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Search of human proteins with 239753541
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753541 PREDICTED: hypothetical protein XP_002345692 [Homo
sapiens]
(202 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753541 PREDICTED: hypothetical protein XP_002345692 [Homo ... 425 e-119
gi|239748121 PREDICTED: hypothetical protein XP_002346534 [Homo ... 425 e-119
gi|239742020 PREDICTED: hypothetical protein XP_002342373 [Homo ... 422 e-119
gi|18079216 CASK interacting protein 1 [Homo sapiens] 38 0.005
gi|61676082 shadow of prion protein [Homo sapiens] 38 0.005
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 37 0.015
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 36 0.019
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 36 0.019
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 36 0.019
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 36 0.025
gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo sap... 36 0.025
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 36 0.025
gi|27369497 carbohydrate (N-acetylglucosamine-6-O) sulfotransfer... 35 0.033
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 35 0.033
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 35 0.033
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 35 0.033
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 35 0.033
gi|48762934 alpha 2 type I collagen [Homo sapiens] 35 0.043
gi|239753500 PREDICTED: hypothetical protein [Homo sapiens] 35 0.043
gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo ... 35 0.043
gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo ... 35 0.043
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 35 0.057
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 35 0.057
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 35 0.057
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 35 0.057
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 34 0.074
gi|24497554 homeobox A13 [Homo sapiens] 34 0.074
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 34 0.074
gi|239508745 PREDICTED: hypothetical protein [Homo sapiens] 34 0.074
gi|110832843 TBP-associated factor 4 [Homo sapiens] 34 0.074
>gi|239753541 PREDICTED: hypothetical protein XP_002345692 [Homo
sapiens]
Length = 202
Score = 425 bits (1092), Expect = e-119
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MFLRILQLSPDSVQSSHIPQLTPKGLQLLLQLPQPLRMFIGVPLNQPQGLRPTTLSCIHL 60
MFLRILQLSPDSVQSSHIPQLTPKGLQLLLQLPQPLRMFIGVPLNQPQGLRPTTLSCIHL
Sbjct: 1 MFLRILQLSPDSVQSSHIPQLTPKGLQLLLQLPQPLRMFIGVPLNQPQGLRPTTLSCIHL 60
Query: 61 GGLQQGLPTPRRLSAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHRPPSGPARSWAC 120
GGLQQGLPTPRRLSAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHRPPSGPARSWAC
Sbjct: 61 GGLQQGLPTPRRLSAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHRPPSGPARSWAC 120
Query: 121 GARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNPATR 180
GARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNPATR
Sbjct: 121 GARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNPATR 180
Query: 181 SRSLLRRRCPCCACSVFFARRE 202
SRSLLRRRCPCCACSVFFARRE
Sbjct: 181 SRSLLRRRCPCCACSVFFARRE 202
>gi|239748121 PREDICTED: hypothetical protein XP_002346534 [Homo
sapiens]
Length = 202
Score = 425 bits (1092), Expect = e-119
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MFLRILQLSPDSVQSSHIPQLTPKGLQLLLQLPQPLRMFIGVPLNQPQGLRPTTLSCIHL 60
MFLRILQLSPDSVQSSHIPQLTPKGLQLLLQLPQPLRMFIGVPLNQPQGLRPTTLSCIHL
Sbjct: 1 MFLRILQLSPDSVQSSHIPQLTPKGLQLLLQLPQPLRMFIGVPLNQPQGLRPTTLSCIHL 60
Query: 61 GGLQQGLPTPRRLSAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHRPPSGPARSWAC 120
GGLQQGLPTPRRLSAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHRPPSGPARSWAC
Sbjct: 61 GGLQQGLPTPRRLSAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHRPPSGPARSWAC 120
Query: 121 GARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNPATR 180
GARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNPATR
Sbjct: 121 GARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNPATR 180
