Guide to the Human Genome
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Name: LOC100291914 Sequence: fasta or formatted (205aa) NCBI GI: 239754415
Description:

PREDICTED: hypothetical protein XP_002345991

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         19           2
 C cysteine            2.9          6           2
 D aspartate           1.5          3           1
 E glutamate           3.9          8           2
 F phenylalanine       0.5          1           1
 G glycine            11.2         23           3
 H histidine           1.0          2           1
 I isoleucine          0.0          0           0
 K lysine              1.5          3           1
 L leucine             7.3         15           2
 M methionine          1.5          3           1
 N asparagine          0.5          1           1
 P proline            15.1         31           3
 Q glutamine           4.4          9           1
 R arginine           18.5         38           3
 S serine             11.7         24           3
 T threonine           3.9          8           1
 V valine              3.4          7           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345991 
LOC100290611          1.000   PREDICTED: hypothetical protein XP_002346841 
LOC100287467          1.000   PREDICTED: hypothetical protein XP_002342727 
FLJ22184              0.060   PREDICTED: hypothetical protein FLJ22184 
MLL2                  0.055   myeloid/lymphoid or mixed-lineage leukemia 2 
FLJ37078              0.055   hypothetical protein LOC222183 
FLJ22184              0.050   PREDICTED: hypothetical protein FLJ22184 
COL14A1               0.050   collagen, type XIV, alpha 1 
LOC100292172          0.048   PREDICTED: hypothetical protein 
LOC100130360          0.048   PREDICTED: hypothetical protein 
FLJ22184              0.045   PREDICTED: hypothetical protein LOC80164 
BAHD1                 0.045   bromo adjacent homology domain containing 1 
PRB3                  0.043   proline-rich protein BstNI subfamily 3 precursor [H...
LOC729417             0.043   PREDICTED: hypothetical protein 
LOC729417             0.043   PREDICTED: hypothetical protein 
LOC729417             0.043   PREDICTED: hypothetical protein 
CASKIN2               0.043   cask-interacting protein 2 isoform b 
CASKIN2               0.043   cask-interacting protein 2 isoform a 
SHANK1                0.043   SH3 and multiple ankyrin repeat domains 1 
LOC100289763          0.040   PREDICTED: hypothetical protein XP_002347867 
WIPF1                 0.040   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.040   WAS/WASL interacting protein family, member 1 
DACT3                 0.040   thymus expressed gene 3-like 
TROAP                 0.040   tastin isoform 1 
SYNPO                 0.040   synaptopodin isoform A 
PAIP1                 0.040   poly(A) binding protein interacting protein 1 isofor...
PRR14                 0.040   proline rich 14 
SYNJ1                 0.037   synaptojanin 1 isoform a 
SYNJ1                 0.037   synaptojanin 1 isoform b 
PRB4                  0.037   proline-rich protein BstNI subfamily 4 precursor [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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