Guide to the Human Genome
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Name: LOC100289602 Sequence: fasta or formatted (329aa) NCBI GI: 239743103
Description:

PREDICTED: hypothetical protein XP_002342755

Not currently referenced in the text

Other entries for this name:
alt mRNA {329aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.9         59           4
 C cysteine            1.8          6           1
 D aspartate           2.1          7           1
 E glutamate           5.2         17           2
 F phenylalanine       0.3          1           1
 G glycine            14.0         46           3
 H histidine           2.4          8           1
 I isoleucine          0.3          1           1
 K lysine              2.7          9           2
 L leucine             8.5         28           3
 M methionine          0.3          1           1
 N asparagine          0.9          3           1
 P proline            10.0         33           2
 Q glutamine           2.7          9           2
 R arginine           16.7         55           3
 S serine              3.3         11           2
 T threonine           4.0         13           2
 V valine              6.7         22           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342755 
LOC100289716          1.000   PREDICTED: hypothetical protein XP_002346898 
LOC100289602          1.000   PREDICTED: hypothetical protein 
LOC100293812          0.986   PREDICTED: hypothetical protein 
C2orf55               0.055   hypothetical protein LOC343990 
LOC728767             0.047   PREDICTED: hypothetical protein 
LOC728767             0.047   PREDICTED: hypothetical protein 
LOC100293596          0.043   PREDICTED: similar to mucin 
LOC100292370          0.040   PREDICTED: hypothetical protein 
IRF2BP2               0.038   interferon regulatory factor 2 binding protein 2 is...
IRF2BP2               0.038   interferon regulatory factor 2 binding protein 2 is...
LOC100291634          0.036   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.036   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.036   PREDICTED: hypothetical protein 
LOC643355             0.036   PREDICTED: hypothetical protein 
LOC100129571          0.035   PREDICTED: similar to hCG1646049 
LOC100129571          0.035   PREDICTED: similar to hCG1646049 
LOC100129571          0.035   PREDICTED: similar to hCG1646049 
SYN1                  0.035   synapsin I isoform Ia 
SYN1                  0.035   synapsin I isoform Ib 
COL1A1                0.033   alpha 1 type I collagen preproprotein 
LOC100288496          0.033   PREDICTED: hypothetical protein XP_002342747 
FLJ37078              0.033   hypothetical protein LOC222183 
LOC100291624          0.032   PREDICTED: hypothetical protein XP_002345876 
LOC100294444          0.032   PREDICTED: similar to family with sequence similari...
LOC100289712          0.032   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.032   PREDICTED: hypothetical protein XP_002342583 
FAM48B2               0.032   family with sequence similarity 48, member B2 [Homo...
ZNF579                0.032   zinc finger protein 579 
LOC100292745          0.030   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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