Query: 181 SRSLLRRRCPCCACSVFFARRE 202
SRSLLRRRCPCCACSVFFARRE
Sbjct: 181 SRSLLRRRCPCCACSVFFARRE 202
>gi|239742020 PREDICTED: hypothetical protein XP_002342373 [Homo
sapiens]
Length = 202
Score = 422 bits (1086), Expect = e-119
Identities = 201/202 (99%), Positives = 201/202 (99%)
Query: 1 MFLRILQLSPDSVQSSHIPQLTPKGLQLLLQLPQPLRMFIGVPLNQPQGLRPTTLSCIHL 60
MFLRILQLSPDSVQSSHIPQLTPKGLQLLLQLPQPLRM IGVPLNQPQGLRPTTLSCIHL
Sbjct: 1 MFLRILQLSPDSVQSSHIPQLTPKGLQLLLQLPQPLRMLIGVPLNQPQGLRPTTLSCIHL 60
Query: 61 GGLQQGLPTPRRLSAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHRPPSGPARSWAC 120
GGLQQGLPTPRRLSAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHRPPSGPARSWAC
Sbjct: 61 GGLQQGLPTPRRLSAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHRPPSGPARSWAC 120
Query: 121 GARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNPATR 180
GARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNPATR
Sbjct: 121 GARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNPATR 180
Query: 181 SRSLLRRRCPCCACSVFFARRE 202
SRSLLRRRCPCCACSVFFARRE
Sbjct: 181 SRSLLRRRCPCCACSVFFARRE 202
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 38.1 bits (87), Expect = 0.005
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 109 RPPSGPARSWACGARPPWRLAPAGH-PATPVAAAAAGSATSPAPP 152
+PP P A A+PP APA H PA P AAAA +A + APP
Sbjct: 1313 KPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAAAAAAAAAAPP 1357
Score = 28.1 bits (61), Expect = 5.3
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 104 GARGHRPPSGPARSWACGARPPWRLAPAGHPATPVAAAAAGSATSPAPP 152
GA +PPS A + A+PP AAAAA +A PAPP
Sbjct: 1322 GASPAKPPSPGAPALHVPAKPPRA----------AAAAAAAAAAPPAPP 1360
>gi|61676082 shadow of prion protein [Homo sapiens]
Length = 151
Score = 38.1 bits (87), Expect = 0.005
Identities = 37/102 (36%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 75 AAMLALRAGGEQVCSCGASAQARGWFCCWGARGHRPPSGPARSWACGA-----RPPWRL- 128
A AL +C GA+ RG GARG G R A GA RP R
Sbjct: 6 ATCWALLLAAAFLCDSGAAKGGRG-----GARGSA--RGGVRGGARGASRVRVRPAQRYG 58
Query: 129 APAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASGL 170
AP A AAAG+A A L AGS W R GL
Sbjct: 59 APGSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRAAGPGERGL 100
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 36.6 bits (83), Expect = 0.015
Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 109 RPPSGPARSWACGARPPWRLAPAGHPATPVA-------AAAAGSATSPAPPLRAGSHWSR 161
RPP GPA + A PP +P G PA+P A A PA P R S SR
Sbjct: 760 RPPPGPAPA-AASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRASR 818
Query: 162 EGMKNASGLPGVAVNPATRSR 182
+ LP A PA +R
Sbjct: 819 PLSASQPSLPHGAPGPAASTR 839
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 36.2 bits (82), Expect = 0.019
Identities = 29/70 (41%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 105 ARGHRPPSGPARSWACGARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGM 164
A G PP GP G PP L P+G PA AA AG PAPPL A G
Sbjct: 167 AGGPPPPPGPPPP--PGPPPPPGLPPSGVPA---AAHGAGGGPPPAPPLPAAQGPGGGG- 220
Query: 165 KNASGLPGVA 174
+G PG+A
Sbjct: 221 ---AGAPGLA 227
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 36.2 bits (82), Expect = 0.019
Identities = 38/114 (33%), Positives = 49/114 (42%), Gaps = 21/114 (18%)
Query: 58 IHLGGLQQGLPTPRRLSAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHRPP--SGPA 115
+HLGG+Q G P + + R +V + A AR G G RPP +GPA
Sbjct: 17 LHLGGVQHGRQRPDEHAQRHVVHRGDAARVDAAALRAAARP-----GPLG-RPPTRAGPA 70
Query: 116 RSWAC----------GARPPWRLAPAG--HPATPVAAAAAGSA-TSPAPPLRAG 156
+ +C R P L PAG H A P A A +A SP P R+G
Sbjct: 71 QRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGARARAARVSPPTPPRSG 124
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 36.2 bits (82), Expect = 0.019
Identities = 38/114 (33%), Positives = 49/114 (42%), Gaps = 21/114 (18%)
Query: 58 IHLGGLQQGLPTPRRLSAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHRPP--SGPA 115
+HLGG+Q G P + + R +V + A AR G G RPP +GPA
Sbjct: 17 LHLGGVQHGRQRPDEHAQRHVVHRGDAARVDAAALRAAARP-----GPLG-RPPTRAGPA 70
Query: 116 RSWAC----------GARPPWRLAPAG--HPATPVAAAAAGSA-TSPAPPLRAG 156
+ +C R P L PAG H A P A A +A SP P R+G
