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Search of human proteins with 239754042
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
(346 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 712 0.0
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 712 0.0
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 712 0.0
gi|110832843 TBP-associated factor 4 [Homo sapiens] 63 4e-10
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 58 1e-08
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 55 9e-08
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 53 5e-07
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 53 5e-07
gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo ... 52 6e-07
gi|239757987 PREDICTED: hypothetical protein [Homo sapiens] 52 1e-06
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 52 1e-06
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 52 1e-06
gi|23510413 sorting nexin 26 [Homo sapiens] 50 3e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 50 4e-06
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 50 4e-06
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 50 4e-06
gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo sap... 49 5e-06
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 49 9e-06
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 48 1e-05
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 48 1e-05
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 48 1e-05
gi|188536004 zinc finger protein 469 [Homo sapiens] 48 1e-05
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens] 48 1e-05
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 48 1e-05
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 47 2e-05
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ... 47 3e-05
gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo ... 47 3e-05
gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo ... 47 3e-05
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ... 47 3e-05
gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo ... 47 3e-05
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 712 bits (1837), Expect = 0.0
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MLSVSGSDPQVLEEHPSRKLGRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQA 60
MLSVSGSDPQVLEEHPSRKLGRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQA
Sbjct: 1 MLSVSGSDPQVLEEHPSRKLGRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQA 60
Query: 61 RTPAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQG 120
RTPAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQG
Sbjct: 61 RTPAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQG 120
Query: 121 TISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCP 180
TISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCP
Sbjct: 121 TISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCP 180
Query: 181 GARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPP 240
GARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPP
Sbjct: 181 GARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPP 240
Query: 241 TEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALAPPKLSPPFPCLAQSASRAA 300
TEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALAPPKLSPPFPCLAQSASRAA
Sbjct: 241 TEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALAPPKLSPPFPCLAQSASRAA 300
Query: 301 GARRALSASRGRRGLLGSGSLALPLPGCREPRQRLHGSDGAAGARC 346
GARRALSASRGRRGLLGSGSLALPLPGCREPRQRLHGSDGAAGARC
Sbjct: 301 GARRALSASRGRRGLLGSGSLALPLPGCREPRQRLHGSDGAAGARC 346
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 712 bits (1837), Expect = 0.0
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MLSVSGSDPQVLEEHPSRKLGRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQA 60
MLSVSGSDPQVLEEHPSRKLGRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQA
Sbjct: 1 MLSVSGSDPQVLEEHPSRKLGRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQA 60
Query: 61 RTPAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQG 120
RTPAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQG
Sbjct: 61 RTPAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQG 120
Query: 121 TISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCP 180
TISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCP
Sbjct: 121 TISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCP 180
Query: 181 GARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPP 240
GARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPP
Sbjct: 181 GARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPP 240
Query: 241 TEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALAPPKLSPPFPCLAQSASRAA 300
TEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALAPPKLSPPFPCLAQSASRAA
Sbjct: 241 TEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALAPPKLSPPFPCLAQSASRAA 300
Query: 301 GARRALSASRGRRGLLGSGSLALPLPGCREPRQRLHGSDGAAGARC 346
GARRALSASRGRRGLLGSGSLALPLPGCREPRQRLHGSDGAAGARC
Sbjct: 301 GARRALSASRGRRGLLGSGSLALPLPGCREPRQRLHGSDGAAGARC 346
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 712 bits (1837), Expect = 0.0
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MLSVSGSDPQVLEEHPSRKLGRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQA 60
MLSVSGSDPQVLEEHPSRKLGRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQA
Sbjct: 1 MLSVSGSDPQVLEEHPSRKLGRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQA 60
Query: 61 RTPAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQG 120
RTPAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQG
Sbjct: 61 RTPAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQG 120
Query: 121 TISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCP 180
TISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCP
Sbjct: 121 TISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCP 180
Query: 181 GARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPP 240
GARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPP
Sbjct: 181 GARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPP 240
Query: 241 TEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALAPPKLSPPFPCLAQSASRAA 300
TEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALAPPKLSPPFPCLAQSASRAA
Sbjct: 241 TEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALAPPKLSPPFPCLAQSASRAA 300
Query: 301 GARRALSASRGRRGLLGSGSLALPLPGCREPRQRLHGSDGAAGARC 346
GARRALSASRGRRGLLGSGSLALPLPGCREPRQRLHGSDGAAGARC
Sbjct: 301 GARRALSASRGRRGLLGSGSLALPLPGCREPRQRLHGSDGAAGARC 346
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 62.8 bits (151), Expect = 4e-10
Identities = 91/326 (27%), Positives = 114/326 (34%), Gaps = 68/326 (20%)
Query: 74 SPRGPTLRGRAKTTRGR-------SQGAGATETSAGNSAATAAPHPTPASYPQGTISPPQ 126
+PR P +R A G + AGA + A AAP P PA + PQ
Sbjct: 44 APRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQ 103
Query: 127 LPAP----RPKRFGGKQRPLWRIR-------------GWETTVARLPEPR---------- 159
P P RP G P ++R VA PEP
Sbjct: 104 RPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGP 163
Query: 160 ---VGKLGKGPPPRPAP-----PGTRCCPGAR-----AAQLLREAAAAAQGL----RAPA 202
+ G GP P P P PG PGA +A LL AAA + PA
Sbjct: 164 AALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPA 223
Query: 203 ARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPA 262
A LP P APG P AAA AP P+ +P P P PA
Sbjct: 224 ALLPLPKPAAPGTVIQTPPFVGAAAPP------APAAPSPPAAPAPAAPAAAPP-PPPPA 276
Query: 263 QRLESGCRGHCSRGAPALAPPKLSPPFPCLAQSASRAAGARRALSASRGRRGLLG----S 318
+ GH G P AP + P P AQ+ A A A+ G G+ G
Sbjct: 277 PATLARPPGH-PAGPPTAAP---AVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPG 332
Query: 319 GSLALPLPGCR--EPRQRLHGSDGAA 342
+ A P PG + P++ + + AA
Sbjct: 333 AAAAAPAPGVKAESPKRVVQAAPPAA 358
Score = 45.8 bits (107), Expect = 6e-05
Identities = 57/192 (29%), Positives = 69/192 (35%), Gaps = 31/192 (16%)
Query: 94 AGATETSAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVA 153
A + +A AA AA P P P PP PA P P G A
Sbjct: 253 AAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAA 312
Query: 154 RLPEPRVG-KLGKGPPPRPAPPGTRCCPGARA---AQLLREAAAAAQGLRA--PAA---- 203
P P G G P P PG +A ++++ A AAQ L A PA+
Sbjct: 313 PAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAAS 372
Query: 204 ---------RLPEPTR---RAPGRPGCLPTAAAAAA--------DALWRSRRAPLPPTEF 243
LP P APG P LP AA A A RA L PT
Sbjct: 373 MVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATLTPT-V 431
Query: 244 LSPRRTRPRKHP 255
L+PR +P ++P
Sbjct: 432 LAPRLPQPPQNP 443
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 58.2 bits (139), Expect = 1e-08
Identities = 94/330 (28%), Positives = 111/330 (33%), Gaps = 44/330 (13%)
Query: 31 PAKGKTICTRFGDKRSSGQ---AGNKSERELQARTPAPPRERGESSSPRGPTLRGRAKTT 87
P G F R +GQ AG K+ + +R P+P S P P R T
Sbjct: 96 PTLGDLFAGGFPVLRPAGQRDVAGGKTGQGPGSRAPSPRLPNKTISGPLIPPASPRLGNT 155
Query: 88 RGRSQGAGATETSAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGK-QRPLWRIR 146
+ A +A TA P P + P T PP P P P + PL
Sbjct: 156 -----------SEAHGAARTAPPRPNVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLVSPP 204
Query: 147 GWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQ--GLRAPAAR 204
G T LP PPP P PP T P A +L + A Q L P
Sbjct: 205 G-PLTKGNLPVVAPPVPCAPPPPPPPPPPTP--PPLPPASVLSDKAVKPQLAPLHLPPIP 261
Query: 205 LPEPTRRAPGRPGCLPTAAAAAADALW-RSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQ 263
P P G PG A+ A DA + PLPP SPR + P P
Sbjct: 262 PPLPLLPPCGYPGLKAEPASPAQDAQEPPAPPPPLPPYASCSPRASLPAP-------PLP 314
Query: 264 RLESGCRGHCSRGAPALAPPKLSPPFPCLAQSASRAA--------GARRALSASRGRRGL 315
+ S S P PPK SP F Q A A G++ L R R
