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Search of human proteins with 239754620
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754620 PREDICTED: hypothetical protein [Homo sapiens]
(551 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754620 PREDICTED: hypothetical protein [Homo sapiens] 1150 0.0
gi|239749167 PREDICTED: hypothetical protein XP_002346933 [Homo ... 402 e-112
gi|239743236 PREDICTED: hypothetical protein XP_002342810 [Homo ... 259 6e-69
gi|239508911 PREDICTED: hypothetical protein [Homo sapiens] 259 6e-69
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ... 46 8e-05
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ... 46 8e-05
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 41 0.003
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 41 0.003
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 40 0.004
gi|118498339 EMI domain containing 2 [Homo sapiens] 40 0.004
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 40 0.006
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 40 0.006
gi|169204521 PREDICTED: hypothetical protein [Homo sapiens] 40 0.007
gi|169205149 PREDICTED: hypothetical protein [Homo sapiens] 40 0.007
gi|169204400 PREDICTED: hypothetical protein [Homo sapiens] 40 0.007
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 39 0.012
gi|122937321 UNC homeobox [Homo sapiens] 39 0.012
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 39 0.016
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 39 0.016
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 38 0.021
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 38 0.028
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 37 0.036
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 37 0.047
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 37 0.047
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 37 0.047
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 37 0.047
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 37 0.047
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 37 0.047
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 37 0.061
gi|4505777 PHD finger protein 1 isoform a [Homo sapiens] 37 0.061
>gi|239754620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 551
Score = 1150 bits (2976), Expect = 0.0
Identities = 551/551 (100%), Positives = 551/551 (100%)
Query: 1 MQQRWGYRRGWEPGLGVFRKEEIRTQEGAGVQGARAAVPNLLTCRRLCPERWVMAEEAGG 60
MQQRWGYRRGWEPGLGVFRKEEIRTQEGAGVQGARAAVPNLLTCRRLCPERWVMAEEAGG
Sbjct: 1 MQQRWGYRRGWEPGLGVFRKEEIRTQEGAGVQGARAAVPNLLTCRRLCPERWVMAEEAGG 60
Query: 61 TSGPRVPLLKRESTTGLKLGGSGKFEGMGGCGRRELVKKSEMSMKSSRLGCSGVRSGWIM 120
TSGPRVPLLKRESTTGLKLGGSGKFEGMGGCGRRELVKKSEMSMKSSRLGCSGVRSGWIM
Sbjct: 61 TSGPRVPLLKRESTTGLKLGGSGKFEGMGGCGRRELVKKSEMSMKSSRLGCSGVRSGWIM 120
Query: 121 SALPTRQLQGRRAGLSHGEESVRDVGQKAIEVQEVPPTRLLLWVPQQHGDHTGEELFAPL 180
SALPTRQLQGRRAGLSHGEESVRDVGQKAIEVQEVPPTRLLLWVPQQHGDHTGEELFAPL
Sbjct: 121 SALPTRQLQGRRAGLSHGEESVRDVGQKAIEVQEVPPTRLLLWVPQQHGDHTGEELFAPL 180
Query: 181 LRRRPPAFRLGRQSRQQPLESSHCPDLPYHPSPGSSGQQDRGLPPAAPVFPGETCLSVYC 240
LRRRPPAFRLGRQSRQQPLESSHCPDLPYHPSPGSSGQQDRGLPPAAPVFPGETCLSVYC
Sbjct: 181 LRRRPPAFRLGRQSRQQPLESSHCPDLPYHPSPGSSGQQDRGLPPAAPVFPGETCLSVYC 240
Query: 241 RTKATLKPVDQLGPGSNNVQWPHRGPLELGVFEDENTVPVQASGLFHYQMGKSRSSPGRQ 300
RTKATLKPVDQLGPGSNNVQWPHRGPLELGVFEDENTVPVQASGLFHYQMGKSRSSPGRQ
Sbjct: 241 RTKATLKPVDQLGPGSNNVQWPHRGPLELGVFEDENTVPVQASGLFHYQMGKSRSSPGRQ 300
Query: 301 VPICSQRFSEGEEAPRRKRNICTEKRSRPADPPFSPTGFRLIIYTGPSTPGNFAPGHWAR 360
VPICSQRFSEGEEAPRRKRNICTEKRSRPADPPFSPTGFRLIIYTGPSTPGNFAPGHWAR
Sbjct: 301 VPICSQRFSEGEEAPRRKRNICTEKRSRPADPPFSPTGFRLIIYTGPSTPGNFAPGHWAR 360
Query: 361 PRVRALLWDAGRGAAAGRGLCALGGTKRGSQAATGAQPSVATWRAVLPRTPPPSPPGSQG 420
PRVRALLWDAGRGAAAGRGLCALGGTKRGSQAATGAQPSVATWRAVLPRTPPPSPPGSQG
Sbjct: 361 PRVRALLWDAGRGAAAGRGLCALGGTKRGSQAATGAQPSVATWRAVLPRTPPPSPPGSQG 420
Query: 421 RQGPEPPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPGQRVAVRRRHHEVTAVD 480
RQGPEPPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPGQRVAVRRRHHEVTAVD
Sbjct: 421 RQGPEPPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPGQRVAVRRRHHEVTAVD 480
Query: 481 DLRAEQAARAAPETRVLRVCVRVRVWAGRDPRDLQARGQTCQRAGHGCRRRNRLVPAPRS 540
DLRAEQAARAAPETRVLRVCVRVRVWAGRDPRDLQARGQTCQRAGHGCRRRNRLVPAPRS
Sbjct: 481 DLRAEQAARAAPETRVLRVCVRVRVWAGRDPRDLQARGQTCQRAGHGCRRRNRLVPAPRS 540
Query: 541 AGNSSWPAGPH 551
AGNSSWPAGPH
Sbjct: 541 AGNSSWPAGPH 551
>gi|239749167 PREDICTED: hypothetical protein XP_002346933 [Homo
sapiens]
Length = 399
Score = 402 bits (1032), Expect = e-112
Identities = 213/280 (76%), Positives = 224/280 (80%), Gaps = 23/280 (8%)
Query: 1 MQQRWGYRRGWEPGLGVFRKEEIRTQEGAGVQGARAAVPNLLTCRRLCPERWVMAEEAGG 60
MQQRWGYRRGWEPGLGVFRKEEIRTQEGAGVQGARAAVP+LLTCRRLCPERWVMAEEAGG
Sbjct: 1 MQQRWGYRRGWEPGLGVFRKEEIRTQEGAGVQGARAAVPSLLTCRRLCPERWVMAEEAGG 60
Query: 61 TSGPRVPLLKRESTTGLKLGGSGKFEGMGGCGRRELVKKSEMSMKSSRLGCSGVRSGWIM 120
TSGPRVPLLKRESTTGLKLGGSGKFEGMGGCGRRELVKKSEMSMKSSRLGCSGVRSGWIM
Sbjct: 61 TSGPRVPLLKRESTTGLKLGGSGKFEGMGGCGRRELVKKSEMSMKSSRLGCSGVRSGWIM 120
Query: 121 SALPTRQLQGRRAGLSHGEESVRDVGQKAIEVQEVPPTRLLLWVPQQHGDHTGEELFAPL 180
SALPTRQLQGRRAGLSHGEESVRDVGQKAIEVQE+PPTRLLLWVPQQHGDHTGEELFAPL
Sbjct: 121 SALPTRQLQGRRAGLSHGEESVRDVGQKAIEVQELPPTRLLLWVPQQHGDHTGEELFAPL 180
Query: 181 LRRRPPAFRLGRQSRQQPLE-------SSHC----------PDLPYHPSPGSSG-QQDRG 222
LRRRPPAFRLGRQS+ Q + S C P L + PS G+ G ++ RG
Sbjct: 181 LRRRPPAFRLGRQSQSQTFKIPFQTPTSGPCVPWGDLFGTGPGLGFAPSSGTRGVERQRG 240
Query: 223 LPPAAPVFPGETCLSVYCRTKATLKPVDQLGPGSNNVQWP 262
A V LS R + L V + G G + P
Sbjct: 241 AACALSV-----ALSGGPRQRRALSLVWRRGQGRQGPEPP 275
