Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289339 Sequence: fasta or formatted (140aa) NCBI GI: 239508911
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {140aa} PREDICTED: hypothetical protein XP_002342810
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0          7           2
 C cysteine            3.6          5           1
 D aspartate           0.7          1           1
 E glutamate           8.6         12           2
 F phenylalanine       1.4          2           1
 G glycine            17.9         25           2
 H histidine           0.0          0           0
 I isoleucine          1.4          2           1
 K lysine              5.0          7           2
 L leucine             7.9         11           2
 M methionine          4.3          6           1
 N asparagine          0.0          0           0
 P proline             6.4          9           1
 Q glutamine           2.9          4           2
 R arginine           11.4         16           2
 S serine             10.7         15           2
 T threonine           4.3          6           2
 V valine              5.0          7           1
 W tryptophan          2.9          4           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289339          1.000   PREDICTED: hypothetical protein XP_002342810 
LOC100289963          0.877   PREDICTED: hypothetical protein XP_002346933 
LOC100292590          0.873   PREDICTED: hypothetical protein 
LOC100292058          0.026   PREDICTED: hypothetical protein XP_002344766 
LOC100290367          0.026   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.026   PREDICTED: hypothetical protein XP_002343287 
HAGHL                 0.022   hydroxyacylglutathione hydrolase-like isoform 1 [Hom...
GS85                  0.019   PREDICTED: hypothetical protein LOC100128785 
GS85                  0.019   PREDICTED: hypothetical protein LOC100128785 
GS85                  0.019   PREDICTED: hypothetical protein LOC100128785 
LOC100287106          0.015   PREDICTED: hypothetical protein XP_002342470 
ANKRD58               0.015   ankyrin repeat domain 58 
C1orf167              0.011   PREDICTED: chromosome 1 open reading frame 167 [Hom...
C1orf167              0.011   PREDICTED: chromosome 1 open reading frame 167 [Hom...
C1orf167              0.011   PREDICTED: hypothetical protein LOC284498 
LOC100289978          0.011   PREDICTED: hypothetical protein XP_002348035 
LOC728046             0.011   PREDICTED: hypothetical protein 
RHOT2                 0.011   ras homolog gene family, member T2 
WNK4                  0.007   WNK lysine deficient protein kinase 4 
TNKS1BP1              0.007   tankyrase 1-binding protein 1 
POU4F2                0.007   Brn3b POU domain transcription factor 
LOC646670             0.007   PREDICTED: similar to COMM domain containing 4 [Hom...
LOC100293076          0.007   PREDICTED: hypothetical protein 
LOC732146             0.007   PREDICTED: hypothetical protein 
LOC732146             0.007   PREDICTED: hypothetical protein 
LOC644893             0.007   PREDICTED: hypothetical protein 
LOC644893             0.007   PREDICTED: hypothetical protein 
LOC645307             0.007   PREDICTED: hypothetical protein 
LOC100292296          0.004   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press