Sbjct: 315 GVNS------SSETPPPLPPK-SPSFQAPPQKAGAQALPAPPAPPGSQPFLQKKRHGRPG 367
Query: 316 LGSGSL-ALPLPGCREPRQRLHGSDGAAGA 344
G G L P P R P L A A
Sbjct: 368 AGGGKLNPPPAPPARSPTTELSSKSQQATA 397
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 55.1 bits (131), Expect = 9e-08
Identities = 80/273 (29%), Positives = 96/273 (35%), Gaps = 68/273 (24%)
Query: 81 RGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQR 140
RG+ T R+ G E A T AP P S P PP LPAP QR
Sbjct: 3 RGQRFTPHPRTPAPGCPEV-APQPEGTDAPGPAVCS-PTARAPPPILPAP--------QR 52
Query: 141 PLWRIRGWETTV----------ARLPEPRVGKLGK--------GPPPRPAPPGTRCCPGA 182
P R R WE A L P +LG+ P P P P R G
Sbjct: 53 PPTRAREWEGAAWAAGATGVGAALLALPGSRRLGRVPLTFREASPGPAPGAPRARGSCGR 112
Query: 183 RAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTE 242
R A ++A A AAR P +R+ R CLP + +
Sbjct: 113 EPGPRRRRAPSSAGKRPAAAARAAPPRQRSLAR--CLPRSVGSC---------------- 154
Query: 243 FLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALAPPKLSPPFPCLA--QSASRAA 300
RP P RR +R CR HC R P PP L P + + A+ A
Sbjct: 155 ------VRPSVGPSLPRRHCRR---HCRCHCRR-RPLPKPPPLQPRLGSASPPRLAAPLA 204
Query: 301 GARR-ALS------ASRGRRGLLGSGSLALPLP 326
G+R +LS R R G G LPLP
Sbjct: 205 GSRAPSLSPFPRRCRRRAERSPAGHG---LPLP 234
Score = 35.0 bits (79), Expect = 0.099
Identities = 53/198 (26%), Positives = 70/198 (35%), Gaps = 36/198 (18%)
Query: 63 PAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQGTI 122
P PR RG GP R RA ++ G+ A A + + S + ++
Sbjct: 101 PGAPRARGSCGREPGPR-RRRAPSSAGKRPAAAARAAPPRQRSLARCLPRSVGSCVRPSV 159
Query: 123 SP--PQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPP--GTRC 178
P P+ R R ++RPL + P P +LG PPR A P G+R
Sbjct: 160 GPSLPRRHCRRHCRCHCRRRPLPK-----------PPPLQPRLGSASPPRLAAPLAGSRA 208
Query: 179 ---CPGARAAQLLREAAAAAQGLRAPAA------------RLPEPTRRAPG-RPGCL--- 219
P R + E + A GL P + R RR G R GC
Sbjct: 209 PSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQGCALGS 268
Query: 220 -PTAAAAAADALWRSRRA 236
P A AA RRA
Sbjct: 269 PPIPAGPAAPGRAGERRA 286
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 52.8 bits (125), Expect = 5e-07
Identities = 87/278 (31%), Positives = 101/278 (36%), Gaps = 47/278 (16%)
Query: 80 LRGRA-KTTRGRSQGAGATETSAGN---SAATAAPHPTPASYPQGTISPPQ-----LPA- 129
LR R + + R+QG GA+ + S AA T + +PQG PQ LPA
Sbjct: 68 LRSRGFREIKERAQGPGASPWGRWDWSPSPRFAARLSTSSPFPQGRAQRPQRGGVDLPAT 127
Query: 130 ---PRPK---RFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPP-PRPAPPGTRCC-PG 181
PR + R G R R R V RLP PR + +GP P P+PP R P
Sbjct: 128 PGGPRGQCAGRSGDVLRRAGRRRARPPPVPRLPAPRAPRRPRGPATPDPSPPAGRPHGPA 187
Query: 182 ARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLP--------TAAAAAADALWRS 233
RAA R A LRAP R + PG G AA A AL
Sbjct: 188 GRAAPGRRPGCTAQ--LRAPGRRGRQRLLVHPGGGGRRQWQRLARARRAALLALGALAHL 245
Query: 234 RRAP-----------LPPTEFLSPRRTRPRKHPERTRRPAQRLESG------CRGHCSRG 276
RR P L P P H R R+ RL G C G R
Sbjct: 246 RRCPDTGGGQHLHQLLAPGLCGDGAAVWPAAHAGRPRQ--LRLVHGPGLGLLCLGGIQRN 303
Query: 277 APALAPPKLSPPFPCLAQSASRAAGARRALSASRGRRG 314
PAL+ P P L S S A G R R G
Sbjct: 304 PPALSCLDPQPEPPNLWSSESPAGGRERGRLRPRAAEG 341
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 52.8 bits (125), Expect = 5e-07
Identities = 89/348 (25%), Positives = 130/348 (37%), Gaps = 40/348 (11%)
Query: 22 RYRSPTPL---------RPAKGKTICTRFGDKRSSGQAGNKSERELQARTPAPPRERGES 72
R RSP+P R + KT TR D+ S Q+ ++ + ++R+ R RG S
Sbjct: 1759 RGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGS 1818
Query: 73 S-SPRGPTLRGRAKTTRGRSQGAGATE-TSAGNSAATAAPHP--------TPASYPQGTI 122
R P + ++T+ R +G T TS S + +P P +PA++ +
Sbjct: 1819 GYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRS 1878
Query: 123 SPPQLPAPRPKRFGGKQRPLWRIRGWETT--VARLPEPRVGKLGKGPPPRPAPPGTRCCP 180
P + R + + P+ R R T R R + + PP TR
Sbjct: 1879 RTPLISRRRSR---SRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRS 1935
Query: 181 GARAAQLLREAAAAAQGL--RAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPL 238
+R R + + + R +R P TRR R P + RSR +P+
Sbjct: 1936 RSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRR-SRSRTSPITRRRS-----RSRTSPV 1989
Query: 239 PPTEFLSPRRTRPRKHPERTRRPAQRLESGCRGHC-SRGAPALAPPKLS-PPFPCLAQSA 296
+ RR+R R P RR R R SR PA+ S P +S
Sbjct: 1990 ------TRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSR 2043
Query: 297 SRAAGARRALSASRGRRGLLGSGSLALPLPGCREPRQRLHGSDGAAGA 344
SR+ A R S SR R G SL P R SD + A
Sbjct: 2044 SRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSA 2091
Score = 49.3 bits (116), Expect = 5e-06
Identities = 88/340 (25%), Positives = 126/340 (37%), Gaps = 32/340 (9%)
Query: 16 PSRKLGRYRSPTPLRPAKGKT-ICTRFGDKRSSGQAGNKSERELQARTPAPPRERGESSS 74
PSR++GR RSP + + ++ T+ G RS +S + P+ RG S S
Sbjct: 477 PSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRS 536
Query: 75 PRGP-TLRGRAKTTRGRSQGAGATETSAGNSAATAAPHP-TPASYPQGTISPPQLPAPRP 132
P+ P R R RGRS+ A + + + A TPA + S + PA R
Sbjct: 537 PQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGR---SRSRTPARRR 593
Query: 133 KRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRC-CPGARAAQLLREA 191
R R R R T AR G+ PA +R P R ++ A
Sbjct: 594 SR----SRTPTRRRSRSRTPAR--------RGRSRSRTPARRRSRTRSPVRRRSRSRSPA 641
Query: 192 AAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRR-APLPPTEFLSPRRTR 250
+ + AR R P R G + A RSR A + +PRR R
Sbjct: 642 RRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGR 701
Query: 251 PRKHP------ERTRRPAQRLESGC---RGHCSRGAPALAPPKLSPPFPCLAQSASRAAG 301
R +R P +R SG R + SR + + SP S+ R+
Sbjct: 702 SRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRS 761
Query: 302 ARRALSASRGRRGLLGSGSLALPLPGCRE---PRQRLHGS 338
S ++ R L S S + P P + PR+ GS
Sbjct: 762 LSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGS 801
Score = 48.1 bits (113), Expect = 1e-05
Identities = 72/318 (22%), Positives = 113/318 (35%), Gaps = 50/318 (15%)
Query: 16 PSRKLGRYRSPTPLRPAKGKTICTRFGDKRSS----------------GQAGNKSERELQ 59
P+R+ GR RS TP R + ++ R G RS G++G+ SER+ +
Sbjct: 674 PARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNK 733
Query: 60 ARTPAPPRERGESSSPRGPTLRGRAKTTRGRS--QGAGATETSAGNSAATAAPHP----- 112
+RT R +SSP R ++ +R S + + S S + ++P P
Sbjct: 734 SRTSQ--RRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQ 791
Query: 113 TPASYPQGTISPPQLPA---PRPKRFGGKQRPLWRIR--GWETTVARLPEPRVGKLGKGP 167
TP + S P+ + PR R P + + ++ + P P+V G
Sbjct: 792 TPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKS---GT 848
Query: 168 PPRPAP------------PGTRCCPGARAAQLLREAAAA---AQGLRAPAARLPEPTRRA 212
PPR P R C + L+ + G P + P R++
Sbjct: 849 PPRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQS 908
Query: 213 PGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQRLESGCRGH 272
P R A RS P+ RT PR+ R+ P +ES
Sbjct: 909 PSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRR--SRSVSPCSNVESRLLPR 966
Query: 273 CSRGAPALAPPKLSPPFP 290
S + K+ P P
Sbjct: 967 YSHSGSSSPDTKVKPETP 984
Score = 47.4 bits (111), Expect = 2e-05
Identities = 85/365 (23%), Positives = 130/365 (35%), Gaps = 68/365 (18%)
Query: 3 SVSGSDPQVLEEH---PSRKLGRYRSPTPLRPA--------------KGK---------- 35
S SGS P+V ++ P + G SP P PA KG+
Sbjct: 1596 SRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSST 1655
Query: 36 TICTRFGDKRSSGQAGNKSERELQARTPAPPRERGESSSP---RGPTLRGRAKTTRGRSQ 92
K + + G++S E + ++ PPR R SSP R L R+++ +
Sbjct: 1656 ESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPE 1715
Query: 93 GAGATETSAGNSAATAAPHP---TPASYPQGTISPPQL---------PAPRPKRFGGKQR 140
T S + ++P P + +S + + S P+ P+P+P+ G QR
Sbjct: 1716 TRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPR---GLQR 1772
Query: 141 PLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRA 200
R R +T R R + G +R +R+ R + R+
Sbjct: 1773 SRSRSRREKTRTTR----RRDRSGSSQSTSRRRQRSR----SRSRVTRRRRGGSGYHSRS 1824
Query: 201 PAARLPEPT--RRAPGRPGCLPT----AAAAAADALWRSRRAPLPP---------TEFLS 245
PA + T RR GR PT + + + A W+ R+ P T +S
Sbjct: 1825 PARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLIS 1884
Query: 246 PRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALAPPKLSPPFPCLAQSASRAAGARRA 305
RR+R R P RR R R SR +P S P + + R
Sbjct: 1885 RRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRR 1944
Query: 306 LSASR 310
S SR
Sbjct: 1945 RSRSR 1949
Score = 44.3 bits (103), Expect = 2e-04
Identities = 74/331 (22%), Positives = 120/331 (36%), Gaps = 73/331 (22%)
Query: 5 SGSDPQVLEEHPSRKLGRYRSP-------TPLRPAKG-------KTIC-TRFGDKRSSG- 48
S +P+ L + P + SP TP R G KT+ T G + SG
Sbjct: 1482 SSPEPKALPQTPRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGS 1541
Query: 49 --------------QAGNKSERELQARTPAPPRERGESSSPRGPTLRGRAKTTRGRSQGA 94
++ + S + +A+T P R+R S S P + +++ + RS+
Sbjct: 1542 SQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGS--SPEVDSKSRLSPRRSRSG 1599
Query: 95 GATETSAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRG------- 147
+ E AA A G+ S P+ AP P+ + R +G
Sbjct: 1600 SSPEVKDKPRAAPRA--------QSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEG 1651
Query: 148 ---WETTVARLPEPRVGKLGKGPPPRP-----APPGTRCCPGA----RAAQLLREAAAAA 195
E++ P+ R + G P P PP R + R A+L R + +A+
Sbjct: 1652 SSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSAS 1711
Query: 196 QG-----------LRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFL 244
R+P+ PEP ++ +A++ SRR P +
Sbjct: 1712 SSPETRSRTPPRHRRSPSVSSPEPAEKS---RSSRRRRSASSPRTKTTSRRGRSPSPKPR 1768
Query: 245 SPRRTRPRKHPERTRRPAQRLESGCRGHCSR 275
+R+R R E+TR +R SG SR
Sbjct: 1769 GLQRSRSRSRREKTRTTRRRDRSGSSQSTSR 1799
Score = 43.9 bits (102), Expect = 2e-04
Identities = 89/346 (25%), Positives = 127/346 (36%), Gaps = 61/346 (17%)
