.016   PREDICTED: hypothetical protein 
LOC400236             0.016   PREDICTED: hypothetical protein 
LOC100131455          0.016   PREDICTED: hypothetical protein 
LOC400236             0.016   PREDICTED: hypothetical protein 
MUPCDH                0.016   mucin and cadherin-like isoform 1 
LOC100292909          0.014   PREDICTED: hypothetical protein 
LOC100129810          0.014   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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