Guide to the Human Genome
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Name: LOC100289963 Sequence: fasta or formatted (399aa) NCBI GI: 239749167
Description:

PREDICTED: hypothetical protein XP_002346933

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         35           2
 C cysteine            2.8         11           1
 D aspartate           2.0          8           2
 E glutamate           6.5         26           2
 F phenylalanine       2.0          8           1
 G glycine            13.5         54           2
 H histidine           2.0          8           2
 I isoleucine          1.0          4           1
 K lysine              2.3          9           2
 L leucine             8.5         34           3
 M methionine          1.5          6           1
 N asparagine          0.5          2           1
 P proline             8.5         34           2
 Q glutamine           6.3         25           2
 R arginine           13.5         54           3
 S serine              6.3         25           2
 T threonine           4.3         17           2
 V valine              7.3         29           1
 W tryptophan          2.3          9           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346933 
LOC100292590          0.471   PREDICTED: hypothetical protein 
LOC100289339          0.294   PREDICTED: hypothetical protein XP_002342810 
LOC100289339          0.294   PREDICTED: hypothetical protein 
FLJ31945              0.019   PREDICTED: hypothetical protein 
LOC100132369          0.019   PREDICTED: hypothetical protein 
LOC100132369          0.019   PREDICTED: hypothetical protein 
LOC100132369          0.019   PREDICTED: hypothetical protein 
RSBN1                 0.018   round spermatid basic protein 1 
FLJ31945              0.015   PREDICTED: hypothetical protein 
FLJ31945              0.015   PREDICTED: hypothetical protein 
EMID2                 0.015   EMI domain containing 2 
MBD6                  0.014   methyl-CpG binding domain protein 6 
LOC100289978          0.013   PREDICTED: hypothetical protein XP_002348035 
LOC100293471          0.013   PREDICTED: hypothetical protein 
LOC100290403          0.013   PREDICTED: hypothetical protein XP_002346677 
PKD1L1                0.011   polycystin-1L1 
LOC100129098          0.010   PREDICTED: hypothetical protein 
ZNF687                0.010   zinc finger protein 687 
DRD4                  0.009   dopamine receptor D4 
EOMES                 0.009   eomesodermin 
LOC100292801          0.009   PREDICTED: hypothetical protein 
LOC100290691          0.009   PREDICTED: hypothetical protein XP_002347934 
LOC100288156          0.009   PREDICTED: hypothetical protein XP_002344202 
LOC100288644          0.009   PREDICTED: hypothetical protein XP_002342521 
LOC100287119          0.009   PREDICTED: hypothetical protein XP_002342305 
LOC100292058          0.009   PREDICTED: hypothetical protein XP_002344766 
LOC100290367          0.009   PREDICTED: hypothetical protein XP_002347417 
LOC100131102          0.009   PREDICTED: hypothetical protein 
LOC100288730          0.009   PREDICTED: hypothetical protein XP_002343287 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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