Score = 283 bits (723), Expect = 4e-76
Identities = 145/187 (77%), Positives = 150/187 (80%), Gaps = 4/187 (2%)
Query: 368 WDAGRGAAAGRGLCALGGTKRGSQAATGAQPSVATWRAVLPRTPPPSP---PGSQGRQGP 424
W G G G GT RG + GA +++ + PR QGRQGP
Sbjct: 214 WGDLFGTGPGLGFAPSSGT-RGVERQRGAACALSVALSGGPRQRRALSLVWRRGQGRQGP 272
Query: 425 EPPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPGQRVAVRRRHHEVTAVDDLRA 484
EPPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPGQRVAVRRRHHEVTAVDDLRA
Sbjct: 273 EPPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPGQRVAVRRRHHEVTAVDDLRA 332
Query: 485 EQAARAAPETRVLRVCVRVRVWAGRDPRDLQARGQTCQRAGHGCRRRNRLVPAPRSAGNS 544
EQAARAAPETRVLRVCVRVRVWAGRDPRDLQARGQTCQRAGHGCRRRNRLVPAPRSAGNS
Sbjct: 333 EQAARAAPETRVLRVCVRVRVWAGRDPRDLQARGQTCQRAGHGCRRRNRLVPAPRSAGNS 392
Query: 545 SWPAGPH 551
SWPAGPH
Sbjct: 393 SWPAGPH 399
>gi|239743236 PREDICTED: hypothetical protein XP_002342810 [Homo
sapiens]
Length = 140
Score = 259 bits (661), Expect = 6e-69
Identities = 124/125 (99%), Positives = 125/125 (100%)
Query: 1 MQQRWGYRRGWEPGLGVFRKEEIRTQEGAGVQGARAAVPNLLTCRRLCPERWVMAEEAGG 60
MQQRWGYRRGWEPGLGVFRKEEIRTQEGAGVQGARAAVP+LLTCRRLCPERWVMAEEAGG
Sbjct: 1 MQQRWGYRRGWEPGLGVFRKEEIRTQEGAGVQGARAAVPSLLTCRRLCPERWVMAEEAGG 60
Query: 61 TSGPRVPLLKRESTTGLKLGGSGKFEGMGGCGRRELVKKSEMSMKSSRLGCSGVRSGWIM 120
TSGPRVPLLKRESTTGLKLGGSGKFEGMGGCGRRELVKKSEMSMKSSRLGCSGVRSGWIM
Sbjct: 61 TSGPRVPLLKRESTTGLKLGGSGKFEGMGGCGRRELVKKSEMSMKSSRLGCSGVRSGWIM 120
Query: 121 SALPT 125
SALPT
Sbjct: 121 SALPT 125
>gi|239508911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 259 bits (661), Expect = 6e-69
Identities = 124/125 (99%), Positives = 125/125 (100%)
Query: 1 MQQRWGYRRGWEPGLGVFRKEEIRTQEGAGVQGARAAVPNLLTCRRLCPERWVMAEEAGG 60
MQQRWGYRRGWEPGLGVFRKEEIRTQEGAGVQGARAAVP+LLTCRRLCPERWVMAEEAGG
Sbjct: 1 MQQRWGYRRGWEPGLGVFRKEEIRTQEGAGVQGARAAVPSLLTCRRLCPERWVMAEEAGG 60
Query: 61 TSGPRVPLLKRESTTGLKLGGSGKFEGMGGCGRRELVKKSEMSMKSSRLGCSGVRSGWIM 120
TSGPRVPLLKRESTTGLKLGGSGKFEGMGGCGRRELVKKSEMSMKSSRLGCSGVRSGWIM
Sbjct: 61 TSGPRVPLLKRESTTGLKLGGSGKFEGMGGCGRRELVKKSEMSMKSSRLGCSGVRSGWIM 120
Query: 121 SALPT 125
SALPT
Sbjct: 121 SALPT 125
>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
sapiens]
Length = 229
Score = 46.2 bits (108), Expect = 8e-05
Identities = 51/172 (29%), Positives = 60/172 (34%), Gaps = 22/172 (12%)
Query: 384 GGTKRGSQAATGAQPSVATWRAVLPRT----------PPPSPPGSQGRQGPEPPSPVGQA 433
GGT R A+ GAQ S A L RT PPPSP +GP PP P +
Sbjct: 12 GGTPRPLPASAGAQGSQARSGLRLCRTTQGRPAGGASPPPSPRSRP--EGPGPPRPATPS 69
Query: 434 QALEEACECGVDTARPEVGGPHGPLLVAPPGQRVAVRRRHHEVTAVDDLRAEQAARAAPE 493
+ GV + PL +A P R R H R A P
Sbjct: 70 ARRPQGLSAGVSAGPAQ---RSRPLQLAGPRDRAPARALHARTRMGRAARGPPAPSRGPL 126
Query: 494 TRVLRVCVRVRVWAGRDPRDLQARGQTCQRAGHGCRRRNRLVPAPRSAGNSS 545
RV C R+W RG T RR +L P R AG +S
Sbjct: 127 KRVTWTCAVRRLWTS---WAWALRGGT----DPVLDRRQQLTPRHRPAGETS 171
>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
sapiens]
Length = 229
Score = 46.2 bits (108), Expect = 8e-05
Identities = 51/172 (29%), Positives = 60/172 (34%), Gaps = 22/172 (12%)
Query: 384 GGTKRGSQAATGAQPSVATWRAVLPRT----------PPPSPPGSQGRQGPEPPSPVGQA 433
GGT R A+ GAQ S A L RT PPPSP +GP PP P +
Sbjct: 12 GGTPRPLPASAGAQGSQARSGLRLCRTTQGRPAGGASPPPSPRSRP--EGPGPPRPATPS 69
Query: 434 QALEEACECGVDTARPEVGGPHGPLLVAPPGQRVAVRRRHHEVTAVDDLRAEQAARAAPE 493
+ GV + PL +A P R R H R A P
Sbjct: 70 ARRPQGLSAGVSAGPAQ---RSRPLQLAGPRDRAPARALHARTRMGRAARGPPAPSRGPL 126
Query: 494 TRVLRVCVRVRVWAGRDPRDLQARGQTCQRAGHGCRRRNRLVPAPRSAGNSS 545
RV C R+W RG T RR +L P R AG +S
Sbjct: 127 KRVTWTCAVRRLWTS---WAWALRGGT----DPVLDRRQQLTPRHRPAGETS 171
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 40.8 bits (94), Expect = 0.003
Identities = 70/274 (25%), Positives = 91/274 (33%), Gaps = 50/274 (18%)
Query: 214 GSSGQQDRGLPPAAPVFPGETCLSVYCRTKATLKPVDQLGPGSNNVQWPHRGPLELGVFE 273
G G++ + PP P PG T L + P DQ PGS P G+
Sbjct: 1015 GEPGEKGQPGPPGPPGPPGSTGLRGFIGFPGL--PGDQGEPGSPGP------PGFSGIDG 1066
Query: 274 DENTVPVQASGLFHYQMGKSRSSPGRQVPICSQRFSEGEEAPRRKRNICTEKRSRPADPP 333
+ H+ + PG P C F E RP P
Sbjct: 1067 ARGPKGNKGDPASHFGPPGPKGEPGS--PGCPGHFGASGEQGLPGIQGPRGSPGRPGPPG 1124
Query: 334 FSPTGFRLIIYTGPSTPGNFA-------PGHWARPRVRALLWDAG-------RGAAAGRG 379
S P PG+ PG P R L D G +G + G
Sbjct: 1125 SSGP---------PGCPGDHGMPGLRGQPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPG 1175
Query: 380 LCALGGTK--RGSQAATGAQ----------PSVATWRAVLPRTPPPSPPGSQGRQGPEPP 427
L L G K +G++ A+G P + R P +P SPPG +G++GP P
Sbjct: 1176 LNGLHGLKGQKGTKGASGLHDVGPPGPVGIPGLKGERGD-PGSPGISPPGPRGKKGPPGP 1234
Query: 428 ----SPVGQAQALEEACECGVDTARPEVGGPHGP 457
P G A A A + D P GP GP
Sbjct: 1235 PGSSGPPGPAGATGRAPKDIPDPGPPGDQGPPGP 1268
Score = 37.0 bits (84), Expect = 0.047
Identities = 33/87 (37%), Positives = 39/87 (44%), Gaps = 19/87 (21%)
Query: 389 GSQAATGAQPSVATWRAVLPRT-PPPSPPGSQGRQGPE-------PPSPVGQAQALE-EA 439
GS G P+ AT RA P+ P P PPG QG GP+ PP G L E
Sbjct: 1236 GSSGPPG--PAGATGRA--PKDIPDPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEP 1291
Query: 440 CECGVDTARPEVGGPHGPLLVAPPGQR 466
+CG+ P GP GP PPG +
Sbjct: 1292 GDCGL----PGPPGPPGP--PGPPGYK 1312
Score = 30.4 bits (67), Expect = 4.4
Identities = 44/147 (29%), Positives = 52/147 (35%), Gaps = 17/147 (11%)
Query: 325 KRSRPADPPFSPTGFRLIIYTGPSTPGNFAPGHWARPRVRALLWDAGRGAAAGRGLCALG 384
+R P P SP G R P PG+ P A RA G +G
Sbjct: 1211 ERGDPGSPGISPPGPRGK-KGPPGPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPPGPD 1269
Query: 385 GTKRGSQAATGAQPSVATWRAVLPRTPPPSPPGSQGRQGPEPPSPVGQAQALEEACECGV 444
G RG+ G SV R P PPG P PP P G C+ G
Sbjct: 1270 GP-RGAPGPPGLPGSVDLLRGEPGDCGLPGPPGP-----PGPPGPPGYKGF--PGCD-GK 1320
Query: 445 DTARPEVG-----GPHGPLLVAPPGQR 466