Query: 17 SRKLGRYR-SPTPLRPAKGKTI-CTRFGDKRSSGQAGNKSERELQARTPAPPRERGESSS 74
+R+ R R SP R ++ +T TR +RS + R ++RTP PR+R S S
Sbjct: 1990 TRRRSRSRTSPVTRRRSRSRTSPVTR---RRSRSRTPPAIRRRSRSRTPLLPRKRSRSRS 2046
Query: 75 PRGPTLRGRAKTTR--------GRSQGAGATETSAGNSA--ATAAPHPTPASYPQGTISP 124
P R R++T R RS A +++G+S+ + +A P ++ P
Sbjct: 2047 PLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPP 2106
Query: 125 PQLPAPRPKRFGG---KQRPLWRIR--------GWETTVARLPEPRVGKLGKGPPPRPAP 173
L + R F PL R R G T + + G + GP PR
Sbjct: 2107 VALNSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSSRTPMSVLQQAGGSMMDGPGPRIPD 2166
Query: 174 PGTRCCPGARAAQLLREAAAA-------------AQGLRAPAARLPEPT-----RRAPGR 215
P A + A A A GL A +++P P R AP
Sbjct: 2167 HQRTSVPENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAA 2226
Query: 216 PGCLPTAAAAAADALWRSRRAPLPPTEF-LSPRRTRPRKHPERTRRPAQRLESGCRGHCS 274
AA+AA S R P PT L+ RT P R +
Sbjct: 2227 NLASRIPAASAAAMNLASARTPAIPTAVNLADSRTPAAAAAMNLASP--------RTAVA 2278
Query: 275 RGAPALAPPKLSPPFPCLAQSASRAAGARRALSASRGRRGLLGSGS 320
A LA P+ +P P + + +R A ALS L GSG+
Sbjct: 2279 PSAVNLADPR-TPTAPAVNLAGARTPAALAALS-------LTGSGT 2316
Score = 42.7 bits (99), Expect = 5e-04
Identities = 66/278 (23%), Positives = 97/278 (34%), Gaps = 27/278 (9%)
Query: 57 ELQARTPAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPAS 116
E +P P S P P A TR RS + +S+ ++ P P P
Sbjct: 372 ERHGGSPQPLATTPLSQEPVNPP--SEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTK 429
Query: 117 YPQGTISPPQLPAPRP----------------KRFGGKQRPLWRIRGWETTVARLPEPRV 160
+ S P+ P P P + G +R + R P
Sbjct: 430 VSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPAT 489
Query: 161 GKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQG-LRAPAARLPEPTRRAPGRPGCL 219
K G+ R P R +R+ Q R +A G R+P R + + PG
Sbjct: 490 AKRGRS---RSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSR 546
Query: 220 PTAAAAAADALWRSR-RAPLPPTEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAP 278
T + + R R + P T S RT R+ R+R PA+R S R R +
Sbjct: 547 NTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARR-RSRSRTPTRRRSR 605
Query: 279 ALAPPKLS---PPFPCLAQSASRAAGARRALSASRGRR 313
+ P + P +S +R+ RR+ S S RR
Sbjct: 606 SRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARR 643
Score = 41.2 bits (95), Expect = 0.001
Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 3 SVSGSDPQVLEEHPSRKLGRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQART 62
S S S+ L P L R SPTP + + + G E T
Sbjct: 2559 SSSDSEGSSLPVQPEVALKRVPSPTPA--------------PKEAVREGRPPEP-----T 2599
Query: 63 PAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPAS-YPQGT 121
PA + R SSS + + ++ S + ++ +S+ +S+++++ P+PA PQ
Sbjct: 2600 PAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQAL 2659
Query: 122 ISP--PQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAP 173
P P+ P P +R ++P+ +R +++ P R + P P+P+P
Sbjct: 2660 PKPASPKKPPPGERRSRSPRKPIDSLRD-SRSLSYSPVER-----RRPSPQPSP 2707
Score = 40.0 bits (92), Expect = 0.003
Identities = 64/284 (22%), Positives = 118/284 (41%), Gaps = 22/284 (7%)
Query: 16 PSRKLGRYRSPTPLRP-AKGKTICTRFGDKRSSGQAGNKSER---ELQARTPAPPRERGE 71
P+R+ GR RS TP R ++ +T R R+ + G R ++RT +P R R
Sbjct: 578 PARR-GRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSR 636
Query: 72 SSSPRGPTLRGRAKT--TRGRSQGAGATETSAGNSAATAAPHPTPASYPQGTISPPQLPA 129
S SP + R R++T RGRS+ T G S + + S + + +
Sbjct: 637 SRSPARRSGRSRSRTPARRGRSR--SRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRS 694
Query: 130 PRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCPGARAAQLLR 189
P+R + R L R RG + +R P+ R G+ G + ++ + ++ ++
Sbjct: 695 RTPRRGRSRSRSLVR-RG--RSHSRTPQRR-GRSGSSSERKNKSRTSQRRSRSNSSPEMK 750
Query: 190 EAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRT 249
++ +++ R+ L P +A R + + ++ +S+ P S +
Sbjct: 751 KSRISSRRSRS----LSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKA 806
Query: 250 RPRKHPERTRR-----PAQRLESGCRGHCSRGAPALAPPKLSPP 288
+ R P R+R P Q+ ++ R S +P +PP
Sbjct: 807 KSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPP 850
Score = 37.7 bits (86), Expect = 0.015
Identities = 87/392 (22%), Positives = 133/392 (33%), Gaps = 100/392 (25%)
Query: 18 RKLGRYRSPTPLRPAKGK---------TICTRFGDKRSSGQAGNKSERELQA---RTPAP 65
R+ RSPTP + K K + R K+SS + ++SE E + R+P P
Sbjct: 175 RESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTP 234
Query: 66 ---------PRERGESSSPRGPTLRGR----------AKTTRGRSQGA------------ 94
R+R S++P + R + T+R RS+ A
Sbjct: 235 KSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGR 294
Query: 95 -------------------GATETSAGNSAATAAPHPT-----------------PASYP 118
G T T +S TA P+ P+ P
Sbjct: 295 SPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSP 354
Query: 119 QGTISPPQLPAPRP---KRFGGKQRPLWRI----------RGWETTVARLPEPRVGKLGK 165
+ + + P+ PAP P +R GG +PL T R P KL +
Sbjct: 355 ERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQ 414
Query: 166 GPPPRPAPPGTRCCPGARAAQLLREA--AAAAQGLRAPAARLPEPTRRAPGRPGCLPTAA 223
+PP + +R A E+ A A G + P R+ GR + +
Sbjct: 415 SSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHS 474
Query: 224 AAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALAPP 283
+ + RS R+P S RT ++ R+R P R + +P
Sbjct: 475 HTPSRRMGRS-RSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGR 533
Query: 284 KLSPPFPCLAQSAS-----RAAGARRALSASR 310
SP P ++S + R+ ARR S SR
Sbjct: 534 SRSPQRPGWSRSRNTQRRGRSRSARRGRSHSR 565
Score = 31.2 bits (69), Expect = 1.4
Identities = 65/315 (20%), Positives = 110/315 (34%), Gaps = 27/315 (8%)
Query: 17 SRKLGRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQARTPAPPRERGESSSPR 76
+R+ R R+ +P+ + ++ + +RS + + R ++RT R R S +P
Sbjct: 1966 TRRRSRSRT-SPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPP 2024
Query: 77 GPTLRGRAKT-----TRGRSQG---------AGATETSAGNSAATAAPHPTPASYPQGTI 122
R R++T R RS+ + T+ G + T +P G+
Sbjct: 2025 AIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSS 2084
Query: 123 SPPQLPA--PRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCP 180
S A P + G + P + + P + P R PG
Sbjct: 2085 SDRSRSATPPATRNHSGSRTPPVALNSSRMSCFSRP-----SMSPTPLDRCRSPGMLEPL 2139
Query: 181 GARAAQLLREAAAAAQGLRAPAARLPEPTRRA-PGRPGCLPTAAAAAADALWRSRRAPLP 239
G+ + A + P R+P+ R + P A A A +L +R P
Sbjct: 2140 GSSRTPMSVLQQAGGSMMDGPGPRIPDHQRTSVPENHAQSRIALALTAISLGTARPPPSM 2199
Query: 240 PTEFLSPRRTR-PRKHPERTRRPAQRLESGCRGHCSRGAPALAPPKLSPPFPC---LAQS 295
L+ R ++ P P + R A R + A +P P LA S
Sbjct: 2200 SAAGLAARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTPAIPTAVNLADS 2259
Query: 296 ASRAAGARRALSASR 310
+ AA A L++ R
Sbjct: 2260 RTPAAAAAMNLASPR 2274
Score = 30.8 bits (68), Expect = 1.9
Identities = 74/311 (23%), Positives = 108/311 (34%), Gaps = 62/311 (19%)
Query: 60 ARTPAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASY-- 117
++ PAP ++P L R + + T A +A A TPA+
Sbjct: 2209 SQVPAPVPLMSLRTAPAA-NLASRIPAASAAAMNLASARTPAIPTAVNLADSRTPAAAAA 2267
Query: 118 -----PQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPA 172
P+ ++P + P+ P + G T A + G G PP A
Sbjct: 2268 MNLASPRTAVAPSAVNLADPRT---PTAPAVNLAGARTPAALAA---LSLTGSGTPPTAA 2321
Query: 173 --PPGTRCCPGARAAQLL--REAAAAAQ----GLRAPAARLPEPTRRAPGRPGCLPTAAA 224
P +R +A L+ R A A A G R AA P A P
Sbjct: 2322 NYPSSSRTPQAPASANLVGPRSAHATAPVNIAGSRTAAALAPASLTSARMAP-------- 2373
Query: 225 AAADALWRSRRAPLPPTEFLSPR---------RTR-PRKHPERTRRPAQRLESGCRGHCS 274
A + A S R PL E +S R R+R P P ++R ++R S
Sbjct: 2374 ALSGANLTSPRVPLSAYERVSGRTSPPLLDRARSRTPPSAPSQSRMTSERAPSPSSRMGQ 2433
Query: 275 RGAPALAPPKLSPP-----------FPCL-------AQSASRAAGARRALSASRGRRGLL 316
+ +L PP P CL A S S ++GA ++S G
Sbjct: 2434 APSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQSLSSGAVATTTSSAGDH--- 2490
Query: 317 GSGSLALPLPG 327
+G L++P PG
Sbjct: 2491 -NGMLSVPAPG 2500
Score = 30.4 bits (67), Expect = 2.4
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 51 GNKSERELQARTPAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNS------ 104
G + L A PA R SSS + + ++ S ++ S G+S
Sbjct: 2514 GAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPE 2573
Query: 105 -AATAAPHPTPASYPQGTISPPQLPAPRPKR 134
A P PTPA P+ + + P P P +
Sbjct: 2574 VALKRVPSPTPA--PKEAVREGRPPEPTPAK 2602
>gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo
sapiens]
Length = 278
Score = 52.4 bits (124), Expect = 6e-07
Identities = 54/188 (28%), Positives = 66/188 (35%), Gaps = 30/188 (15%)
Query: 63 PAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQGTI 122
P PP R + RGP +GR GR+ A SA TA P P P
Sbjct: 40 PRPPPARLPRNGRRGPLWKGRGPA--GRAPAA---------SAETALPRPREPPEPGAGP 88
Query: 123 SPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEP-------RVGKL----GKGPP--- 168
SP + P PR R P ++ W + R P R+ L GPP
Sbjct: 89 SPKRSPPPRAPRASSLAAPEPQVGDWTSREGRRGGPCLPGARRRLFSLSVSRSSGPPRAR 148
Query: 169 ---PRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAA 225
P PA G G A + A A AP P R PG P CL +
Sbjct: 149 SCAPHPAREGMATTRGPEAGLRVSGRGARAGSSTAPTRAQASPAR--PGFPPCLRSPPCP 206
Query: 226 AADALWRS 233
A+ +RS
Sbjct: 207 ASSRAFRS 214
Score = 37.0 bits (84), Expect = 0.026
Identities = 38/116 (32%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 199 RAPAARLPEPTRRAP---GRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHP 255
R P ARLP RR P GR AA+A AL R R P P SP+R+ P + P
Sbjct: 41 RPPPARLPRNGRRGPLWKGRGPAGRAPAASAETALPRPREPP-EPGAGPSPKRSPPPRAP 99
Query: 256 ERTRRPAQRLESG--CRGHCSRGAPALAPPKLSPPFPCLAQSASRAAGARRALSAS 309
+ A + G RG P L + + S SR++G RA S +
Sbjct: 100 RASSLAAPEPQVGDWTSREGRRGGPCLPGARRR----LFSLSVSRSSGPPRARSCA 151
>gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 445
Score = 51.6 bits (122), Expect = 1e-06
Identities = 83/303 (27%), Positives = 111/303 (36%), Gaps = 56/303 (18%)
