Guide to the Human Genome
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Name: LOC100294402 Sequence: fasta or formatted (304aa) NCBI GI: 239749936
Description:

PREDICTED: similar to single Ig IL-1R-related molecule

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         23           2
 C cysteine            1.3          4           1
 D aspartate           5.9         18           2
 E glutamate           6.2         19           2
 F phenylalanine       2.6          8           1
 G glycine             9.9         30           3
 H histidine           1.6          5           1
 I isoleucine          1.6          5           1
 K lysine              1.3          4           1
 L leucine            11.2         34           3
 M methionine          1.0          3           1
 N asparagine          2.0          6           1
 P proline             8.9         27           4
 Q glutamine           3.9         12           2
 R arginine           11.5         35           2
 S serine             10.2         31           2
 T threonine           2.6          8           1
 V valine              6.6         20           2
 W tryptophan          3.0          9           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to single Ig IL-1R-related molec... 
SIGIRR                0.646   single Ig IL-1R-related molecule 
SIGIRR                0.646   single Ig IL-1R-related molecule 
SIGIRR                0.646   single Ig IL-1R-related molecule 
LOC100129810          0.025   PREDICTED: hypothetical protein 
LOC100129810          0.025   PREDICTED: hypothetical protein 
ABCB10                0.018   ATP-binding cassette, sub-family B, member 10 [Homo...
FLJ37078              0.018   hypothetical protein LOC222183 
SDK1                  0.017   sidekick 1 
IL18R1                0.017   interleukin 18 receptor 1 precursor 
LOC100290946          0.017   PREDICTED: hypothetical protein XP_002347121 
LOC643355             0.017   PREDICTED: hypothetical protein 
LOC100288840          0.017   PREDICTED: hypothetical protein XP_002344246 
LOC643355             0.017   PREDICTED: hypothetical protein 
IL1RAP                0.017   interleukin 1 receptor accessory protein isoform 1 [H...
DNAH2                 0.017   dynein heavy chain domain 3 
MICALL1               0.017   molecule interacting with Rab13 
IER5                  0.013   immediate early response 5 
TAOK2                 0.013   TAO kinase 2 isoform 1 
ATXN2                 0.013   ataxin 2 
LOC729806             0.012   PREDICTED: similar to hCG1725380 
LOC729806             0.012   PREDICTED: similar to hCG1725380 
LOC729806             0.012   PREDICTED: similar to hCG1725380 
CLIC6                 0.012   chloride intracellular channel 6 
LOC729370             0.012   PREDICTED: hypothetical protein 
SYN3                  0.012   synapsin III isoform IIIg 
SYN3                  0.012   synapsin III isoform IIIa 
RAB11FIP3             0.010   rab11-family interacting protein 3 isoform 1 
LOC100128105          0.010   PREDICTED: hypothetical protein 
LOC100293065          0.010   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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