Sbjct: 71 QRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGARARAARVSPPTPPRSG 124
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 35.8 bits (81), Expect = 0.025
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 104 GARGHRPPSGPA-RSWACGARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHW--- 159
G +G R +GPA R G PP PAG +P A AG+ +P P AG
Sbjct: 905 GGKGPRGETGPAGRPGEVG--PPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVG 962
Query: 160 --SREGMKNASGLPGVAVNPATRSRS 183
+ G + GLPG + P + S
Sbjct: 963 LPGQRGERGFPGLPGPSGEPGKQGPS 988
Score = 34.3 bits (77), Expect = 0.074
Identities = 33/102 (32%), Positives = 37/102 (36%), Gaps = 28/102 (27%)
Query: 104 GARGHRPPSGPA----RSWACGAR-PPWRLAPAGHPATPVAAAAAGSA------------ 146
G RG GPA A GA PP PAG P P A A G A
Sbjct: 308 GERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQ 367
Query: 147 ---TSPAPPLRAGSHW--------SREGMKNASGLPGVAVNP 177
P PP AG+ + G K A+G PG+A P
Sbjct: 368 GVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAP 409
Score = 30.8 bits (68), Expect = 0.82
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 14/80 (17%)
Query: 104 GARGHRPPSGPARSWACGARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREG 163
G +GHR SG PP P G P + A+G A PP AG+ G
Sbjct: 1106 GIKGHRGFSGLQG-------PP---GPPGSPGEQGPSGASGPAGPRGPPGSAGA----PG 1151
Query: 164 MKNASGLPGVAVNPATRSRS 183
+GLPG P R R+
Sbjct: 1152 KDGLNGLPGPIGPPGPRGRT 1171
Score = 28.9 bits (63), Expect = 3.1
Identities = 29/104 (27%), Positives = 35/104 (33%), Gaps = 14/104 (13%)
Query: 89 SCGASAQARGWFCCWGARGHRPPSG-PARSWACGARPPWRLAPAGHPATPVAAAAAGSAT 147
S G ++ G G G P G P A G P P G P P A+ G
Sbjct: 164 SYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPG--PQGFQGPPGEPGEPGASGPMGPRG 221
Query: 148 SPAPPLRAGSHWSR-----------EGMKNASGLPGVAVNPATR 180
P PP + G G + A GLPG A P +
Sbjct: 222 PPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMK 265
Score = 28.9 bits (63), Expect = 3.1
Identities = 26/87 (29%), Positives = 30/87 (34%), Gaps = 12/87 (13%)
Query: 104 GARGHRPPSGPARSWACGARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHW---- 159
G RG P GPA A PP G P A A G A P P AG
Sbjct: 800 GDRGEPGPPGPAGF----AGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGN 855
Query: 160 ----SREGMKNASGLPGVAVNPATRSR 182
+G + ++G PG P R
Sbjct: 856 VGAPGAKGARGSAGPPGATGFPGAAGR 882
Score = 28.5 bits (62), Expect = 4.1
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 104 GARGHRPPSGPARSWACGARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSH--WSR 161
GARG R P G PP P G P A G A +P P G+
Sbjct: 674 GARGER--GFPGERGVQG--PPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGM 729
Query: 162 EGMKNASGLPG 172
G + A+GLPG
Sbjct: 730 PGERGAAGLPG 740
>gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo
sapiens]
Length = 633
Score = 35.8 bits (81), Expect = 0.025
Identities = 32/108 (29%), Positives = 39/108 (36%), Gaps = 15/108 (13%)
Query: 103 WGARGHRPPSGPARSWACGARPPWRLAPAGH---------PATPVAAAAAGSA-----TS 148
WG + P ACGAR + L A P TP A AAGS S
Sbjct: 85 WGGGEEGGAAKPGAGGACGARTRFSLLAAAERGGCIALAAPGTPAAGLAAGSGPCLPQPS 144
Query: 149 PAPPLRAGSHWSREGMKNASGLPG-VAVNPATRSRSLLRRRCPCCACS 195
PPL G H + G A G + A+ + R P AC+
Sbjct: 145 SLPPLIPGGHATVSGPGVARGFASPLGAGRASGEQWQPPRPAPLAACA 192
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 35.8 bits (81), Expect = 0.025
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 103 WGARGHRPPSGPARSWACGARPPWRLAPAGHPATPVAAAA-AGSATSPAPPLRAGSHWSR 161
WG+ SG RS A G RP +P P++P +A +P PP R S
Sbjct: 308 WGSPQRNGGSGQ-RSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSP 366
Query: 162 EGMKNASGLPGVAVNPATRSRSLLRRR 188
++ G G A A R R RRR
Sbjct: 367 RSAPSSQGRGGRAAGGAGRRRRRRRRR 393
>gi|27369497 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase
2 [Homo sapiens]
Length = 530
Score = 35.4 bits (80), Expect = 0.033
Identities = 29/63 (46%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 91 GASAQARGWFCCWGARGHRPPSGPARSWA-CGARPPWRLAPAGHPATPVAAAAAGSATSP 149
GA+A A G WG G PP+GP R+ A R P+R A A P AAAAG A
Sbjct: 93 GAAAGAAGG--SWGRPGP-PPAGPPRAHARLDLRTPYRPPAAAVGAAP--AAAAGMAGVA 147
Query: 150 APP 152
APP
Sbjct: 148 APP 150