Query: 29 LRPAKGKTICTRFGDKRSSGQAGNKSERELQARTPAP---PRERGESS---SPRGPTLRG 82
LR ++ + TR G + ++ + N+ E + P P G+ + G LRG
Sbjct: 125 LRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRG 184
Query: 83 RAKTTRGRSQGAGATETSAGNSAATA------------APHPTPASYPQGTISPPQLPAP 130
KT GRS +G + AG+ AATA P P PA P PP PA
Sbjct: 185 EPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGP-PARLPPAPPGPPLRPA- 242
Query: 131 RPKRFGGKQRPLWRIRGWETTVARLPEPRV---GKLGKGPPP--RP-----APPGTRCC- 179
RP R R+ E +LP P + PPP RP PP T C
Sbjct: 243 RP--HNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRPRLRVLTPPFTLLCA 300
Query: 180 --------PGARAAQLL-REAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADAL 230
P R+A L+ R A + P++R + PT A +AD
Sbjct: 301 LPERGSRTPSTRSAVLVDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCSAD-- 358
Query: 231 WRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALAPPKLSP-PF 289
PLP P P+ + R+P RL R + GAP P P P
Sbjct: 359 ------PLPRPPSFVPSLPSPQAQGQAVRQP--RL---LRAALALGAPRGRTPSPGPGPA 407
Query: 290 PCL 292
P L
Sbjct: 408 PAL 410
Score = 33.5 bits (75), Expect = 0.29
Identities = 61/234 (26%), Positives = 73/234 (31%), Gaps = 29/234 (12%)
Query: 105 AATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGK-- 162
A AP P S T+ + KR G KQR G ARL V
Sbjct: 18 ATCQAPFPYIVSAQLPTLDKQETLVAEEKR-GWKQRGR---NGENADTARLFGTTVYTFE 73
Query: 163 -LGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGC--- 218
LG PP R P +R PG A R + +P PG PG
Sbjct: 74 VLGALPPDRSPTPRSRVSPGVTGL-----AVGPGNPKRCQRSGVPY---EGPGAPGGQQL 125
Query: 219 ------LPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQRLESGCRGH 272
LP DA R R P E P RP R +++ G
Sbjct: 126 RKSRARLPRTRPGREDAAVRGRNRD--PAE---PGSLRPTSLGFPARAGQGQVQGAAPGR 180
Query: 273 CSRGAPALAPPKLSPPFPCLAQSASRAAGARRALSASRGRRGLLGSGSLALPLP 326
RG P P + P + + RAA A L A R G + P P
Sbjct: 181 RLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAP 234
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
4 [Homo sapiens]
Length = 1039
Score = 51.6 bits (122), Expect = 1e-06
Identities = 62/200 (31%), Positives = 75/200 (37%), Gaps = 46/200 (23%)
Query: 109 APHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPP 168
+P P + P T++PP P PR GG R R W AR P P LG+ PP
Sbjct: 461 SPAPAAPAQPGATLAPPTPPRPRD---GGTPRHS-RALSWAARAAR-PLPLF--LGRAPP 513
Query: 169 PRPA---PPG----TRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPT 221
PRPA PP TR PG RA+ RAPA R P P PG
Sbjct: 514 PRPAVEQPPPKVYVTRVRPGQRASP------------RAPAPRAPWPP-----FPGVF-- 554
Query: 222 AAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRP-AQRLESGCRGHCSRGAPAL 280
PLP + +P R PR H RT P A + R ++G
Sbjct: 555 -----------LHPRPLPRVQLRAPPRP-PRPHGRRTGGPQATQPRPPARAQATQGGREG 602
Query: 281 APPKLSPPFPCLAQSASRAA 300
L P P + + S A
Sbjct: 603 QARTLGPAAPTVDSNLSSEA 622
Score = 42.0 bits (97), Expect = 8e-04
Identities = 47/169 (27%), Positives = 61/169 (36%), Gaps = 24/169 (14%)
Query: 58 LQARTPAPPRERGESSSPRGPTLRGR--AKTTRGRSQGAGATETSAGNSAATAAPHPTPA 115
L+ APPR +S +P P G A T R + G S S A A P P
Sbjct: 447 LEPTEAAPPRSGPQSPAPAAPAQPGATLAPPTPPRPRDGGTPRHSRALSWAARAARPLPL 506
Query: 116 SYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPR---------------V 160
+ P + P PK + + R+R + R P PR +
Sbjct: 507 FLGRAPPPRPAVEQPPPKVY------VTRVRPGQRASPRAPAPRAPWPPFPGVFLHPRPL 560
Query: 161 GKLGKGPPPRPAPPGTRCCPGARAAQLLREA-AAAAQGLRAPAARLPEP 208
++ PPRP P R G +A Q A A A QG R AR P
Sbjct: 561 PRVQLRAPPRPPRPHGRRTGGPQATQPRPPARAQATQGGREGQARTLGP 609
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 51.6 bits (122), Expect = 1e-06
Identities = 68/249 (27%), Positives = 87/249 (34%), Gaps = 33/249 (13%)
Query: 60 ARTPAPPRERGESSSPRGPTLRGR----AKTTRGRSQGAGATETSAGNSAATAAPHP--- 112
AR P RG + + GP RG + S G+ +++ S T
Sbjct: 1945 ARAVPEPGPRGRAGTEAGPGARGGRLGLVRVASALSSGSESSDRSGFRRQLTFIKESPGL 2004
Query: 113 ----TPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPP 168
+ S + S PQ +PR R L R E A PR G P
Sbjct: 2005 RRRRSELSSAESAASAPQGASPRRGRPALPAVFLCSSRCEELRAA----PRQGPA----P 2056
Query: 169 PRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRP---------GCL 219
R PP R PG R A+ + + +RAPAAR PE +R P G +
Sbjct: 2057 ARQRPPAARPSPGERPARRTTSESPSRLPVRAPAAR-PETVKRYASLPHISVARRPDGAV 2115
Query: 220 PTAAAAAADALWRSRRAPLPPTEFLSP----RRTRPRKHPERTRRPAQRLESGCRGHCSR 275
P A A+A A S P P +P RR R P R RG
Sbjct: 2116 PAAPASADAARRSSDGEPRPLPRVAAPGTTWRRIRDEDVPHILRSTLPATALPLRGSTPE 2175
Query: 276 GAPALAPPK 284
APA PP+
Sbjct: 2176 DAPAGPPPR 2184
Score = 47.0 bits (110), Expect = 3e-05
Identities = 86/327 (26%), Positives = 120/327 (36%), Gaps = 71/327 (21%)
Query: 44 KRSSGQAGNKSERELQARTPAPPRERGESSSPRGPTL-RGRAKTTRGRSQGAGATETSAG 102
+++ G+ G S R + R A + G SP GP RG KTT G
Sbjct: 1739 RQAEGEMG--SARRPEKRGAASVKTSGSPRSPAGPEKPRGTQKTTPG-------VPAVLR 1789
Query: 103 NSAATAAPHPTPASYPQGT---------ISPP---QLPAPRPKRFGGKQRPLWRIRGWET 150
P P P + P+GT ++PP Q AP G+QR R +T
Sbjct: 1790 GRTVIYVPSPAPRAQPKGTPGPRATPRKVAPPCLAQPAAPAKVPSPGQQRSRSLHRPAKT 1849
Query: 151 T-VARLPEPRVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPT 209
+ +A L + PPR A P R L + +++ +PA++ P P
Sbjct: 1850 SELATLSQ----------PPRSATPPAR----------LAKTPSSSSSQTSPASQ-PLPR 1888
Query: 210 RRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQRLESGC 269
+R P AA AL +P+P T P RT K +T+R R+
Sbjct: 1889 KRPP---------VTQAAGALPGPGASPVPKT----PARTLLAKQ-HKTQRSPVRIPFMQ 1934
Query: 270 RGHCSRGAPAL--APPKLSPPFPCLAQSASRAAGARRAL----------SASRGRRGLLG 317
R RG P L A P+ P ++ A G R L S S R G
Sbjct: 1935 R-PARRGPPPLARAVPEPGPRGRAGTEAGPGARGGRLGLVRVASALSSGSESSDRSGFRR 1993
Query: 318 SGSLALPLPGCREPRQRLHGSDGAAGA 344
+ PG R R L ++ AA A
Sbjct: 1994 QLTFIKESPGLRRRRSELSSAESAASA 2020
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 50.1 bits (118), Expect = 3e-06
Identities = 88/338 (26%), Positives = 128/338 (37%), Gaps = 52/338 (15%)
Query: 3 SVSGSDPQV----LEEHPSRKLGRYRSPT-PLRPAKGKTICTRFGDKRSSGQA--GNKSE 55
S++GS P LEE +R GR +PT P P + R +R Q G S
Sbjct: 532 SLAGSCPSTRLLTLEEAQARTQGRLGTPTEPTTPKAPASPAERRKGERGEKQRKPGGSSW 591
Query: 56 RELQA--RTPAPPRER-----GESSSPRGP--------TLRGRAKTTRGRSQGAGATETS 100
+ A R P+ PR++ G + +P P TLR SQ +GA
Sbjct: 592 KTFFALGRGPSVPRKKPLPWLGGTRAPPQPSGSRPDTVTLRSAKSEESLSSQASGAELLG 651
Query: 101 AGNSAATAAPHPTPASYPQGTISPPQLP-----APRPKRFGGKQRPLWRIRGWETTV--- 152
AG + A+A PTPA P ++ P +P A P +Q ++RG + +
Sbjct: 652 AGGAPASAT--PTPALSPGRSLRPHLIPLLLRGAEAPLTDACQQEMCSKLRGAQGPLGPD 709
Query: 153 --ARLPEPRVGKL--GKGPPPRPAPPG--TRCCPGARAAQLLREAAAAAQGLRAPAARLP 206
+ LP P + L G PPP P P RA Q+ + + G PA++ P
Sbjct: 710 MESPLPPPPLSLLRPGGAPPPPPKNPARLMALALAERAQQVAEQQSQQECGGTPPASQSP 769
Query: 207 -------EPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTR 259
E G G P + A W P P + R ++ +R
Sbjct: 770 FHRSLSLEVGGEPLGTSGSGPPPNSLAHPGAWVPGPPPYLPRQQSDGSLLRSQRPMGTSR 829
Query: 260 R----PAQ---RLESGCRGHCSRGAPALAPPKLSPPFP 290
R PAQ +L +G G + A A +P + P
Sbjct: 830 RGLRGPAQVSAQLRAGGGGRDAPEAAAQSPCSVPSQVP 867
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 49.7 bits (117), Expect = 4e-06
Identities = 87/334 (26%), Positives = 110/334 (32%), Gaps = 50/334 (14%)
Query: 26 PTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQARTPAPPRERGESSSPRGPTLRGRAK 85
P P PA + GDK G G + R+ + TP P G P P L G
Sbjct: 122 PGPQGPAGEQGPRGDRGDKGEKGAPGPRG-RDGEPGTPGNPGPPGPPGPPGPPGLGGNFA 180
Query: 86 TTRGRSQGAGATETSAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRI 145
+Q AG + AG + P P+G P P P+
Sbjct: 181 -----AQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQ-------------- 221
Query: 146 RGWETTVARLPEPRV-GKLG-KGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAA 203
G++ EP V G +G +GPP P PG G + A +G P
Sbjct: 222 -GFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAG-------KPGKAGERGPPGPQG 273
Query: 204 RLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPL------PPTEFLSPRRTRPRKHPER 257
P PG PG D AP P E SP PR P
Sbjct: 274 ARGFPG--TPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGE 331
Query: 258 TRRPAQRLESGCRGHCSRGAPALAP----PKLSPPFPCLAQSASRAAG--ARRALSASRG 311
R +G RG+ + PA P P P FP A A AG R ++G
Sbjct: 332 RGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPG-APGAKGEAGPTGARGPEGAQG 390
Query: 312 RRGLLGSGSLALPLPGCREPRQRLHGSDGAAGAR 345
RG G+ P P G+DG GA+
Sbjct: 391 PRGEPGTPGSPGPAGASGNP-----GTDGIPGAK 419
Score = 39.3 bits (90), Expect = 0.005
Identities = 84/327 (25%), Positives = 103/327 (31%), Gaps = 81/327 (24%)
Query: 42 GDKRSSGQAGNKSERELQARTPAPPRERGE--------SSSPRGPT----LRGRAKTTRG 89
G + SG G E LQ PP E+GE + P GP RG
Sbjct: 930 GARGDSGPPGRAGEPGLQGPA-GPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQ 988
Query: 90 RSQ-GAGATETSAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGW 148
R + G +G AP + P G + PP L P
Sbjct: 989 RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGP------------------ 1030
Query: 149 ETTVARLPEPRVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEP 208
G P R PG PG R+ AA +G R + P
Sbjct: 1031 ----------------AGEPGREGSPGADGPPG-------RDGAAGVKGDRGETGAVGAP 1067
Query: 209 TRRAPGRPGCLPTAAAAA--ADALWRSRRAPLPPTEFLSPRRTR----PRKHPERTRRPA 262
APG PG A D + P+ P+ R + PR P
Sbjct: 1068 --GAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPG 1125
Query: 263 QRLESGCRGHCS-RGAPALAPPKLSPPFPCLAQSASRAAGARRALSASRGRRGLLG---- 317
+R G RG +G P PP P Q AS AG S RG G +G
Sbjct: 1126 ERGLKGHRGFTGLQGLP-------GPPGPSGDQGASGPAGP----SGPRGPPGPVGPSGK 1174
Query: 318 SGSLALPLP-GCREPRQRLHGSDGAAG 343
G+ +P P G PR R G G AG
Sbjct: 1175 DGANGIPGPIGPPGPRGR-SGETGPAG 1200
Score = 33.9 bits (76), Expect = 0.22
Identities = 81/324 (25%), Positives = 101/324 (31%), Gaps = 51/324 (15%)