D + VG GPHG PPG++
Sbjct: 1321 DGQKGPVGFPGPQGPHG--FPGPPGEK 1345
Score = 29.6 bits (65), Expect = 7.5
Identities = 36/118 (30%), Positives = 42/118 (35%), Gaps = 19/118 (16%)
Query: 347 PSTPGNFA-PGHWARPRVRALLWDAGRGAAAGRGLCALGGTKR--GSQAATGAQPSVATW 403
P PG PG + P L + G GL L G K G++ G + T
Sbjct: 304 PGFPGPRGDPGSYGSPGFPGLKGELG--LVGDPGLFGLIGPKGDPGNRGHPGPPGVLVT- 360
Query: 404 RAVLPRTPPPSPPGSQGRQGPE----PPSPVGQAQALEEACECGVDTARPEVGGPHGP 457
LP PP PG GR G PP P G EAC + GP GP
Sbjct: 361 -PPLPLKGPPGDPGFPGRYGETGDVGPPGPPGLLGRPGEACAGMI--------GPPGP 409
Score = 29.3 bits (64), Expect = 9.8
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 412 PPSPPGSQGRQGPE------PPSPVGQAQALEEACECGV----DTARPEVGGPHGPLLVA 461
PP PPG GR G PP P G E G+ D+A + G P P L
Sbjct: 386 PPGPPGLLGRPGEACAGMIGPPGPQGFPGLPGLPGEAGIPGRPDSAPGKPGKPGSPGLPG 445
Query: 462 PPG 464
PG
Sbjct: 446 APG 448
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 40.8 bits (94), Expect = 0.003
Identities = 79/347 (22%), Positives = 109/347 (31%), Gaps = 65/347 (18%)
Query: 169 GDHTGEELFAPLLRRRPPAFRLGRQSRQQPLESSHCPDLPYHPSPGSSGQQDRGLPPAAP 228
G +G + L+R PP R Q+ L PD P P +Q LP
Sbjct: 482 GQLSGRSVSLRKLKRPPPPPRRTHSLHQRGLA---VPDGPLGLPPKPERKQQPQLPRPPT 538
Query: 229 VFPGETCLSVYCRTKATLKPVDQLGPGSNNVQWPHRGPLEL-----GVFEDENTVPVQAS 283
E + C V L PG + + P R P G T +
Sbjct: 539 TGGSEGAGAAPCPPNPANSWVPGLSPGGS--RRPPRSPERTLSPSSGYSSQSGTPTLPPK 596
Query: 284 GLFHYQMGKSRSSPGRQVPICSQRFSEGEEAPRRKRNICTEKRS-----RPADPPFSPTG 338
GL ++ P + + S R S G ++C+ R +P G
Sbjct: 597 GLAGPPASPGKAQPPKPERVTSLR-SPGASVSSSLTSLCSSSSDPAPSDRSGPQILTPLG 655
Query: 339 FRLIIYTGPSTPGNFAPGHWARPRVRALLWDAGRGAAAGRGLCALGGTKRGSQAATGAQP 398
R +I P P F+P ++PR A A + G + A+ + P
Sbjct: 656 DRFVIPPHPKVPAPFSPPP-SKPR------SPNPAAPALAAPAVVPGPVSTTDASPQSPP 708
Query: 399 SVATWRAVLP--------RTPPPSPPGS----------------------------QGRQ 422
+ T L ++PPPSPP S Q
Sbjct: 709 TPQTTLTPLQESPVISKDQSPPPSPPPSYHPPPPPTKKPEVVVEAPSASETAEEPLQDPN 768
Query: 423 GPEPPSPVGQAQALEEAC-----ECGVDTARPEVGGPHG-PLLVAPP 463
P PP P + Q L A E A PE GP G P LV+ P
Sbjct: 769 WPPPPPPAPEEQDLSMADFPPPEEAFFSVASPEPAGPSGSPELVSSP 815
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 40.4 bits (93), Expect = 0.004
Identities = 47/163 (28%), Positives = 61/163 (37%), Gaps = 26/163 (15%)
Query: 318 KRNICTEKRSRPADPPFSPTGFRLIIYTGPSTPGNFAPGHWARPRVRALLWDAGRGAAAG 377
+R IC ++ P DP P G + P G P + + G G G
Sbjct: 236 ERKICECEKGDPGDP--GPPG----THGNPGIKGERGPKGNPGNAQKGEAGERGPGGIPG 289
Query: 378 -------RGLCALGGTK--RGSQAATGAQPSVATWRAVLPRTPPPSPPGSQGRQG----P 424
RG C G K +GS G + R + T PP PG +G QG P
Sbjct: 290 YKGDKGERGECGKPGIKGDKGSPGPYGPKGP----RGIQGITGPPGDPGPKGFQGNKGEP 345
Query: 425 EPPSPVGQAQALEEACECGVDTARPEVG--GPHGPLLVAPPGQ 465
PP P G A + G+ R + G G GP+ V PGQ
Sbjct: 346 GPPGPYGSPGA-PGIGQQGIKGERGQEGRPGAPGPIGVGEPGQ 387
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 40.4 bits (93), Expect = 0.004
Identities = 25/66 (37%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 409 RTPPPSPPGSQGRQGPEPPSPVGQAQALE----------EACECGVDTARPEVGGPHGPL 458
R PP PPG G GP P SP G +L+ VDT V GP GP
Sbjct: 249 RPGPPGPPGPAGNPGPSPNSPQGALYSLQPPTDKDNGDSRLASAIVDTVLAGVPGPRGP- 307
Query: 459 LVAPPG 464
PPG
Sbjct: 308 -PGPPG 312
Score = 29.6 bits (65), Expect = 7.5
Identities = 19/67 (28%), Positives = 25/67 (37%)
Query: 412 PPSPPGSQGRQGPEPPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPGQRVAVRR 471
PP PPG G +GP P +Q L + P V G G G+ V R
Sbjct: 307 PPGPPGPPGPRGPPGPPGTPGSQGLAGERGTVGPSGEPGVKGEEGEKAATAEGEGVQQLR 366
Query: 472 RHHEVTA 478
++ A
Sbjct: 367 EALKILA 373
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 40.0 bits (92), Expect = 0.006
Identities = 45/132 (34%), Positives = 50/132 (37%), Gaps = 21/132 (15%)
Query: 344 YTGPSTPGNFAPGHWARPRVRALLWDAG-RGAAA--GRGLCALGGTKRGSQAATGAQPSV 400
+ GP+ P N PG R AG RGAA GR G RG + G S
Sbjct: 490 FRGPAGP-NGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSD 548
Query: 401 ATWRAVLPRTPPPSPPGSQGRQG----PEPPSPVGQAQALEEACECGVDTA---RPEVGG 453
P PPGSQG G P P P GQ + G D A E GG
Sbjct: 549 GK----------PGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGG 598
Query: 454 PHGPLLVAPPGQ 465
P GP PPG+
Sbjct: 599 PGGPGPQGPPGK 610
Score = 31.6 bits (70), Expect = 2.0
Identities = 35/124 (28%), Positives = 44/124 (35%), Gaps = 15/124 (12%)
Query: 347 PSTPGNFAPGHWARPRVRALLWDAGR-GAAAGRGLCALGGTKRGSQAATGAQPSVATWRA 405
P T G PG +P DAG GA G+G G +RG GA
Sbjct: 644 PGTGG--PPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPG-ERGPPGLAGAP-------G 693
Query: 406 VLPRTPPPSPPGSQGRQGPEPPSPVGQAQALE----EACECGVDTARPEVGGPHGPLLVA 461
+ PP P G +G GP P L+ E G + + G P GP
Sbjct: 694 LRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADG 753
Query: 462 PPGQ 465
PG+
Sbjct: 754 VPGK 757
Score = 30.8 bits (68), Expect = 3.4
Identities = 41/145 (28%), Positives = 45/145 (31%), Gaps = 30/145 (20%)
Query: 345 TGPSTPGNF--APGHWARPR---VRALLWDAGRGAAAGRGLCALGGTKRGSQAATGAQPS 399
TGP P F APG P R + G G G + G GS A P
Sbjct: 803 TGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPG-----VAGPPGGSGPAGPPGPQ 857
Query: 400 VATWRAVLPRTPP----------PSPPGSQGRQGPEPPS-------PVGQAQALEEACEC 442
P P P PPGS G GP PS P G A
Sbjct: 858 GVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSP 917
Query: 443 GVDTARPEVGGP---HGPLLVAPPG 464
GV + + G P P PPG
Sbjct: 918 GVSGPKGDAGQPGEKGSPGAQGPPG 942
Score = 30.0 bits (66), Expect = 5.7
Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 11/117 (9%)
Query: 347 PSTPGNFAPGHWARPRVRALLWDAGR----GAAAGRGLCALGGTKRGSQAATGAQPSVAT 402
P +PG PG +P ++GR G + RG + G G + GA P
Sbjct: 539 PGSPGG--PGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFP-GPKGNDGA-PGKNG 594
