Guide to the Human Genome
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Name: LOC728940 Sequence: fasta or formatted (177aa) NCBI GI: 113422123
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {177aa} PREDICTED: hypothetical protein
alt mRNA {177aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         22           2
 C cysteine            3.4          6           1
 D aspartate           1.1          2           1
 E glutamate           6.2         11           1
 F phenylalanine       4.0          7           1
 G glycine             9.0         16           2
 H histidine           1.1          2           1
 I isoleucine          0.6          1           1
 K lysine              0.6          1           1
 L leucine             6.8         12           1
 M methionine          1.7          3           1
 N asparagine          1.1          2           1
 P proline            13.0         23           3
 Q glutamine           5.6         10           1
 R arginine           15.8         28           2
 S serine              9.6         17           2
 T threonine           2.8          5           1
 V valine              2.8          5           1
 W tryptophan          0.6          1           1
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728940             1.000   PREDICTED: hypothetical protein 
LOC728940             1.000   PREDICTED: hypothetical protein 
LOC100293375          0.053   PREDICTED: hypothetical protein 
LOC100131091          0.041   PREDICTED: hypothetical protein 
LOC100131091          0.041   PREDICTED: hypothetical protein 
C6orf64               0.038   hypothetical protein LOC55776 
LOC100129810          0.035   PREDICTED: hypothetical protein 
LOC100129810          0.035   PREDICTED: hypothetical protein 
ADRA2A                0.035   alpha-2A-adrenergic receptor 
LOC100293644          0.032   PREDICTED: hypothetical protein 
LOC100287563          0.032   PREDICTED: hypothetical protein 
LOC100287563          0.032   PREDICTED: hypothetical protein XP_002343733 
FLJ37078              0.032   hypothetical protein LOC222183 
LOC100292156          0.032   PREDICTED: hypothetical protein 
DDN                   0.032   dendrin 
LOC338758             0.029   PREDICTED: hypothetical protein 
LOC338758             0.029   PREDICTED: hypothetical protein 
NOM1                  0.029   nucleolar protein with MIF4G domain 1 
C6orf186              0.029   chromosome 6 open reading frame 186 
ZNF469                0.029   zinc finger protein 469 
GLI2                  0.026   GLI-Kruppel family member GLI2 
LOC338758             0.026   PREDICTED: hypothetical protein 
SHANK3                0.026   SH3 and multiple ankyrin repeat domains 3 
SYN1                  0.026   synapsin I isoform Ia 
SYN1                  0.026   synapsin I isoform Ib 
LMTK3                 0.026   lemur tyrosine kinase 3 
RASSF5                0.023   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF5                0.023   Ras association (RalGDS/AF-6) domain family 5 isofor...
LOC100288568          0.023   PREDICTED: hypothetical protein XP_002343338 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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