Query: 42 GDKRSSGQAGNKSERELQARTPAPPRERGESSSPRGPTLRGRAKTTRGRS--QGAGATET 99
GD +G+ G ER PP +G P P L G K RG GA
Sbjct: 252 GDDGEAGKPGKAGER-------GPPGPQGARGFPGTPGLPG-VKGHRGYPGLDGAKGEAG 303
Query: 100 SAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPR 159
+ G + +P + P G P LP R + T A R
Sbjct: 304 APGVKGESGSPGENGSPGPMG---PRGLPGERGR----------------TGPAGAAGAR 344
Query: 160 VGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAP-AARLPEPTRRAPGRPGC 218
GP P P G PG A + A G R P A+ P PG PG
Sbjct: 345 GNDGQPGPAGPPGPVGPAGGPGFPGAPGAK-GEAGPTGARGPEGAQGPRGEPGTPGSPGP 403
Query: 219 LPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPR--KHPERTRRP----AQRLESGCRGH 272
+ D + ++ + P +P PR P+ P Q E G G
Sbjct: 404 AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGF 463
Query: 273 CSRGAPALAPPKLSP---PFPCLAQSASRAAGARRALS--------ASRGRRGLLGSGSL 321
P P P P P + A G + + G RG G L
Sbjct: 464 KGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGL 523
Query: 322 ALP--LPGCREPRQRLHGSDGAAG 343
A P PG R P L G GA G
Sbjct: 524 AGPKGAPGERGP-SGLAGPKGANG 546
Score = 33.9 bits (76), Expect = 0.22
Identities = 86/335 (25%), Positives = 103/335 (30%), Gaps = 71/335 (21%)
Query: 66 PRERGESSSPRGPTLRGR-AKTTRGRSQGAGATETSAGNSAATAAPHPT-------PASY 117
P + GE P P LRG K + G AG AP P+ P
Sbjct: 614 PGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGP 673
Query: 118 P-----------QGTISPPQLPAPRPKR-FGGKQ-----RPLWRIRGWETTVARLPEPRV 160
P G P L PR +R F G++ + L RG T P+
Sbjct: 674 PGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGT-DGPKG 732
Query: 161 GKLGKGPPPRPAPPGTRCCPGARAAQLLR--------------EAAAAAQGLRAPAARLP 206
GPP PPG + PG R A + E A G R +
Sbjct: 733 ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG 792
Query: 207 EP-------TRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTR 259
P + G PG +A A A R P P F P P
Sbjct: 793 PPGPAGANGEKGEVGPPGPAGSAGARGAPG-ERGETGPPGPAGFAGP--------PGADG 843
Query: 260 RPAQRLESGCRGH-CSRGAPALAPPKLSPPFPCLAQSASRAAGARRA--------LSASR 310
+P + E G G GAP P P P + GAR A +
Sbjct: 844 QPGAKGEQGEAGQKGDAGAPGPQGPS-GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAA 902
Query: 311 GRRGLLGSGSLALPLPGCREPRQRLHGSDGAAGAR 345
GR G GS P PG P G DG GAR
Sbjct: 903 GRVGPPGSNGNPGP-PGPPGP----SGKDGPKGAR 932
Score = 32.3 bits (72), Expect = 0.64
Identities = 41/159 (25%), Positives = 56/159 (35%), Gaps = 20/159 (12%)
Query: 25 SPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQARTPAPPR-ERGESSSPRGPTLRGR 83
SP P P + G + G +G R +Q P PR ++GE+ P L+G
Sbjct: 1075 SPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQG--PQGPRGDKGEAGEPGERGLKGH 1132
Query: 84 AKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLW 143
T QG +G+ A+ P+ P G + P G P+
Sbjct: 1133 RGFTG--LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGAN-----GIPGPIG 1185
Query: 144 RIRGWETTVARLPEPRVGKLGK-GPPPRPAPPGTRCCPG 181
P R G+ G GPP P PPG PG
Sbjct: 1186 PPG---------PRGRSGETGPAGPPGNPGPPGPPGPPG 1215
Score = 28.5 bits (62), Expect = 9.2
Identities = 69/260 (26%), Positives = 86/260 (33%), Gaps = 27/260 (10%)
Query: 104 SAATAAPHPTPASYPQGTISP---PQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRV 160
+ A+ P P G I P+ P P P+ G+Q P A P R
Sbjct: 94 ATASGQPGPKGQKGEPGDIKDIVGPKGP-PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRD 152
Query: 161 GKLGK----GPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRP 216
G+ G GPP P PPG G AAQ+ A G + + P G P
Sbjct: 153 GEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPP 212
Query: 217 GCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQRLESGCRGHC-SR 275
G A A + P P E PR P +P E+G G R
Sbjct: 213 G------PAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGER 266
Query: 276 GAPALAPPKLSPPFPCLAQSASRAAGARRALSASRGRRGLLG-SGSLALP----LPGCRE 330
G P + P P L + L ++G G G G P PG
Sbjct: 267 GPPGPQGARGFPGTPGL--PGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMG 324
Query: 331 PR-----QRLHGSDGAAGAR 345
PR + G GAAGAR
Sbjct: 325 PRGLPGERGRTGPAGAAGAR 344
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 49.7 bits (117), Expect = 4e-06
Identities = 87/334 (26%), Positives = 110/334 (32%), Gaps = 50/334 (14%)
Query: 26 PTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQARTPAPPRERGESSSPRGPTLRGRAK 85
P P PA + GDK G G + R+ + TP P G P P L G
Sbjct: 53 PGPQGPAGEQGPRGDRGDKGEKGAPGPRG-RDGEPGTPGNPGPPGPPGPPGPPGLGGNFA 111
Query: 86 TTRGRSQGAGATETSAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRI 145
+Q AG + AG + P P+G P P P+
Sbjct: 112 -----AQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQ-------------- 152
Query: 146 RGWETTVARLPEPRV-GKLG-KGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAA 203
G++ EP V G +G +GPP P PG G + A +G P
Sbjct: 153 -GFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAG-------KPGKAGERGPPGPQG 204
Query: 204 RLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPL------PPTEFLSPRRTRPRKHPER 257
P PG PG D AP P E SP PR P
Sbjct: 205 ARGFPG--TPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGE 262
Query: 258 TRRPAQRLESGCRGHCSRGAPALAP----PKLSPPFPCLAQSASRAAG--ARRALSASRG 311
R +G RG+ + PA P P P FP A A AG R ++G
Sbjct: 263 RGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPG-APGAKGEAGPTGARGPEGAQG 321
Query: 312 RRGLLGSGSLALPLPGCREPRQRLHGSDGAAGAR 345
RG G+ P P G+DG GA+
Sbjct: 322 PRGEPGTPGSPGPAGASGNP-----GTDGIPGAK 350
Score = 39.3 bits (90), Expect = 0.005
Identities = 84/327 (25%), Positives = 103/327 (31%), Gaps = 81/327 (24%)
Query: 42 GDKRSSGQAGNKSERELQARTPAPPRERGE--------SSSPRGPT----LRGRAKTTRG 89
G + SG G E LQ PP E+GE + P GP RG
Sbjct: 861 GARGDSGPPGRAGEPGLQGPA-GPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQ 919
Query: 90 RSQ-GAGATETSAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGW 148
R + G +G AP + P G + PP L P
Sbjct: 920 RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGP------------------ 961
Query: 149 ETTVARLPEPRVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEP 208
G P R PG PG R+ AA +G R + P
Sbjct: 962 ----------------AGEPGREGSPGADGPPG-------RDGAAGVKGDRGETGAVGAP 998
Query: 209 TRRAPGRPGCLPTAAAAA--ADALWRSRRAPLPPTEFLSPRRTR----PRKHPERTRRPA 262
APG PG A D + P+ P+ R + PR P
Sbjct: 999 --GAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPG 1056
Query: 263 QRLESGCRGHCS-RGAPALAPPKLSPPFPCLAQSASRAAGARRALSASRGRRGLLG---- 317
+R G RG +G P PP P Q AS AG S RG G +G
Sbjct: 1057 ERGLKGHRGFTGLQGLP-------GPPGPSGDQGASGPAGP----SGPRGPPGPVGPSGK 1105
Query: 318 SGSLALPLP-GCREPRQRLHGSDGAAG 343
G+ +P P G PR R G G AG
Sbjct: 1106 DGANGIPGPIGPPGPRGR-SGETGPAG 1131
Score = 33.9 bits (76), Expect = 0.22
Identities = 81/324 (25%), Positives = 101/324 (31%), Gaps = 51/324 (15%)
Query: 42 GDKRSSGQAGNKSERELQARTPAPPRERGESSSPRGPTLRGRAKTTRGRS--QGAGATET 99
GD +G+ G ER PP +G P P L G K RG GA
Sbjct: 183 GDDGEAGKPGKAGER-------GPPGPQGARGFPGTPGLPG-VKGHRGYPGLDGAKGEAG 234
Query: 100 SAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPR 159
+ G + +P + P G P LP R + T A R
Sbjct: 235 APGVKGESGSPGENGSPGPMG---PRGLPGERGR----------------TGPAGAAGAR 275
Query: 160 VGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAP-AARLPEPTRRAPGRPGC 218
GP P P G PG A + A G R P A+ P PG PG
Sbjct: 276 GNDGQPGPAGPPGPVGPAGGPGFPGAPGAK-GEAGPTGARGPEGAQGPRGEPGTPGSPGP 334
Query: 219 LPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPR--KHPERTRRP----AQRLESGCRGH 272
+ D + ++ + P +P PR P+ P Q E G G
Sbjct: 335 AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGF 394
Query: 273 CSRGAPALAPPKLSP---PFPCLAQSASRAAGARRALS--------ASRGRRGLLGSGSL 321
P P P P P + A G + + G RG G L
Sbjct: 395 KGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGL 454
Query: 322 ALP--LPGCREPRQRLHGSDGAAG 343
A P PG R P L G GA G
Sbjct: 455 AGPKGAPGERGP-SGLAGPKGANG 477
Score = 33.9 bits (76), Expect = 0.22
Identities = 86/335 (25%), Positives = 103/335 (30%), Gaps = 71/335 (21%)
Query: 66 PRERGESSSPRGPTLRGR-AKTTRGRSQGAGATETSAGNSAATAAPHPT-------PASY 117
P + GE P P LRG K + G AG AP P+ P
Sbjct: 545 PGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGP 604
Query: 118 P-----------QGTISPPQLPAPRPKR-FGGKQ-----RPLWRIRGWETTVARLPEPRV 160
P G P L PR +R F G++ + L RG T P+
Sbjct: 605 PGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGT-DGPKG 663
Query: 161 GKLGKGPPPRPAPPGTRCCPGARAAQLLR--------------EAAAAAQGLRAPAARLP 206
GPP PPG + PG R A + E A G R +
Sbjct: 664 ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG 723
Query: 207 EP-------TRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTR 259
P + G PG +A A A R P P F P P
Sbjct: 724 PPGPAGANGEKGEVGPPGPAGSAGARGAPG-ERGETGPPGPAGFAGP--------PGADG 774
Query: 260 RPAQRLESGCRGH-CSRGAPALAPPKLSPPFPCLAQSASRAAGARRA--------LSASR 310
+P + E G G GAP P P P + GAR A +
Sbjct: 775 QPGAKGEQGEAGQKGDAGAPGPQGPS-GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAA 833
Query: 311 GRRGLLGSGSLALPLPGCREPRQRLHGSDGAAGAR 345
GR G GS P PG P G DG GAR
Sbjct: 834 GRVGPPGSNGNPGP-PGPPGP----SGKDGPKGAR 863
Score = 32.3 bits (72), Expect = 0.64
Identities = 41/159 (25%), Positives = 56/159 (35%), Gaps = 20/159 (12%)
Query: 25 SPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQARTPAPPR-ERGESSSPRGPTLRGR 83
SP P P + G + G +G R +Q P PR ++GE+ P L+G
Sbjct: 1006 SPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQG--PQGPRGDKGEAGEPGERGLKGH 1063
Query: 84 AKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLW 143
T QG +G+ A+ P+ P G + P G P+
Sbjct: 1064 RGFTG--LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGAN-----GIPGPIG 1116
Query: 144 RIRGWETTVARLPEPRVGKLGK-GPPPRPAPPGTRCCPG 181
P R G+ G GPP P PPG PG
Sbjct: 1117 PPG---------PRGRSGETGPAGPPGNPGPPGPPGPPG 1146