Query: 403 WRAVLPRTPPPSPPGSQGRQGPE-PPSPVGQAQALEEACECGVDTAR--PEVGGPHG 456
R P PPG G GP+ PP P G + G + P GGP G
Sbjct: 595 ERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPG 651
Score = 29.6 bits (65), Expect = 7.5
Identities = 34/123 (27%), Positives = 46/123 (37%), Gaps = 17/123 (13%)
Query: 347 PSTPGNFAPGHWARPRVRALLWDAGRGAAAGRGLCALGGTKRGSQAATGAQPSVATWRAV 406
P+ P N++P + + +D G A G GL G G G P +
Sbjct: 145 PTGPQNYSPQYDS--------YDVKSGVAVG-GLAGYPGPA-GPPGPPG--PPGTSGHPG 192
Query: 407 LPRTP----PPSPPGSQGRQGPE-PPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVA 461
P +P PP PG G GP PP +G + + E G E G P P +
Sbjct: 193 SPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKG 252
Query: 462 PPG 464
P G
Sbjct: 253 PAG 255
Score = 29.6 bits (65), Expect = 7.5
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 413 PSPPGSQGRQGPEPPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPGQRVAV 469
P P GS+G P P P G E G+ R G P P P GQ+ A+
Sbjct: 1076 PGPAGSRG--APGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAI 1130
Score = 29.6 bits (65), Expect = 7.5
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 20/101 (19%)
Query: 372 RGAAAGRGLCALGGTKR--GSQAATGAQPSVATWRAVLPRTP-----PPSPPGSQGRQGP 424
RGAA +G G GS G Q ++ + PR P PP G+ G GP
Sbjct: 1100 RGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGP 1159
Query: 425 -EPPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPG 464
PP P G R G P P PPG
Sbjct: 1160 IGPPGPRGNR------------GERGSEGSPGHPGQPGPPG 1188
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 40.0 bits (92), Expect = 0.006
Identities = 34/106 (32%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 369 DAGRGAAAG-RGLCALGGT--KRGSQAATGAQPSVATWR--AVLPRTPPPSPPGSQGRQG 423
D G+ G +G L GT + G + GA + T ++L PP PPG+ G G
Sbjct: 774 DPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPG 833
Query: 424 PE-PPSPVGQA--QALEEACECGVDTARPEVGGPHGPLLVAPPGQR 466
P P P G A +E P GP GP + PPG R
Sbjct: 834 PPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPR 879
Score = 32.7 bits (73), Expect = 0.89
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 412 PPSPPGSQGRQGPEPPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPGQRVAVRR 471
PP PPG QG +G + V A + G ++ V GP GP PPG ++
Sbjct: 952 PPGPPGPQGPKGDKGDPGVPGALGIPSGPSEGGSSSTMYVSGPPGP--PGPPGPPGSISS 1009
Query: 472 RHHEV 476
E+
Sbjct: 1010 SGQEI 1014
Score = 32.0 bits (71), Expect = 1.5
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 412 PPSPPGSQGRQGPEPPSPVGQAQALEEACECGVDTARPEVGGPHGP 457
PP PPG +G QGP P Q L G + + GP GP
Sbjct: 910 PPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGP 955
Score = 31.2 bits (69), Expect = 2.6
Identities = 43/172 (25%), Positives = 55/172 (31%), Gaps = 45/172 (26%)
Query: 310 EGEEAPRRKRNICTEKRSRPADPPFSPTGFRLIIYTGPSTPGNFAPGHWARPRVRALLWD 369
+G + PR ++ + R P G + TGP P PG RP ++
Sbjct: 748 DGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGL--TGPQGPQGL-PGTPGRPGIK----- 799
Query: 370 AGRGAAAGRGLCALGG---TKRGSQAATGAQPSVATWRAVLPRTP--------------P 412
G A G+ + + G T G GA A P P P
Sbjct: 800 -GEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGP 858
Query: 413 PSPPGSQGRQGPEPPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPG 464
P PPG +G GP P P G GP G L PPG
Sbjct: 859 PGPPGPRGPPGPSIPGPPGPR-------------------GPPGEGLPGPPG 891
Score = 29.3 bits (64), Expect = 9.8
Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 412 PPSPPGSQGRQGPEPPSPVGQAQALEEACECGVDTARPEVGGPHGPL-LVAPPGQR 466
PP P G G P PP P G + E G P GP GP PPG R
Sbjct: 875 PPGPRGPPGEGLPGPPGPPGSFLSNSETFLSG----PPGPPGPPGPKGDQGPPGPR 926
>gi|169204521 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 39.7 bits (91), Expect = 0.007
Identities = 45/128 (35%), Positives = 50/128 (39%), Gaps = 22/128 (17%)
Query: 419 QGRQGPEPPSPVGQ----AQALEEACECGVDTARPEVGGPHGPLLVAP---PGQRVAVRR 471
+G GP P+ G A A EE + G A P PHGP PG R RR
Sbjct: 277 RGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRR 336
Query: 472 RHHEVTAVDDLRAE-QAARAAPETRVLRVCVRVRVWAGRDPRDLQARGQTCQRAGHGCRR 530
R HE A R E AA AAP R AGR AR + + HG R
Sbjct: 337 RSHEGRARGRHRVEADAADAAPTAAARR--------AGR------ARPRGRRHREHGTRS 382
Query: 531 RNRLVPAP 538
R V AP
Sbjct: 383 DARAVAAP 390
>gi|169205149 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 39.7 bits (91), Expect = 0.007
Identities = 45/128 (35%), Positives = 50/128 (39%), Gaps = 22/128 (17%)
Query: 419 QGRQGPEPPSPVGQ----AQALEEACECGVDTARPEVGGPHGPLLVAP---PGQRVAVRR 471
+G GP P+ G A A EE + G A P PHGP PG R RR
Sbjct: 277 RGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRR 336
Query: 472 RHHEVTAVDDLRAE-QAARAAPETRVLRVCVRVRVWAGRDPRDLQARGQTCQRAGHGCRR 530
R HE A R E AA AAP R AGR AR + + HG R
Sbjct: 337 RSHEGRARGRHRVEADAADAAPTAAARR--------AGR------ARPRGRRHREHGTRS 382
Query: 531 RNRLVPAP 538
R V AP
Sbjct: 383 DARAVAAP 390
>gi|169204400 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 39.7 bits (91), Expect = 0.007
Identities = 45/128 (35%), Positives = 50/128 (39%), Gaps = 22/128 (17%)
Query: 419 QGRQGPEPPSPVGQ----AQALEEACECGVDTARPEVGGPHGPLLVAP---PGQRVAVRR 471
+G GP P+ G A A EE + G A P PHGP PG R RR
Sbjct: 277 RGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRR 336
Query: 472 RHHEVTAVDDLRAE-QAARAAPETRVLRVCVRVRVWAGRDPRDLQARGQTCQRAGHGCRR 530
R HE A R E AA AAP R AGR AR + + HG R
Sbjct: 337 RSHEGRARGRHRVEADAADAAPTAAARR--------AGR------ARPRGRRHREHGTRS 382
Query: 531 RNRLVPAP 538
R V AP
Sbjct: 383 DARAVAAP 390
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 38.9 bits (89), Expect = 0.012
Identities = 39/128 (30%), Positives = 49/128 (38%), Gaps = 9/128 (7%)
