Guide to the Human Genome
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Name: LOC100131774 Sequence: fasta or formatted (278aa) NCBI GI: 169168886
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {295aa} PREDICTED: hypothetical protein
alt prot {470aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.7         52           6
 C cysteine            0.4          1           1
 D aspartate           2.9          8           1
 E glutamate           5.0         14           3
 F phenylalanine       1.1          3           1
 G glycine            17.6         49           3
 H histidine           4.7         13           1
 I isoleucine          1.4          4           1
 K lysine              1.8          5           1
 L leucine             7.2         20           2
 M methionine          1.8          5           1
 N asparagine          0.4          1           1
 P proline             6.8         19           2
 Q glutamine           3.2          9           1
 R arginine            9.7         27           3
 S serine              4.7         13           2
 T threonine           2.2          6           1
 V valine              6.5         18           2
 W tryptophan          2.5          7           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131774          0.973   PREDICTED: hypothetical protein 
LOC100131774          0.967   PREDICTED: hypothetical protein 
LOC100292370          0.053   PREDICTED: hypothetical protein 
LOC100129810          0.048   PREDICTED: hypothetical protein 
LOC100129810          0.048   PREDICTED: hypothetical protein 
LOC100129810          0.037   PREDICTED: hypothetical protein 
LOC100129810          0.037   PREDICTED: hypothetical protein 
POU4F1                0.035   POU domain, class 4, transcription factor 1 
PPP1R10               0.035   protein phosphatase 1, regulatory subunit 10 
LOC728767             0.035   PREDICTED: hypothetical protein 
LOC728767             0.035   PREDICTED: hypothetical protein 
LOC100290946          0.033   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.033   PREDICTED: hypothetical protein XP_002344246 
ONECUT3               0.033   one cut homeobox 3 
MAF                   0.031   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.031   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
MN1                   0.031   meningioma  1 
CHSY3                 0.031   chondroitin sulfate synthase 3 
LOC100287063          0.031   PREDICTED: hypothetical protein 
LOC100293136          0.031   PREDICTED: hypothetical protein 
LOC100290831          0.031   PREDICTED: hypothetical protein XP_002347799 
LOC100287562          0.031   PREDICTED: hypothetical protein XP_002343591 
LOC100293107          0.029   PREDICTED: hypothetical protein 
LOC100131455          0.029   PREDICTED: hypothetical protein 
LOC100290679          0.029   PREDICTED: hypothetical protein XP_002347834 
LOC100131455          0.029   PREDICTED: hypothetical protein 
LOC100288571          0.029   PREDICTED: hypothetical protein XP_002343612 
LOC100287063          0.029   PREDICTED: hypothetical protein XP_002342368 
LOC645249             0.029   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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