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 49.7 bits (117), Expect = 4e-06
Identities = 67/229 (29%), Positives = 77/229 (33%), Gaps = 59/229 (25%)
Query: 104 SAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKL 163
+AA AAP PTPA PP PAP AR P
Sbjct: 121 AAAAAAPPPTPA--------PPPPPAPVA----------------AAAPARAPRAAAAAA 156
Query: 164 GKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAA 223
P P PA PG R RAA L A A PA P RRAP P A
Sbjct: 157 TAPPSPGPAQPGPR---AQRAAPLAAPPPAPA---APPAVAPPAGPRRAP------PPAV 204
Query: 224 AAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALAPP 283
AA R PLPP +P P++ + P + + G R A P
Sbjct: 205 AA--------REPPLPPP-------PQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARPV 249
Query: 284 KLSPPFPCLAQSA--------SRAAGARRALSASRGRRGLLGSGSLALP 324
L L S R G +A+RGR G+LALP
Sbjct: 250 SLREVVRYLGGSGGAGGRLTRGRVQGLLEEEAAARGRLERTRLGALALP 298
Score = 45.8 bits (107), Expect = 6e-05
Identities = 58/211 (27%), Positives = 77/211 (36%), Gaps = 27/211 (12%)
Query: 63 PAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQGTI 122
P PP +++P A T S G A +A AAP P PA+ P +
Sbjct: 133 PPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPP--AV 190
Query: 123 SPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRV-GKLGKGPPPRPAPP---GTRC 178
+PP G ++ P + E + P+P + + PPP+P PP G
Sbjct: 191 APPA---------GPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVR 241
Query: 179 CPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPL 238
GA LRE G RL GR L AAA L R+R L
Sbjct: 242 AGGAARPVSLREVVRYLGGSGGAGGRLTR------GRVQGLLEEEAAARGRLERTRLGAL 295
Query: 239 PPTEFLSPRRTRP-RKHPERTRRPAQRLESG 268
PR RP R P + RP++ G
Sbjct: 296 -----ALPRGDRPGRAPPAASARPSRSKRGG 321
Score = 43.1 bits (100), Expect = 4e-04
Identities = 84/289 (29%), Positives = 103/289 (35%), Gaps = 71/289 (24%)
Query: 94 AGATETSAGNSAATAAPH------PTPASYPQGTISPP---------QLPAPRPKRFGGK 138
A A T+A S++ A+PH T S P + P P+R +
Sbjct: 13 AAAATTAAAASSSAASPHYQEWILDTIDSLRSRKARPDLERICRMVRRRHGPEPERTRAE 72
Query: 139 ------QRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAA 192
QR + R+ ++ +++ RV +G P PAPP R GA AA AA
Sbjct: 73 LEKLIQQRAVLRV-SYKGSISYRNAARVQPPRRGATP-PAPP--RAPRGAPAAA----AA 124
Query: 193 AAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADA----------LWRSRRAPL--PP 240
AA AP P P A P P AAAAAA A R APL PP
Sbjct: 125 AAPPPTPAPP---PPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPP 181
Query: 241 TEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALAPPKLSP------------P 288
+P P P R PA + P L PP P P
Sbjct: 182 PAPAAPPAVAPPAGPRRAPPPA----------VAAREPPLPPPPQPPAPPQQQQPPPPQP 231
Query: 289 FPCLAQSASRAAGARRALSASRGRRGLLGSGSLALPLPGCREPRQRLHG 337
P A RA GA R +S R L GSG G R R R+ G
Sbjct: 232 QPPPEGGAVRAGGAARPVSLREVVRYLGGSGG-----AGGRLTRGRVQG 275
>gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo
sapiens]
Length = 328
Score = 49.3 bits (116), Expect = 5e-06
Identities = 79/278 (28%), Positives = 96/278 (34%), Gaps = 63/278 (22%)
Query: 62 TPAPPRERGESSSPRG--------PTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPT 113
TP+P ++G P P L A T R +G G E G
Sbjct: 66 TPSPDPQQGSPERPFKVPGVFSTLPCL-STALTFRAGGRGRGGGEGGGGERLLFLLFRAL 124
Query: 114 --PASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGK---LGKGPP 168
P S P G P P+P R GG+ G E+ A P PR K L P
Sbjct: 125 SRPCSAPTG---PEHGWRPQPGREGGRA-------GAESETA--PPPRTNKHRRLQPEPA 172
Query: 169 PRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTRR---APGRPGCLPTAAAA 225
PRP PP PG+ L+ P P P RR A R LP A A
Sbjct: 173 PRPPPPAASFQPGS--------------ALQPP----PAPPRRDDSASLRCSVLPPARRA 214
Query: 226 AADAL--WRSRRAPLPP----------TEFLSPRRTRPRKHPERTRRPAQRLESGCRGHC 273
A AL WR LPP +E RR + + +R RR R G G
Sbjct: 215 VAAALGKWRPSSFSLPPFNLKRRENGASERAGERRGQGEEGQQRLRRLRLRRPRGPPGGA 274
Query: 274 SRGAPALAPPKLSPPFPCLAQSASRAAGARRALSASRG 311
+ A +AP + C S GAR L + G
Sbjct: 275 AAAASVMAPRRSR----CFCTSICGGRGARPQLPRTCG 308
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 48.5 bits (114), Expect = 9e-06
Identities = 72/259 (27%), Positives = 95/259 (36%), Gaps = 54/259 (20%)
Query: 61 RTPAP---PRERGESSSPRGPTLRG--RAKTTRGRSQGAGATETSAGNSAA------TAA 109
R+P P P + G L G A R R +GAG TS G + +
Sbjct: 227 RSPRPCGRPPTDSPDAGGAGRPLDGYISALLRRRRRRGAGQPRTSPGGADGGPRRQNSVR 286
Query: 110 PHPTPASYPQGTISPPQLPAPRPKRFGGKQR-PLWRIRGWETT--VARLPEPRVGKLGKG 166
P AS G+ P + P+ +R GG P R W ++ PEP
Sbjct: 287 QRPPDASPSPGSARPAREPSL--ERVGGHPTSPAALSRAWASSWESEAAPEPAA------ 338
Query: 167 PPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEP--TR-------------R 211
PP P+PP + AQ + A AA +GL AAR P TR R
Sbjct: 339 PPAAPSPPDSPAEGRLVKAQYIPGAQAATRGLPGRAARRKPPPLTRGRSVEQSPPRERPR 398
Query: 212 APGRPGCLPTAAA--------------AAADALWRSRRAPLPPTEFLSPRRTRPRKHPER 257
A GR G + A+ + L R+ P P ++ + R PR P R
Sbjct: 399 AAGRRGRMAEASGRRGSPRARKASRSQSETSLLGRASAVPSGPPKYPTAEREEPR--PPR 456
Query: 258 TRR-PAQRLESGCRGHCSR 275
RR PA L + G C R
Sbjct: 457 PRRGPAPTLAAQAAGSCRR 475
Score = 45.4 bits (106), Expect = 7e-05
Identities = 97/375 (25%), Positives = 128/375 (34%), Gaps = 82/375 (21%)
Query: 12 LEEHPSRKLGRYRSPTPLR--PAKGKTIC--TRFGDKRSSGQAGNKSERELQARTPAPPR 67
LE+ R G Y P+ + T C + F S G+ G R + A P+
Sbjct: 107 LEQESGRSSGFYEDPSSTGGPDSPPSTFCGDSGFSGSSSYGRLGPSEPRGIYASER--PK 164
Query: 68 ERGESSSPRGPTLRGRAKTTRGRSQ-------GAGATETSAGNSAATAAPHPTPASYPQG 120
G++S + RA R S AG S+ A A P TP+
Sbjct: 165 SLGDASPSAPEVVGARAAVPRSFSAPYPTAGGSAGPEACSSAERRARAGPFLTPSPLHAV 224
Query: 121 TISPPQLPAPRPKR----FGGKQRPLWRIRGWETTVAR------LPEPRVGKLGKGPPPR 170
+ P+ P RP GG RPL G+ + + R +PR G PR
Sbjct: 225 AMRSPR-PCGRPPTDSPDAGGAGRPL---DGYISALLRRRRRRGAGQPRTSPGGADGGPR 280
Query: 171 ------PAPPGTRCCPG----ARAAQLLR-------------------EAAAAAQGLRAP 201
PP PG AR L R E+ AA + P
Sbjct: 281 RQNSVRQRPPDASPSPGSARPAREPSLERVGGHPTSPAALSRAWASSWESEAAPEPAAPP 340
Query: 202 AARLPEPTRRAPGR---PGCLPTAAAAAADALWRS-RRAPLPPTEFLSPRRTRPRKHPER 257
AA P P A GR +P A AA R+ RR P P T S ++ PR+ P
Sbjct: 341 AAPSP-PDSPAEGRLVKAQYIPGAQAATRGLPGRAARRKPPPLTRGRSVEQSPPRERPRA 399
Query: 258 TRRPAQRLESGCRGHCSRGAPALAPPKLSPPFPCLAQSASRAAGARRALSASRGRRGLLG 317
R + E+ R RG+P A+ ASR+ L GR +
Sbjct: 400 AGRRGRMAEASGR----RGSPR-------------ARKASRSQSETSLL----GRASAVP 438
Query: 318 SGSLALPLPGCREPR 332
SG P EPR
Sbjct: 439 SGPPKYPTAEREEPR 453
Score = 42.7 bits (99), Expect = 5e-04
Identities = 58/221 (26%), Positives = 78/221 (35%), Gaps = 40/221 (18%)
Query: 28 PLRPAKGKTICTRFGDKRSSGQAGNKSERELQARTPAPPRERGESSSPRGPTLRGRAKTT 87
P PA+G+ + ++ QA + AR PP RG S P R RA
Sbjct: 346 PDSPAEGRLVKAQY---IPGAQAATRGLPGRAARRKPPPLTRGRSVEQSPPRERPRAAGR 402
Query: 88 RGRSQGAGATETSAGNSAATAAPHPTP-----ASYPQGTISPPQLPAPRPKRFGGKQRPL 142
RGR A S A+ + T ++ P G PP+ P
Sbjct: 403 RGRMAEASGRRGSPRARKASRSQSETSLLGRASAVPSG---PPKYPT------------- 446
Query: 143 WRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPA 202
A EPR + +GP P A C R+ + A RAPA
Sbjct: 447 ----------AEREEPRPPRPRRGPAPTLAAQAAGSCRRWRSTAEIDAADGRRVRPRAPA 496
Query: 203 ARL--PEPTRRAPGRP---GCLPTAAAAAADALW-RSRRAP 237
AR+ P P+ AP R GC + + +A L RR P
Sbjct: 497 ARVPGPGPSPSAPQRRLLYGCAGSDSECSAGRLGPLGRRGP 537
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 48.1 bits (113), Expect = 1e-05
Identities = 79/275 (28%), Positives = 102/275 (37%), Gaps = 51/275 (18%)
Query: 82 GRAKTTRGRS----QGAGATETSAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGG 137
G + TR R +G + E++AG + APHP + P + P PR + G
Sbjct: 42 GTCRLTRSRKSRLERGTFSPESAAGTEVS-GAPHPDSRTRPAA-----RPPHPRTRSPPG 95
Query: 138 KQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTR-CCPGARAAQLLREAAAAAQ 196
+ G TT + +P PR + G RPA PG R C ARA+ A AA Q
Sbjct: 96 RS-------GSGTTFSAVP-PRPSQHQSGSRLRPAAPGPRPGCSSARAS----PAPAAPQ 143
Query: 197 GLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWR--SRRAPLPPTEFLSPRRTRPRKH 254
AA P R A G G P + +D + SR PP R PR+
Sbjct: 144 -----AAARTAPGRAASGGSG--PGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRS 196
Query: 255 PERTRRPAQRLES---------GCRGHCSRGAPALAPPKL-SPPFPCLAQSASRAAGARR 304
RRP L+S C S G P A S F + G
Sbjct: 197 ARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGAL 256
Query: 305 ALSASRGRRGLLGSGSLALPLPGCR-----EPRQR 334
+ GRR G G+ PGCR PR+R
Sbjct: 257 RVRGCGGRRRSNGQGT----QPGCRLLSPAPPRRR 287
Score = 30.4 bits (67), Expect = 2.4
Identities = 80/309 (25%), Positives = 106/309 (34%), Gaps = 64/309 (20%)
Query: 5 SGSDPQVLEEHPSRKLGRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQARTPA 64
S + P HP R RSP P R G T + + S Q+G++ L+ P
Sbjct: 77 SRTRPAARPPHP-----RTRSP-PGRSGSGTTF-SAVPPRPSQHQSGSR----LRPAAPG 125
Query: 65 P-PRERGESSSPRGPTLRGRAKTTRGR---------SQGAGATETSAGNSAATAAPHPTP 114
P P +SP + A+T GR S+G G+ + A S A P P
Sbjct: 126 PRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLT 185
Query: 115 A----SYPQGTISP---PQLP-APRP-KRFGGKQRPLWRIRGWETTVARLPEPRVGKLGK 165
+ P+ + P P LP RP G + W G T A P
Sbjct: 186 CRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAA-ASSPSADFSSD 244
Query: 166 GPPPRPAPPG---TRCCPGARAAQLLREAAAAAQGLRAPAARL--PEPTRRAPGRPGCLP 220
P P G R C G R + QG + P RL P P RR +P L
Sbjct: 245 SPQPIIIFGGALRVRGCGGRRRSN--------GQGTQ-PGCRLLSPAPPRRRYRKPLTLS 295
Query: 221 TAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPAL 280
++ P ++PRR PR P R +G R H AP
Sbjct: 296 FGGGVSS-----------PTHPVVAPRRHFPRSVP--------RFPAGFRTHSLGTAPKP 336
Query: 281 APPKLSPPF 289
K S P+
Sbjct: 337 KCWKHSQPW 345
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 48.1 bits (113), Expect = 1e-05
Identities = 79/275 (28%), Positives = 102/275 (37%), Gaps = 51/275 (18%)
Query: 82 GRAKTTRGRS----QGAGATETSAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGG 137