Query: 372 RGAAAGRGLCALGGTKRGSQAATGAQPSVATWRAVLPRTPPPSPPGSQGRQG-PEPPSPV 430
RG RG L G G G Q S PR PP P G G++G P P P+
Sbjct: 1139 RGQKGHRGFTGLQGLP-GPPGPNGEQGSAGIPGPFGPRGPP-GPVGPSGKEGNPGPLGPI 1196
Query: 431 GQAQALEEACECGVDTARPEVGGPHGPLLVAPPGQRVAVR---RRHHEVTAVDDLRAEQA 487
G E G + P GP GP PPG A H++ + D L
Sbjct: 1197 GPPGVRGSVGEAGPE-GPPGEPGPPGP--PGPPGHLTAALGDIMGHYDESMPDPLPEFTE 1253
Query: 488 ARAAPETR 495
+AAP+ +
Sbjct: 1254 DQAAPDDK 1261
Score = 30.4 bits (67), Expect = 4.4
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 377 GRGLCALGGTKRGSQAATGAQPSVATWRAVLPRTPPPSPPGSQGRQGPEPPSPVGQAQAL 436
G G G ++G + G P V R R P PPGSQG +G P +
Sbjct: 101 GGGNTNFGRGRKGQKGEPGLVPVVTGIRG---RPGPAGPPGSQGPRGERGPKGRPGPRGP 157
Query: 437 EEACECGVDTARPEVGGPHGPLLVAPPG 464
+ G+D E G P P PPG
Sbjct: 158 Q-----GID---GEPGVPGQPGAPGPPG 177
Score = 29.3 bits (64), Expect = 9.8
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Query: 412 PPSPPGSQGRQGPE-------PPSPVGQAQA 435
P PPG +G++GP PP PVG+ A
Sbjct: 493 PIGPPGEEGKRGPRGDPGTVGPPGPVGERGA 523
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 38.9 bits (89), Expect = 0.012
Identities = 43/140 (30%), Positives = 51/140 (36%), Gaps = 34/140 (24%)
Query: 329 PADPPFSPTGFRLIIYTGPSTPGNFAPGHWARPRVRALLWDAGRGAAAG-----RGLCAL 383
PA PP P ++GP G +AR A+ A GA A R L +
Sbjct: 413 PAVPPAPPAQASFGAFSGP---GGAPDSAFARRSPDAV---ASPGAPAPAPAPFRDLASA 466
Query: 384 GGTKRGSQAATGAQPSVATWRAVLPRTPPPSPPGSQGRQGPEPPSPVGQAQALEEACECG 443
T+ G A + P P PP R GP PPSP EE CG
Sbjct: 467 AATEGGGGDCADAGTA----------GPAPPPPAPSPRPGPRPPSPA------EEPATCG 510
Query: 444 VDTARPEVGGPHGPLLVAPP 463
V PE G GP +PP
Sbjct: 511 V----PEPGAAAGP---SPP 523
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 38.5 bits (88), Expect = 0.016
Identities = 48/169 (28%), Positives = 56/169 (33%), Gaps = 36/169 (21%)
Query: 311 GEEAPRRKRNICTEKRSRPADPPFSPTGFRLIIYTGPSTPGNFAPGHWARPRVRALLWDA 370
G PR +R E+ S A P G P TPG P + P A
Sbjct: 693 GLVGPRGERGFPGERGSPGAQGLQGPRGL-------PGTPGTDGPKGASGP--------A 737
Query: 371 GRGAAAG----------RGLCALGGTK--RGSQAATGAQ--PSVATWRAVLPRTPPPSPP 416
G A G RG + G K RG G + P R + PP P
Sbjct: 738 GPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPA 797
Query: 417 GSQGRQGP-EPPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPG 464
G+ G +G PP P G A A G R E G P PPG
Sbjct: 798 GANGEKGEVGPPGPAGSAGAR------GAPGERGETGPPGPAGFAGPPG 840
Score = 37.4 bits (85), Expect = 0.036
Identities = 43/149 (28%), Positives = 54/149 (36%), Gaps = 32/149 (21%)
Query: 345 TGPSTPGNFA--PGHWARPRVRALLWDAGR-------------GAAAGRGLCALGGTK-- 387
TGP P FA PG +P + +AG+ GA +G + G K
Sbjct: 827 TGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGA 886
Query: 388 RGSQAATGAQPSVATWRAVLP-----RTPPPSPPGSQGRQGPE-------PPSPVGQAQA 435
RG+Q GA V P PP PPG G+ GP+ PP G+
Sbjct: 887 RGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGL 946
Query: 436 LEEACECGVDTARPEVGGPHGPLLVAPPG 464
A G + P GP G PPG
Sbjct: 947 QGPAGPPG-EKGEPGDDGPSG--AEGPPG 972
Score = 34.7 bits (78), Expect = 0.23
Identities = 47/149 (31%), Positives = 52/149 (34%), Gaps = 51/149 (34%)
Query: 347 PSTPGNFAPGHWARPRVRALLWDAGRGAAAGRGLCALGGTKRGSQAATGAQPSVATWRAV 406
P TPG+ P GA+ G + G K GS A G A
Sbjct: 395 PGTPGSPGPA----------------GASGNPGTDGIPGAK-GSAGAPGI--------AG 429
Query: 407 LPRTPPP-SPPGSQGRQGP--------EP--------------PSPVGQAQALEEACECG 443
P P P PPG QG GP EP P P G A A E G
Sbjct: 430 APGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEG 489
Query: 444 VDTARPEVGGPHGPLLVAPPGQRVAVRRR 472
AR E GG GP + PPG+R A R
Sbjct: 490 KRGARGEPGGV-GP--IGPPGERGAPGNR 515
Score = 30.0 bits (66), Expect = 5.7
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 22/62 (35%)
Query: 412 PPSPPGSQGRQGPE-------PPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPG 464
PP P G QG GP PP PVG + G D A G GP + PPG
Sbjct: 1144 PPGPSGDQGASGPAGPSGPRGPPGPVGPS---------GKDGA----NGIPGP--IGPPG 1188
Query: 465 QR 466
R
Sbjct: 1189 PR 1190
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 38.5 bits (88), Expect = 0.016
Identities = 48/169 (28%), Positives = 56/169 (33%), Gaps = 36/169 (21%)
Query: 311 GEEAPRRKRNICTEKRSRPADPPFSPTGFRLIIYTGPSTPGNFAPGHWARPRVRALLWDA 370
G PR +R E+ S A P G P TPG P + P A
Sbjct: 624 GLVGPRGERGFPGERGSPGAQGLQGPRGL-------PGTPGTDGPKGASGP--------A 668
Query: 371 GRGAAAG----------RGLCALGGTK--RGSQAATGAQ--PSVATWRAVLPRTPPPSPP 416
G A G RG + G K RG G + P R + PP P
Sbjct: 669 GPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPA 728
Query: 417 GSQGRQGP-EPPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPG 464
G+ G +G PP P G A A G R E G P PPG
Sbjct: 729 GANGEKGEVGPPGPAGSAGAR------GAPGERGETGPPGPAGFAGPPG 771
Score = 37.4 bits (85), Expect = 0.036
Identities = 43/149 (28%), Positives = 54/149 (36%), Gaps = 32/149 (21%)
Query: 345 TGPSTPGNFA--PGHWARPRVRALLWDAGR-------------GAAAGRGLCALGGTK-- 387
TGP P FA PG +P + +AG+ GA +G + G K
Sbjct: 758 TGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGA 817
Query: 388 RGSQAATGAQPSVATWRAVLP-----RTPPPSPPGSQGRQGPE-------PPSPVGQAQA 435
RG+Q GA V P PP PPG G+ GP+ PP G+
Sbjct: 818 RGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGL 877
Query: 436 LEEACECGVDTARPEVGGPHGPLLVAPPG 464
A G + P GP G PPG
Sbjct: 878 QGPAGPPG-EKGEPGDDGPSG--AEGPPG 903
Score = 34.7 bits (78), Expect = 0.23
Identities = 47/149 (31%), Positives = 52/149 (34%), Gaps = 51/149 (34%)
Query: 347 PSTPGNFAPGHWARPRVRALLWDAGRGAAAGRGLCALGGTKRGSQAATGAQPSVATWRAV 406
P TPG+ P GA+ G + G K GS A G A
Sbjct: 326 PGTPGSPGPA----------------GASGNPGTDGIPGAK-GSAGAPGI--------AG 360
Query: 407 LPRTPPP-SPPGSQGRQGP--------EP--------------PSPVGQAQALEEACECG 443
P P P PPG QG GP EP P P G A A E G
Sbjct: 361 APGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEG 420
Query: 444 VDTARPEVGGPHGPLLVAPPGQRVAVRRR 472
AR E GG GP + PPG+R A R
Sbjct: 421 KRGARGEPGGV-GP--IGPPGERGAPGNR 446
Score = 30.0 bits (66), Expect = 5.7
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 22/62 (35%)
Query: 412 PPSPPGSQGRQGPE-------PPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPG 464
PP P G QG GP PP PVG + G D A G GP + PPG
Sbjct: 1075 PPGPSGDQGASGPAGPSGPRGPPGPVGPS---------GKDGA----NGIPGP--IGPPG 1119
Query: 465 QR 466
R
Sbjct: 1120 PR 1121
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 38.1 bits (87), Expect = 0.021
Identities = 71/309 (22%), Positives = 95/309 (30%), Gaps = 39/309 (12%)
Query: 178 APLLRRRPPAFRLGRQSRQQPLESSHCPDLPYHP----SPGSSGQQDRGLP-PAAPVFPG 232
AP PP+ QSR + S PYH PG G P P + G
Sbjct: 348 APANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGPGGPGGGPHSFPHPLPSLTGG 407
Query: 233 ETCLSVYCRTKATLKPVDQLGPGSNNVQWPH----RGPLELGVFEDENTVPVQASGLFHY 288
+ P Q P N Q PH GP + + V SG++
Sbjct: 408 HGGHPMQHNPNGPPPPWMQPPPPPMN-QGPHPPGHHGPPPMDQYLGSTPV---GSGVYRL 463
Query: 289 QMGKSRSSP---GRQVPICSQRFSEGEEAPRRKRNICTEKRSRPADPP--------FSPT 337
GK P G P + P +++ +P PP +P
Sbjct: 464 HQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPL 523
Query: 338 GFRLIIYTGPSTPGNFAPGHWARPRVRALLWDAGRGAAAGRGLCALGGTKRGSQAATGAQ 397
++ T ++ G + W + + AAA G + G G Q
Sbjct: 524 PWQQNTTTTTTSAGTGSIPPWQQQQA---------AAAASPGAPQMQGNPTMVPLPPGVQ 574
Query: 398 PSVATWRAVLPRTPPPSPPGSQGRQGPEPPSPVGQAQALEEACECGVDTA-RPEVGGPHG 456
P + P PPP PPGS G PP P G+ A P G P
Sbjct: 575 PPLPPGA---PPPPPPPPPGSAGMMYAPPPPPPPPMDPSNFVTMMGMGVAGMPPFGMPPA 631
Query: 457 PLLVAPPGQ 465
P PP Q
Sbjct: 632 P--PPPPPQ 638
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 37.7 bits (86), Expect = 0.028
Identities = 36/119 (30%), Positives = 44/119 (36%), Gaps = 13/119 (10%)
Query: 351 GNFAPGHWARPRVRALLWDAGRGAAAGRGLCALGGTKRGSQAATGAQPSVATWRAVLPRT 410
G APG RP R L G +G G KRG G QP + R
Sbjct: 192 GYGAPG---RPGERGLPGPQGPTGPSGPP----GVGKRGENGVPG-QPGIKGDRGFPGEM 243
Query: 411 PPPSPPGSQGRQGPEPPSPVGQAQALEEACECGVDTAR-----PEVGGPHGPLLVAPPG 464
P PPG QG G P +G+ A + G+ + P + GP GP PG
Sbjct: 244 GPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPG 302
Score = 37.0 bits (84), Expect = 0.047
Identities = 35/118 (29%), Positives = 45/118 (38%), Gaps = 13/118 (11%)
Query: 355 PGHWARPRVRALLWDAG-RGAAAGRGLCALGGTKRGSQAATGAQPSVATWRAVLPRTPPP 413
PGH R G RG G+ G+K + P+ + + T PP
Sbjct: 433 PGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPP 492
Query: 414 SPPGSQGRQG-------PEPPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPG 464
PPG +G G P PP P GQA E + G RP + G PL+ A G
Sbjct: 493 GPPGPRGHSGEPGLPGPPGPPGPPGQAVMPEGFIKAG---QRPSLSGT--PLVSANQG 545
Score = 30.4 bits (67), Expect = 4.4
Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 347 PSTPGNFAPGHWARPRVRALLWDAGRGAAAGRGLCALGGTKRGSQAATGAQPSVATWRAV 406
P PG +PG P L G A G+ L G K G + G + V
Sbjct: 80 PGKPGYGSPGLQGEP---GLPGPPGPSAVGKPGVPGLPG-KPGERGPYGPKGDVGPAGLP 135
Query: 407 LPRTPPPSPPGSQGRQGPEPPSPVGQ 432
PR PP PPG G G P GQ
Sbjct: 136 GPRGPP-GPPGIPGPAGISVPGKPGQ 160
Score = 29.6 bits (65), Expect = 7.5
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 412 PPSPPGSQGRQGPE-PPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPG 464
PP P G +G GP PP G G+ P + GP GP V PG
Sbjct: 64 PPGPAGPRGHPGPSGPPGKPGYGSP-------GLQ-GEPGLPGPPGPSAVGKPG 109
Score = 29.3 bits (64), Expect = 9.8
Identities = 74/285 (25%), Positives = 88/285 (30%), Gaps = 62/285 (21%)
Query: 213 PGSSGQQD-------RGLP--PAAPVFPGETCLSVYCRTKATLKPVDQLGPGSNNVQWPH 263
PG GQQ RG P AP PG A +P ++ PG P
Sbjct: 155 PGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPS 214
Query: 264 RGPLELGVFEDENTVPVQASGLFHYQMGKSRSSPGRQVPICSQRFSEGEEAPRRKRNICT 323
GP +G EN VP Q + R PG PI G + P +R
Sbjct: 215 -GPPGVGK-RGENGVPGQPG------IKGDRGFPGEMGPIGPP----GPQGPPGERG--- 259
Query: 324 EKRSRPADPPFSPTGFRLIIYTG-PSTPGNFAPGHWARPRVRALLWDAGRGAAAGRGLCA 382
P G G P PG PG P + G GL
Sbjct: 260 ------------PEGIGKPGAAGAPGQPG--IPGTKGLPGAPGIAGPPGPPGFGKPGLPG 305
Query: 383 LGGTKRGSQAATGAQPSVATWRAVLPRTPP-PSPPGSQGRQGPE---------------- 425
L G + + G A LP P PPG+ G QGP+
Sbjct: 306 LKGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETG 365
Query: 426 PPSPVGQAQALEEACECGVD-----TARPEVGGPHG-PLLVAPPG 464
P P G A E G D +P + GP G P L P G
Sbjct: 366 PAGPAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKG 410
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 37.4 bits (85), Expect = 0.036
Identities = 33/104 (31%), Positives = 35/104 (33%), Gaps = 30/104 (28%)
Query: 408 PRTPPPSPPGSQGRQGPEPPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPGQRV 467
PR PP P G + P PP+ A C P GG GP AP QR
Sbjct: 41 PRPAPPRPGEEPGNRHPPPPA------ARTHPGSCRARCPSPAAGGLRGPWTAAPGRQRA 94
Query: 468 AVRRRHHEVTAVDDLRAEQAARAAPETRVLRVCVRVRVWAGRDP 511
E AA A PE R RVWA R P
Sbjct: 95 ----------------DEGAAAARPE--------RQRVWARRLP 114
Score = 32.0 bits (71), Expect = 1.5
Identities = 26/92 (28%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Query: 382 ALGGTKRGSQAATGAQPS-VATWRAVLPRTPPPSPPGSQGRQGPEPPSPVGQAQALEEAC 440
A G +R + A A+P W LP + PG + P PP P + L
Sbjct: 87 AAPGRQRADEGAAAARPERQRVWARRLPGSAAAPAPGRDALRLPPPPPPPPERPRL---- 142
Query: 441 ECGVDTARPEVGGPHGPLLVAPPGQRVAVRRR 472
P G GP APP A R R
Sbjct: 143 --------PPAGLAGGPADSAPPSPAPAPRSR 166
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 37.0 bits (84), Expect = 0.047
Identities = 80/307 (26%), Positives = 109/307 (35%), Gaps = 84/307 (27%)
Query: 187 AFRLGRQSRQQPLESSHCPDLPYHPSPGSSGQQDR--GLPPAAPVFPGETCLSVYCRTKA 244
AFR Q + Q D P P + ++R GLPP P+ PG
Sbjct: 136 AFRALVQEKIQKRNQRQSGDRRQLPPPPTPANEERRGGLPPL-PLHPGG----------- 183