G + TR R +G + E++AG + APHP + P + P PR + G
Sbjct: 42 GTCRLTRSRKSRLERGTFSPESAAGTEVS-GAPHPDSRTRPAA-----RPPHPRTRSPPG 95
Query: 138 KQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTR-CCPGARAAQLLREAAAAAQ 196
+ G TT + +P PR + G RPA PG R C ARA+ A AA Q
Sbjct: 96 RS-------GSGTTFSAVP-PRPSQHQSGSRLRPAAPGPRPGCSSARAS----PAPAAPQ 143
Query: 197 GLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWR--SRRAPLPPTEFLSPRRTRPRKH 254
AA P R A G G P + +D + SR PP R PR+
Sbjct: 144 -----AAARTAPGRAASGGSG--PGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRS 196
Query: 255 PERTRRPAQRLES---------GCRGHCSRGAPALAPPKL-SPPFPCLAQSASRAAGARR 304
RRP L+S C S G P A S F + G
Sbjct: 197 ARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGAL 256
Query: 305 ALSASRGRRGLLGSGSLALPLPGCR-----EPRQR 334
+ GRR G G+ PGCR PR+R
Sbjct: 257 RVRGCGGRRRSNGQGT----QPGCRLLSPAPPRRR 287
Score = 30.4 bits (67), Expect = 2.4
Identities = 80/309 (25%), Positives = 106/309 (34%), Gaps = 64/309 (20%)
Query: 5 SGSDPQVLEEHPSRKLGRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQARTPA 64
S + P HP R RSP P R G T + + S Q+G++ L+ P
Sbjct: 77 SRTRPAARPPHP-----RTRSP-PGRSGSGTTF-SAVPPRPSQHQSGSR----LRPAAPG 125
Query: 65 P-PRERGESSSPRGPTLRGRAKTTRGR---------SQGAGATETSAGNSAATAAPHPTP 114
P P +SP + A+T GR S+G G+ + A S A P P
Sbjct: 126 PRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLT 185
Query: 115 A----SYPQGTISP---PQLP-APRP-KRFGGKQRPLWRIRGWETTVARLPEPRVGKLGK 165
+ P+ + P P LP RP G + W G T A P
Sbjct: 186 CRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAA-ASSPSADFSSD 244
Query: 166 GPPPRPAPPG---TRCCPGARAAQLLREAAAAAQGLRAPAARL--PEPTRRAPGRPGCLP 220
P P G R C G R + QG + P RL P P RR +P L
Sbjct: 245 SPQPIIIFGGALRVRGCGGRRRSN--------GQGTQ-PGCRLLSPAPPRRRYRKPLTLS 295
Query: 221 TAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPAL 280
++ P ++PRR PR P R +G R H AP
Sbjct: 296 FGGGVSS-----------PTHPVVAPRRHFPRSVP--------RFPAGFRTHSLGTAPKP 336
Query: 281 APPKLSPPF 289
K S P+
Sbjct: 337 KCWKHSQPW 345
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 48.1 bits (113), Expect = 1e-05
Identities = 79/275 (28%), Positives = 102/275 (37%), Gaps = 51/275 (18%)
Query: 82 GRAKTTRGRS----QGAGATETSAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGG 137
G + TR R +G + E++AG + APHP + P + P PR + G
Sbjct: 42 GTCRLTRSRKSRLERGTFSPESAAGTEVS-GAPHPDSRTRPAA-----RPPHPRTRSPPG 95
Query: 138 KQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTR-CCPGARAAQLLREAAAAAQ 196
+ G TT + +P PR + G RPA PG R C ARA+ A AA Q
Sbjct: 96 RS-------GSGTTFSAVP-PRPSQHQSGSRLRPAAPGPRPGCSSARAS----PAPAAPQ 143
Query: 197 GLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWR--SRRAPLPPTEFLSPRRTRPRKH 254
AA P R A G G P + +D + SR PP R PR+
Sbjct: 144 -----AAARTAPGRAASGGSG--PGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRS 196
Query: 255 PERTRRPAQRLES---------GCRGHCSRGAPALAPPKL-SPPFPCLAQSASRAAGARR 304
RRP L+S C S G P A S F + G
Sbjct: 197 ARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGAL 256
Query: 305 ALSASRGRRGLLGSGSLALPLPGCR-----EPRQR 334
+ GRR G G+ PGCR PR+R
Sbjct: 257 RVRGCGGRRRSNGQGT----QPGCRLLSPAPPRRR 287
Score = 30.4 bits (67), Expect = 2.4
Identities = 80/309 (25%), Positives = 106/309 (34%), Gaps = 64/309 (20%)
Query: 5 SGSDPQVLEEHPSRKLGRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQARTPA 64
S + P HP R RSP P R G T + + S Q+G++ L+ P
Sbjct: 77 SRTRPAARPPHP-----RTRSP-PGRSGSGTTF-SAVPPRPSQHQSGSR----LRPAAPG 125
Query: 65 P-PRERGESSSPRGPTLRGRAKTTRGR---------SQGAGATETSAGNSAATAAPHPTP 114
P P +SP + A+T GR S+G G+ + A S A P P
Sbjct: 126 PRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLT 185
Query: 115 A----SYPQGTISP---PQLP-APRP-KRFGGKQRPLWRIRGWETTVARLPEPRVGKLGK 165
+ P+ + P P LP RP G + W G T A P
Sbjct: 186 CRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAA-ASSPSADFSSD 244
Query: 166 GPPPRPAPPG---TRCCPGARAAQLLREAAAAAQGLRAPAARL--PEPTRRAPGRPGCLP 220
P P G R C G R + QG + P RL P P RR +P L
Sbjct: 245 SPQPIIIFGGALRVRGCGGRRRSN--------GQGTQ-PGCRLLSPAPPRRRYRKPLTLS 295
Query: 221 TAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPAL 280
++ P ++PRR PR P R +G R H AP
Sbjct: 296 FGGGVSS-----------PTHPVVAPRRHFPRSVP--------RFPAGFRTHSLGTAPKP 336
Query: 281 APPKLSPPF 289
K S P+
Sbjct: 337 KCWKHSQPW 345
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 47.8 bits (112), Expect = 1e-05
Identities = 57/211 (27%), Positives = 78/211 (36%), Gaps = 30/211 (14%)
Query: 61 RTPAPPRERGE------SSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTP 114
R PP G+ +SSP P+ T GA E + G + A P P
Sbjct: 7 RGAPPPTMTGDLQPRQVASSPGHPSQPPLEDNTPATRTTKGARE-AGGQAQAMELPEAQP 65
Query: 115 ASYPQGTISPPQL----PAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPR 170
G + PP L P+ P + G Q P R + + P G+ +G PP+
Sbjct: 66 RQARDGELKPPSLRGQAPSSTPGKRGSPQTPPGR------SPLQAPSRLAGR-AEGSPPQ 118
Query: 171 PAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPE------PTRRAPGRPGCLPTAAA 224
R G +++ + + AA+LPE P AP RPG T A
Sbjct: 119 ------RYILGIASSRTKPTLDETPENPQLEAAQLPEVDTPQGPGTGAPLRPGLPRTEAQ 172
Query: 225 AAADALWRSRRAPLPPTEFLSPRRTRPRKHP 255
AA+ L R PP+ F S T P P
Sbjct: 173 PAAEELGFHRCFQEPPSSFTSTNYTSPSATP 203
Score = 41.2 bits (95), Expect = 0.001
Identities = 59/222 (26%), Positives = 74/222 (33%), Gaps = 91/222 (40%)
Query: 71 ESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQGTISPPQLPAP 130
E S PRGP+ ++ AG + + AP P PA+ P PQ P P
Sbjct: 872 EPSGPRGPS-------------SGHPLKSKAGVTPESKAPPPLPAATPD-----PQTPRP 913
Query: 131 RPKRFGGKQRPLWRIRGWETTVARLP----EPRVGK------------------------ 162
+ + RP R G T A P + R GK
Sbjct: 914 GDRGCPARGRPKTRSLGLAPTEADAPSQGRQQRRGKQLKLFRKDLDSGGAAEGSGSGGGG 973
Query: 163 ------------LGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTR 210
LG+ PPPRP P T+ PG+RA R AAA LPE TR
Sbjct: 974 RASGLRPRRNDGLGERPPPRPRRPRTQ-APGSRADPAPRVPRAAA---------LPEETR 1023
Query: 211 RAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPR 252
SRR LPP + PR+ + R
Sbjct: 1024 ---------------------SSRRRRLPPRK--DPRKRKAR 1042
Score = 37.0 bits (84), Expect = 0.026
Identities = 44/160 (27%), Positives = 58/160 (36%), Gaps = 19/160 (11%)
Query: 65 PPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGN-SAATAAPHPTPASYPQGTIS 123
PP + S RGP + G++ A +TS G AAP P PA PQ
Sbjct: 384 PPSAQDGLGSTRGPPSSLPQRHFPGQAYRASGVDTSPGPPDTELAAPGPPPARLPQ-LWD 442
Query: 124 PPQLPAPRPKR----------FGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAP 173
P P P P F G+ P R+ ++ A LP P+V P RP+P
Sbjct: 443 PTAAPYPTPPGGPLAATRSMFFNGQPSPGQRLCLPQS--APLPWPQV-----LPTARPSP 495
Query: 174 PGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAP 213
G E +QG A + P P + P
Sbjct: 496 HGMEMLSRLPFPAGGPEWQGGSQGALGTAGKTPGPREKLP 535
Score = 35.4 bits (80), Expect = 0.076
Identities = 63/249 (25%), Positives = 85/249 (34%), Gaps = 39/249 (15%)
Query: 31 PAKGKTICTRF--GDKRSSGQAGNKSERELQARTPA-----PPRERGESSSPRGPTLRGR 83
P + T TR G + + GQA E Q R PP RG++ S P RG
Sbjct: 34 PLEDNTPATRTTKGAREAGGQAQAMELPEAQPRQARDGELKPPSLRGQAPSST-PGKRGS 92
Query: 84 AKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLW 143
+T GRS A + A A P Y G S +P + P
Sbjct: 93 PQTPPGRSP------LQAPSRLAGRAEGSPPQRYILGIASS----RTKPTLDETPENP-- 140
Query: 144 RIRGWETTVARLPEPRVGK-LGKGPPPRPAPPGTRCCPGARAAQLLR------------E 190
+ A+LPE + G G P RP P T P A R
Sbjct: 141 -----QLEAAQLPEVDTPQGPGTGAPLRPGLPRTEAQPAAEELGFHRCFQEPPSSFTSTN 195
Query: 191 AAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTR 250
+ + R PA P+ +P +PG P A+ AD+ + P F P
Sbjct: 196 YTSPSATPRPPAPGPPQSRGTSPLQPGSYPEYQASGADSWPPAAENSFPGANFGVP-PAE 254
Query: 251 PRKHPERTR 259
P P+ +R
Sbjct: 255 PEPIPKGSR 263
Score = 32.7 bits (73), Expect = 0.49
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 63 PAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGAT-ETSAGNSAATAAPHPTPASYPQGT 121
PA P+ + GP+ +G G G G+ + ++G + A P S+P +
Sbjct: 3693 PATPKAKP------GPSSQGSGSPRPGTKTGGGSQPQPASGQLQSETATTPAKPSFPSRS 3746
Query: 122 ISPPQLPA-------PRPKRFGGKQRPLWRI----RGWETT---VARLPEP----RVGKL 163
+P +LPA + R G+Q P + +G +T ++P P VG
Sbjct: 3747 PAPERLPARAQAKSCTKGPREAGEQGPHGSLGPKEKGESSTKRKKGQVPGPARSESVGSF 3806
Query: 164 GKGPPPRPAPPGT 176
G+ P PP T
Sbjct: 3807 GRAPSAPDKPPRT 3819
>gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]
Length = 659
Score = 47.8 bits (112), Expect = 1e-05
Identities = 47/123 (38%), Positives = 52/123 (42%), Gaps = 21/123 (17%)
Query: 101 AGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRV 160
+G+SAA A PA PQ PP P P P GG + + G L R+
Sbjct: 3 SGSSAALALA-AAPAPLPQPPPPPPPPPPPLPPPSGGPE-----LEG----DGLLLRERL 52
Query: 161 GKLGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLP 220
LG P PA PG A LR AAAAQG AA L R PGRPG P
Sbjct: 53 AALGLDDPS-PAEPG---------APALRAPAAAAQGQARRAAELSPEERAPPGRPGA-P 101
Query: 221 TAA 223
AA
Sbjct: 102 EAA 104
Score = 34.7 bits (78), Expect = 0.13
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 167 PPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAA 226
PPP P PP P + +L + + R A L +P+ PG P AAAA
Sbjct: 21 PPPPPPPPPPPLPPPSGGPELEGDGLLLRE--RLAALGLDDPSPAEPGAPALRAPAAAAQ 78
Query: 227 ADALWRSRRAPLPPTEFLSPRR 248
A R A L P E P R
Sbjct: 79 GQA---RRAAELSPEERAPPGR 97
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 47.8 bits (112), Expect = 1e-05
Identities = 70/280 (25%), Positives = 105/280 (37%), Gaps = 45/280 (16%)
Query: 47 SGQAGNKSERELQARTPAP-PRERGESSSPRGPTLRGRA-KTTRGRSQGAGATETSAGNS 104
+G+ G + R +R+ +P PR+R + +SPRG R + TR R + A +
Sbjct: 514 NGEVGRR-RRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRT 572