Query: 245 TLKPVDQLGPGSNNVQWPHRGPLELGVFEDENTVPVQASGLFHYQMGKSRSSPGRQVPIC 304
DQ GP GPL LG+ TV +Q + SS R +P
Sbjct: 184 -----DQGGPPV--------GPLSLGLA----TVDIQNPDI--------TSSRYRGLP-- 216
Query: 305 SQRFSEGEEAPRRKRNICTEKRSRPADPPFSPTGFRLIIYTGPSTPGNFAPGHWARPRVR 364
+ G +KR+ +K+ AD +P+GF+ + + G F + P +R
Sbjct: 217 ----APGPSPADKKRS--GKKKISKADIG-APSGFKHVSHVGWDPQNGFDVNN-LDPDLR 268
Query: 365 ALLWDAGRGAAAGRG----------LCALGGTKRGSQAATGAQPSVATWRAVLPRTPPPS 414
+L AG A + GG + Q +P LP PPPS
Sbjct: 269 SLFSRAGISEAQLTDAETSKLIYDFIEDQGGLEAVRQEMRRQEP--------LPPPPPPS 320
Query: 415 --------PP---GSQGRQGPEPPSPVGQA------QALEEACECGVDTARPEVGGPHGP 457
PP G++GR GP PP P+G A + G P G GP
Sbjct: 321 RGGNQLPRPPIVGGNKGRSGPLPPVPLGIAPPPPTPRGPPPPGRGGPPPPPPPATGRSGP 380
Query: 458 LLVAPPG 464
L PPG
Sbjct: 381 LPPPPPG 387
Score = 30.0 bits (66), Expect = 5.7
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 13/69 (18%)
Query: 407 LPRTPPPSPPGSQGRQGPEPP------------SPVGQAQALEEACECGVDTARPEVGGP 454
+P PPP PP GP PP +P G AL + G+ + G P
Sbjct: 393 MPPPPPPPPPPPSSGNGPAPPPLPPALVPAGGLAPGGGRGALLDQIRQGIQLNKTP-GAP 451
Query: 455 HGPLLVAPP 463
L PP
Sbjct: 452 ESSALQPPP 460
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 37.0 bits (84), Expect = 0.047
Identities = 58/203 (28%), Positives = 75/203 (36%), Gaps = 51/203 (25%)
Query: 329 PADPPFSPTGFRLIIYTGPST---------PGNF-APGHWARPRVRALLWDAGRGAAAGR 378
PA PP P G GPS PG F +PG R RA +GR +AGR
Sbjct: 69 PAPPPPPPPG-------GPSRSERPRAGLRPGAFVSPGPLGR---RASC--SGRAGSAGR 116
Query: 379 GLC---ALGGTKRGSQAATGAQPSVATWR---AVLPRTPPPSPPGSQ--GRQGPE----- 425
C AL +RG A P++ T+ A PR P PGS+ GR G E
Sbjct: 117 LRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRV 176
Query: 426 -----PPSPVGQAQALEEACECGVDTAR----PEVGG-PHGPLLVAPPGQRVAVRRRHHE 475
PP G + + AR P + G GP++++ V R+H
Sbjct: 177 PLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLS------GVNRQHRW 230
Query: 476 VTAVDDLRAEQAARAAPETRVLR 498
R+ A R LR
Sbjct: 231 PPGASPSRSLGEAGGERPARALR 253
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 37.0 bits (84), Expect = 0.047
Identities = 58/213 (27%), Positives = 81/213 (38%), Gaps = 29/213 (13%)
Query: 30 GVQGARAAVPNLLTCRRLCPERWVMAEEAGG---TSGPRVPLLKRESTTGLKLGG-SGKF 85
G + RAA P L C P A+ GG S R PL + +++ G G SG
Sbjct: 107 GRRSRRAAGPGL-DCAGSAPAP-SGAQSCGGPAPASALRRPLTQWDASGGGGRGSHSGPR 164
Query: 86 EGMGGCGRRELV---KKSEMSM------KSSRLGCSGVRSGWIMSALPT--RQLQGRRAG 134
G G GR +K+ +S+ K S C G+ S W S P R L R G
Sbjct: 165 AGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGG 224
Query: 135 LSHGEESVRDVGQKAIEVQEVPPTRLLLWV----PQQHGDHTGEELFAPLLRR----RPP 186
+ VR ++A +PP+ +L + HG + AP RP
Sbjct: 225 AAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTSGGRPT 284
Query: 187 AFRLGRQSRQQPLESSHCPDLP----YHPSPGS 215
R R+ P +++ LP H SP S
Sbjct: 285 GERSSREPLLDPSKAARASALPTARVAHASPPS 317
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 37.0 bits (84), Expect = 0.047
Identities = 58/203 (28%), Positives = 75/203 (36%), Gaps = 51/203 (25%)
Query: 329 PADPPFSPTGFRLIIYTGPST---------PGNF-APGHWARPRVRALLWDAGRGAAAGR 378
PA PP P G GPS PG F +PG R RA +GR +AGR
Sbjct: 69 PAPPPPPPPG-------GPSRSERPRAGLRPGAFVSPGPLGR---RASC--SGRAGSAGR 116
Query: 379 GLC---ALGGTKRGSQAATGAQPSVATWR---AVLPRTPPPSPPGSQ--GRQGPE----- 425
C AL +RG A P++ T+ A PR P PGS+ GR G E
Sbjct: 117 LRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECARRV 176
Query: 426 -----PPSPVGQAQALEEACECGVDTAR----PEVGG-PHGPLLVAPPGQRVAVRRRHHE 475
PP G + + AR P + G GP++++ V R+H
Sbjct: 177 PLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLS------GVNRQHRW 230
Query: 476 VTAVDDLRAEQAARAAPETRVLR 498
R+ A R LR
Sbjct: 231 PPGASPSRSLGEAGGERPARALR 253
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 37.0 bits (84), Expect = 0.047
Identities = 58/213 (27%), Positives = 81/213 (38%), Gaps = 29/213 (13%)
Query: 30 GVQGARAAVPNLLTCRRLCPERWVMAEEAGG---TSGPRVPLLKRESTTGLKLGG-SGKF 85
G + RAA P L C P A+ GG S R PL + +++ G G SG
Sbjct: 107 GRRSRRAAGPGL-DCAGSAPAP-SGAQSCGGPAPASALRRPLTQWDASGGGGRGSHSGPR 164
Query: 86 EGMGGCGRRELV---KKSEMSM------KSSRLGCSGVRSGWIMSALPT--RQLQGRRAG 134
G G GR +K+ +S+ K S C G+ S W S P R L R G
Sbjct: 165 AGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGG 224
Query: 135 LSHGEESVRDVGQKAIEVQEVPPTRLLLWV----PQQHGDHTGEELFAPLLRR----RPP 186
+ VR ++A +PP+ +L + HG + AP RP
Sbjct: 225 AAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTSGGRPT 284
Query: 187 AFRLGRQSRQQPLESSHCPDLP----YHPSPGS 215
R R+ P +++ LP H SP S
Sbjct: 285 GERSSREPLLDPSKAARASALPTARVAHASPPS 317
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 37.0 bits (84), Expect = 0.047
Identities = 44/133 (33%), Positives = 48/133 (36%), Gaps = 18/133 (13%)
Query: 346 GPSTPGNFAPGHWARPRVRALLWDAGR-GAAAGRGLCALGGTK--RGSQAATGAQPSVAT 402
GP P H RV + GR GA RGL G K RG G P
Sbjct: 509 GPQGPRGLQGPHGPPGRVGKM----GRPGADGARGLPGDTGPKGDRGFDGLPGL-PGEKG 563
Query: 403 WRAVLPRTPPPSPPGSQGRQGPE-PPSPVGQA-----QALEEACECGVDTARPEV----G 452
R P PPG G +G E PP P GQA + L T RP V G
Sbjct: 564 QRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDG 623
Query: 453 GPHGPLLVAPPGQ 465
P V PPG+
Sbjct: 624 APGAKGNVGPPGE 636
Score = 31.2 bits (69), Expect = 2.6
Identities = 79/269 (29%), Positives = 94/269 (34%), Gaps = 64/269 (23%)
Query: 220 DRGLPPAAPVFPGETCL-SVYCR--TKATLKPVDQLGP----GSNNVQWPHRGPLE---L 269
+RG PP P PGE L + R K L P LG G P GP +
Sbjct: 933 ERG-PPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPT 991
Query: 270 GVFEDENTV-PVQASGLFHYQMGKSRSSPGRQVPIC--------SQRFSEGEEAPRRKRN 320
G+ D+ PV A+G SPG + P+ Q SEG P K
Sbjct: 992 GLKGDKGPPGPVGANG-----------SPGERGPLGPAGGIGLPGQSGSEGPVGPAGK-- 1038
Query: 321 ICTEKRSRPADPPFSPTGFRLIIYTGPSTPGNFAPGHWARPRVRALLWDAGRGAAAGRGL 380
K SR P PTG I P G P A P + +G G
Sbjct: 1039 ----KGSRGERGPPGPTGKDGI----PGPLGPLGPPGAAGPSGE----EGDKGDVGAPGH 1086
Query: 381 CALGGTKRGSQAATGAQPSVATWRAVLPRTPPPSPPGSQGRQGPEPPSPVGQAQALEEAC 440
G K A QP + R PP G+QGR+G PP GQ
Sbjct: 1087 KGSKGDK--GDAGPPGQPGI---RGPAGHPGPPGADGAQGRRG--PPGLFGQK------- 1132
Query: 441 ECGVDTARPEVG--GPHG-PLLVAPPGQR 466
G D R VG GP G L PPG++
Sbjct: 1133 --GDDGVRGFVGVIGPPGLQGLPGPPGEK 1159
Score = 29.3 bits (64), Expect = 9.8
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 14/120 (11%)
Query: 350 PGNFAPGHWARPRVRALLWDAGRGAAAGRGLCALGGTKRGSQAATGAQPSVATWRAVLPR 409
PG+ P + PR +G + RGL G K G G + V +
Sbjct: 700 PGSAGPPGYPGPR-------GVKGTSGNRGLQGEKGEK-GEDGFPGFKGDVG----LKGD 747
Query: 410 TPPPSPPGSQGRQGPEPPSPVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPGQRVAV 469
P PG +G GPE P GQA E G + ++G P P PG + ++
Sbjct: 748 QGKPGAPGPRGEDGPE--GPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSI 805
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 36.6 bits (83), Expect = 0.061
Identities = 45/145 (31%), Positives = 51/145 (35%), Gaps = 24/145 (16%)
Query: 329 PADPPFSPTGFRLIIYTGPSTPGNFAPGHWARPRVRALLWDAGRGAAAG----RGLCALG 384
PA PP +P P PG P + R AG G RG
Sbjct: 1041 PAGPPGAPGA--------PGAPGPVGPA--GKSGDRGETGPAGPAGPVGPVGARGPAGPQ 1090
Query: 385 GTKRGSQAATGAQPS--VATWRAVLPRTPPPSPPGSQGRQGPEPPS-PVGQAQALEEACE 441
G RG + TG Q + R PP PPGS G QGP S P G A
Sbjct: 1091 GP-RGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGA 1149
Query: 442 CGVDTARPEVGGPHGPLLVAPPGQR 466
G D + G GP + PPG R
Sbjct: 1150 PGKD----GLNGLPGP--IGPPGPR 1168
Score = 32.7 bits (73), Expect = 0.89
Identities = 48/168 (28%), Positives = 53/168 (31%), Gaps = 53/168 (31%)
Query: 346 GPSTPGNFA--PGHWARPRVRALLWDAGRGAAAGR-------------GLCALGGTK--R 388
GP P FA PG +P + DAG AG G G K R
Sbjct: 806 GPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR 865
Query: 389 GSQAATGAQPSVATWRAVLPRTP-----PPSPPGSQGRQG-------------------P 424
GS GA V P P PP PPG G++G P
Sbjct: 866 GSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPP 925
Query: 425 EPPSPVGQAQALEEACECGVD--TARPEVGGPHGPL----LVAPPGQR 466
PP P G E G D P GP G +V PGQR
Sbjct: 926 GPPGPAG------EKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQR 967
Score = 31.6 bits (70), Expect = 2.0
Identities = 31/98 (31%), Positives = 35/98 (35%), Gaps = 11/98 (11%)
Query: 372 RGAAAGRGLCALGGTK--RGSQAATGAQ--PSVATWRAVLPRTPPPSPPGSQGRQGPEPP 427
+G RG L G K RG GA P R + PP P G+ G +G P
Sbjct: 727 QGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGP 786
Query: 428 S-PVGQAQALEEACECGVDTARPEVGGPHGPLLVAPPG 464
S P G A G R E G P PPG
Sbjct: 787 SGPAGPTGAR------GAPGDRGEPGPPGPAGFAGPPG 818
Score = 30.8 bits (68), Expect = 3.4
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 409 RTPPPSPPGSQGRQGPE-PPSPVGQAQAL---EEACECGVDTARPEVGGPHGPLLVAPPG 464
+T PP P G GR GP PP GQA + G E G P P V P G
Sbjct: 552 KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG 611
Query: 465 Q 465
+
Sbjct: 612 K 612
Score = 30.0 bits (66), Expect = 5.7
Identities = 50/192 (26%), Positives = 65/192 (33%), Gaps = 45/192 (23%)
Query: 292 KSRSSPGRQVPI--CSQRFSEGEEAPRRKRNICTEKRSRPADPPFSPTGFRLIIYTGPST 349
++++ PG +VP C +G E+P T++ + + P TG R GP
Sbjct: 77 ETKNCPGAEVPEGECCPVCPDGSESP-------TDQETTGVEGPKGDTGPR-----GPRG 124
Query: 350 PGNFAPGHWARPRVRALLWDAGRGAAAGRGLCALGGTKRGSQAATGAQPSVATWRAVLPR 409
P PG P L G G LGG + + S P
Sbjct: 125 PAG-PPGRDGIPGQPGLPGPPGPPGPPGPP--GLGGNFAPQLSYGYDEKSTGGISVPGPM 181
Query: 410 TP--------PPSPPGSQGRQGPE----------------PPSPVGQAQALEEACECGVD 445
P PP PG QG QGP PP P G+ EA + G
Sbjct: 182 GPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPG-- 239
Query: 446 TARPEVGGPHGP 457
RP GP GP
Sbjct: 240 --RPGERGPPGP 249
Score = 29.3 bits (64), Expect = 9.8
Identities = 41/143 (28%), Positives = 53/143 (37%), Gaps = 27/143 (18%)
Query: 329 PADPPFSPTGFRLIIYTGPSTPGNFAPGHWARPRVRALLWDAGRGAAAGRGLCALGGTKR 388
PA PP P GP P G VR G AAG +
Sbjct: 339 PAGPPGFPGAVGAKGEAGPQGPR----GSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQP 394
Query: 389 GSQAATGAQPSVATWRAVLPRTPPPSPPGSQGRQGPE----PPSPVGQAQALEEACECGV 444
G++ A GA P +A P PG++G GP+ PP P G + E G
Sbjct: 395 GAKGANGA-PGIAG---------APGFPGARGPSGPQGPGGPPGPKGNSG------EPGA 438
Query: 445 DTARPEVG--GPHGPLLV-APPG 464
++ + G G GP+ V PPG
Sbjct: 439 PGSKGDTGAKGEPGPVGVQGPPG 461
>gi|4505777 PHD finger protein 1 isoform a [Homo sapiens]
Length = 457
Score = 36.6 bits (83), Expect = 0.061
Identities = 42/131 (32%), Positives = 49/131 (37%), Gaps = 14/131 (10%)
Query: 307 RFSEGEEAPRRKRNICTEKRSRPADPPFSPTGFRLIIYTGPSTPGNFAPGHWARPRVRAL 366
RF G E +RK R P P PTG + GP G +PG RA
Sbjct: 315 RFISGREIKKRKCLFGLHARMPPPVEP--PTGDGALTRAGPWGRGLTSPGEAPEAGARAP 372
Query: 367 LWDA-GRGAAAGRGLC------ALGGTKRGSQA-ATGAQPSVATWRAVLPRTPPPSPPGS 418
+A G AG L A G GS A T A PS +LP T P+P G
Sbjct: 373 EEEAEGESGGAGATLSSAQSARAPGAEGAGSSAEGTAAAPS----GCLLPSTLLPAPQGP 428
Query: 419 QGRQGPEPPSP 429
G P+ P
Sbjct: 429 LGTVDPQTGHP 439
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,309,682
Number of Sequences: 37866
Number of extensions: 1675723
Number of successful extensions: 12770
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 517
Number of HSP's that attempted gapping in prelim test: 10143
Number of HSP's gapped (non-prelim): 2792
length of query: 551
length of database: 18,247,518
effective HSP length: 107
effective length of query: 444
effective length of database: 14,195,856
effective search space: 6302960064
effective search space used: 6302960064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.