Query: 105 AATAAPHPTPASYPQGTISPPQLPAPRPKRFGGK-QRPLWRIRGWETTVARLPEPRVGKL 163
PTP + PP+ +P P+R+ QR + A P P +
Sbjct: 573 -------PTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRA 625
Query: 164 GKGPPPR-----PAPPGTRCCP---------------GARAAQLLREAAAAAQGLRAPAA 203
PPP+ PP R P G+ ++ REA + R
Sbjct: 626 SPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKR---- 681
Query: 204 RLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQ 263
P P RAP P A+ + R R++P P T + RR P++ ++ A
Sbjct: 682 HSPSPRPRAPQTSSSPPPVRRGASSSPQR-RQSPSPSTRPI--RRVSRTPEPKKIKKAAS 738
Query: 264 ------RLESGCRGHCSRGAPALAPPKLSPPFPCLAQSAS 297
R S R PA P +PP P +QS S
Sbjct: 739 PSPQSVRRVSSSRSVSGSPEPAAKKPP-APPSPVQSQSPS 777
Score = 45.4 bits (106), Expect = 7e-05
Identities = 65/270 (24%), Positives = 96/270 (35%), Gaps = 29/270 (10%)
Query: 43 DKRSSGQAGNKSERELQARTPAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAG 102
DK + +S RE + R+ +P R + S SPR + R + R S+
Sbjct: 150 DKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSP-------- 201
Query: 103 NSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGK 162
T + P+PA P+ P+LP P K + P + + + ++P+P
Sbjct: 202 -RHRTKSRSPSPA--PEKKEKTPELPEPSVK----VKEPSVQEATSTSDILKVPKPEPIP 254
Query: 163 LGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGR---PGCL 219
K P P + R R + + R+P+ P R+ R P
Sbjct: 255 EPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRR 314
Query: 220 PTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRG--- 276
P+ S R PP P R R + P R RR + SG S
Sbjct: 315 PSPRRRP------SPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSR 368
Query: 277 APALAPPK--LSPPFPCLAQSASRAAGARR 304
+P PPK SPP S S + RR
Sbjct: 369 SPPKKPPKRTSSPPRKTRRLSPSASPPRRR 398
Score = 31.6 bits (70), Expect = 1.1
Identities = 39/175 (22%), Positives = 58/175 (33%), Gaps = 22/175 (12%)
Query: 16 PSRKLGRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQARTPAPPRERGESSSP 75
P R++ P K K G + ++S RE AR+P P + S P
Sbjct: 631 PKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTRE--ARSPQPNKRHSPSPRP 688
Query: 76 RG--------PTLRGRAKTTRGRSQGAGATETSAGNSAA--------TAAPHPTPASYPQ 119
R P RG + + + R + +T S A+P P
Sbjct: 689 RAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVS 748
Query: 120 GTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPP 174
+ S P P K+ P ++ + P V K K P P P+PP
Sbjct: 749 SSRSVSGSPEPAAKKPPAPPSP---VQSQSPSTNWSPAVPV-KKAKSPTPSPSPP 799
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 47.4 bits (111), Expect = 2e-05
Identities = 63/197 (31%), Positives = 83/197 (42%), Gaps = 36/197 (18%)
Query: 82 GRAKTTRGRS----QGAGATETSAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGG 137
G + TR R +G + E++AG + APHP + P + P PR + G
Sbjct: 42 GTCRLTRSRKSRLERGTFSPESAAGTEVS-GAPHPDSRTRPAA-----RPPHPRTRSPPG 95
Query: 138 KQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTR-CCPGARAAQLLREAAAAAQ 196
+ G TT + +P PR + G RPA PG R C ARA+ A AA Q
Sbjct: 96 RS-------GSGTTFSAVP-PRPSQHQSGSRLRPAAPGPRPGCSSARAS----PAPAAPQ 143
Query: 197 GLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWR--SRRAPLPPTEFLSPRRTRPRKH 254
AA P R A G G P + +D + SR PP L+ RR R
Sbjct: 144 -----AAARTAPGRAASGGSG--PGSRGQGSDQVGARPSRAGGQPPP--LTCRRCRAA-- 192
Query: 255 PERTRRPAQRLESGCRG 271
P R+ RP +R CRG
Sbjct: 193 PRRSARPFRRPGLPCRG 209
>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
sapiens]
Length = 177
Score = 47.0 bits (110), Expect = 3e-05
Identities = 44/112 (39%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 163 LGKGPPPRPA--PPG---TRCCPGARAAQLLREAAAAAQGLRAPAARLPEPT--RRAPGR 215
LG GP PR P G R PG RA L AA L A+ P P RRAP R
Sbjct: 29 LGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCRRAPPR 88
Query: 216 PGCLPTAAAAAADALWRSRRAPLPPTEF-LSPRRTRPRKHPERTRRPAQRLE 266
P +P AA WR R P P + +P R RP P R+ PA+R E
Sbjct: 89 P--VPGAAR------WRGRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRRE 132
>gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo
sapiens]
Length = 334
Score = 47.0 bits (110), Expect = 3e-05
Identities = 94/341 (27%), Positives = 122/341 (35%), Gaps = 82/341 (24%)
Query: 33 KGKTICTRFGDK-----RSSGQAGNKSERELQARTPAPP---RERGESSSPRGPTLRGRA 84
K KT C R D R S Q G++ +A AP +E+G++S PT R
Sbjct: 8 KNKTTCLRGSDTAGVTCRVSSQDGDRRGLGREAAPGAPAEGEKEKGKNSRRPRPTC-SRG 66
Query: 85 KTTRGR-SQGAGATETSAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLW 143
+T RGR +GA E AG A P P A+ + + R L
Sbjct: 67 RTERGRVERGADHQERPAG--APAHRPVPAAAAILRAAV----------------HRVLR 108
Query: 144 RIRGWETTVARLPEPRVGKLGKGP----PPRPAPPGTRCCPGARAAQLLREAAAAAQGLR 199
+R A + + G +GP PPR G R G +A L GLR
Sbjct: 109 VLRA----AAAVRDAERGLRREGPRRHAPPRKQLRGRRGAAGLVSAGHLGREPPRGGGLR 164
Query: 200 APAARLPEPT--------RRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRP 251
PA +P P R P C + AA L RP
Sbjct: 165 PPAL-VPVPLATPLLLEGRSEPSTRACAVSGGQAA-----------------LLGAHVRP 206
Query: 252 RKHPERTRRPAQRLE-----SGCRGHCSRGAPALAPPKLSPPFPCLAQSASRAAGARRAL 306
P+R R A R + +G RG +G A A P+ P + A GARRAL
Sbjct: 207 A--PDRAARCAPRAKKAGANAGARG---QGRGAAAGPERPPHVQGRRPAPRGAVGARRAL 261
Query: 307 SASRGRRGLLGSGSLALPLPGCREPRQRLHGSDGAAGA-RC 346
+ G+ G L RE R+R AAG RC
Sbjct: 262 LGAVGKAG---------GLTRARETRRRGEEGVPAAGTPRC 293
>gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo
sapiens]
Length = 398
Score = 47.0 bits (110), Expect = 3e-05
Identities = 83/300 (27%), Positives = 105/300 (35%), Gaps = 50/300 (16%)
Query: 29 LRPAKGKTICTRFG------DKRSSGQAGNKSERELQARTPAPPRERGESSSPRGPTLRG 82
LR ++ + TR G +R+ A S R PA + + G LRG
Sbjct: 78 LRKSRARLPRTRQGREDAGVGRRNRDPAEPGSLRPTSLGFPARAGQGRVQGAAPGRKLRG 137
Query: 83 RAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYP--QGTISPPQLPAPRPKRFGGKQR 140
KT GRS +G + AG+ AA AA H A + G P +LP P G R
Sbjct: 138 EPKTPPGRSGPSGGVRSGAGHRAA-AAEHQLGAGFSVRNGPGPPARLPPAPP---GPLLR 193
Query: 141 PLWRIRGWETTVARLP--EPRVGKLGKGPPPRP---------APPGTRCCPGARAAQLLR 189
P R + P EP KL PPP P PP R L
Sbjct: 194 PARPPRPYFPRPRTPPTCEPPSRKL---PPPLPLCRSRWVLAPPPPVRPRLRVLTPPLAL 250
Query: 190 EAAAAAQGLRAPAAR----------------LPEPTRRAPGRPGCLPTAAAAAADALWRS 233
A +G R P+ R L +RRA G AA A +
Sbjct: 251 RCALPERGSRTPSTRSAVLSGRVAGLGTELTLTPSSRRAHGSHALSSERQAAPTRAFCSA 310
Query: 234 RRAPLPPTEFLSPRRTRPRKHPERTRRPAQRLESGCRGHCSRGAPALAPPKLSP-PFPCL 292
P PP+ P P+ + R+P RL R +RGAP P P P P L
Sbjct: 311 DPLPRPPS--FVPSLPSPQAQGQAVRQP--RL---LRAALARGAPRGRTPSPRPGPAPAL 363
Score = 33.5 bits (75), Expect = 0.29
Identities = 51/199 (25%), Positives = 63/199 (31%), Gaps = 27/199 (13%)
Query: 141 PLWRIRGWETTVARLPEPRVGK---LGKGPPPRPAPPGTRCCPGARAAQLLREAAAAAQG 197
P+ R R ARL V LG PP R P +R PG + A
Sbjct: 3 PVGRSRSENADTARLFGTAVYTFEVLGALPPDRSPTPRSRVSPGVTSL-----AVGPGNP 57
Query: 198 LRAPAARLPEPTRRAPGRPGC---------LPTAAAAAADA-LWRSRRAPLPPTEFLSPR 247
R + +P PG PG LP DA + R R P P
Sbjct: 58 TRCQRSGVPY---EGPGAPGGQQLRKSRARLPRTRQGREDAGVGRRNRDPAEPGSL---- 110
Query: 248 RTRPRKHPERTRRPAQRLESGCRGHCSRGAPALAPPKLSPPFPCLAQSASRAAGARRALS 307
RP R R++ G RG P P + P + + RAA A L
Sbjct: 111 --RPTSLGFPARAGQGRVQGAAPGRKLRGEPKTPPGRSGPSGGVRSGAGHRAAAAEHQLG 168
Query: 308 ASRGRRGLLGSGSLALPLP 326
A R G + P P
Sbjct: 169 AGFSVRNGPGPPARLPPAP 187
>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
sapiens]
Length = 177
Score = 47.0 bits (110), Expect = 3e-05
Identities = 44/112 (39%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 163 LGKGPPPRPA--PPG---TRCCPGARAAQLLREAAAAAQGLRAPAARLPEPT--RRAPGR 215
LG GP PR P G R PG RA L AA L A+ P P RRAP R
Sbjct: 29 LGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVSCRRAPPR 88
Query: 216 PGCLPTAAAAAADALWRSRRAPLPPTEF-LSPRRTRPRKHPERTRRPAQRLE 266
P +P AA WR R P P + +P R RP P R+ PA+R E
Sbjct: 89 P--VPGAAR------WRGRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRRE 132
>gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo
sapiens]
Length = 329
Score = 47.0 bits (110), Expect = 3e-05
Identities = 94/341 (27%), Positives = 122/341 (35%), Gaps = 82/341 (24%)
Query: 33 KGKTICTRFGDK-----RSSGQAGNKSERELQARTPAPP---RERGESSSPRGPTLRGRA 84
K KT C R D R S Q G++ +A AP +E+G++S PT R
Sbjct: 3 KNKTTCLRGSDTAGVTCRVSSQDGDRRGLGREAAPGAPAEGEKEKGKNSRRPRPTC-SRG 61
Query: 85 KTTRGR-SQGAGATETSAGNSAATAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLW 143
+T RGR +GA E AG A P P A+ + + R L
Sbjct: 62 RTERGRVERGADHQERPAG--APAHRPVPAAAAILRAAV----------------HRVLR 103
Query: 144 RIRGWETTVARLPEPRVGKLGKGP----PPRPAPPGTRCCPGARAAQLLREAAAAAQGLR 199
+R A + + G +GP PPR G R G +A L GLR
Sbjct: 104 VLRA----AAAVRDAERGLRREGPRRHAPPRKQLRGRRGAAGLVSAGHLGREPPRGGGLR 159
Query: 200 APAARLPEPT--------RRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRP 251
PA +P P R P C + AA L RP
Sbjct: 160 PPAL-VPVPLATPLLLEGRSEPSTRACAVSGGQAA-----------------LLGAHVRP 201
Query: 252 RKHPERTRRPAQRLE-----SGCRGHCSRGAPALAPPKLSPPFPCLAQSASRAAGARRAL 306
P+R R A R + +G RG +G A A P+ P + A GARRAL
Sbjct: 202 A--PDRAARCAPRAKKAGANAGARG---QGRGAAAGPERPPHVQGRRPAPRGAVGARRAL 256
Query: 307 SASRGRRGLLGSGSLALPLPGCREPRQRLHGSDGAAGA-RC 346
+ G+ G L RE R+R AAG RC
Sbjct: 257 LGAVGKAG---------GLTRARETRRRGEEGVPAAGTPRC 288
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,009,086
Number of Sequences: 37866
Number of extensions: 1298255
Number of successful extensions: 15047
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 1588
Number of HSP's that attempted gapping in prelim test: 9955
Number of HSP's gapped (non-prelim): 5229
length of query: 346
length of database: 18,247,518
effective HSP length: 103
effective length of query: 243
effective length of database: 14,347,320
effective search space: 3486398760
effective search space used: 3486398760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.