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 35.4 bits (80), Expect = 0.033
Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 21/95 (22%)
Query: 104 GARGHRPPSGP--ARSWACGARPPWRLAPA-------------------GHPATPVAAAA 142
GARG + PSGP +RP R AP G P +P A +
Sbjct: 366 GARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGS 425
Query: 143 AGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNP 177
G SP PP G R+G GLPG +P
Sbjct: 426 PGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSP 460
Score = 30.4 bits (67), Expect = 1.1
Identities = 29/118 (24%), Positives = 42/118 (35%), Gaps = 27/118 (22%)
Query: 68 PTPRRLSAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHR-------PPSGPARSWAC 120
P P+ L +L + S G + +G C GA+G + PP P +
Sbjct: 7 PRPQVLLLPLLLVLLAAAPAASKGCVCKDKGQCFCDGAKGEKGEKGFPGPPGSPGQKGFT 66
Query: 121 GARP-PWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNP 177
G P P G P P GS +G++ SGLPG + +P
Sbjct: 67 GPEGLPGPQGPKGFPGLP---GLTGS----------------KGVRGISGLPGFSGSP 105
Score = 29.6 bits (65), Expect = 1.8
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 124 PPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSR--EGMKNASGLPGVAVNP 177
PP L PAG P GS SP P + G H +G+K G PG+ P
Sbjct: 1090 PPGHLGPAGPEGAP------GSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPP 1139
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 35.4 bits (80), Expect = 0.033
Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 21/95 (22%)
Query: 104 GARGHRPPSGP--ARSWACGARPPWRLAPA-------------------GHPATPVAAAA 142
GARG + PSGP +RP R AP G P +P A +
Sbjct: 366 GARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGS 425
Query: 143 AGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNP 177
G SP PP G R+G GLPG +P
Sbjct: 426 PGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSP 460
Score = 32.0 bits (71), Expect = 0.37
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 110 PPSGPARSWACGARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASG 169
PP P CG P + G P TP A G+ S P AGS +G+ G
Sbjct: 1377 PPGPPGNLGPCG--PRGKPGKDGKPGTPGPAGEKGNKGSKGEPGPAGS----DGLPGLKG 1430
Query: 170 LPGVAVNPAT 179
G + +PAT
Sbjct: 1431 KRGDSGSPAT 1440
Score = 30.4 bits (67), Expect = 1.1
Identities = 29/118 (24%), Positives = 42/118 (35%), Gaps = 27/118 (22%)
Query: 68 PTPRRLSAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHR-------PPSGPARSWAC 120
P P+ L +L + S G + +G C GA+G + PP P +
Sbjct: 7 PRPQVLLLPLLLVLLAAAPAASKGCVCKDKGQCFCDGAKGEKGEKGFPGPPGSPGQKGFT 66
Query: 121 GARP-PWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNP 177
G P P G P P GS +G++ SGLPG + +P
Sbjct: 67 GPEGLPGPQGPKGFPGLP---GLTGS----------------KGVRGISGLPGFSGSP 105
Score = 29.6 bits (65), Expect = 1.8
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 124 PPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSR--EGMKNASGLPGVAVNP 177
PP L PAG P GS SP P + G H +G+K G PG+ P
Sbjct: 1090 PPGHLGPAGPEGAP------GSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPP 1139
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 35.4 bits (80), Expect = 0.033
Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 21/95 (22%)
Query: 104 GARGHRPPSGP--ARSWACGARPPWRLAPA-------------------GHPATPVAAAA 142
GARG + PSGP +RP R AP G P +P A +
Sbjct: 366 GARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGS 425
Query: 143 AGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNP 177
G SP PP G R+G GLPG +P
Sbjct: 426 PGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSP 460
Score = 32.0 bits (71), Expect = 0.37
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 110 PPSGPARSWACGARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASG 169
PP P CG P + G P TP A G+ S P AGS +G+ G
Sbjct: 1377 PPGPPGNLGPCG--PRGKPGKDGKPGTPGPAGEKGNKGSKGEPGPAGS----DGLPGLKG 1430
Query: 170 LPGVAVNPAT 179
G + +PAT
Sbjct: 1431 KRGDSGSPAT 1440
Score = 30.4 bits (67), Expect = 1.1
Identities = 29/118 (24%), Positives = 42/118 (35%), Gaps = 27/118 (22%)
Query: 68 PTPRRLSAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHR-------PPSGPARSWAC 120
P P+ L +L + S G + +G C GA+G + PP P +
Sbjct: 7 PRPQVLLLPLLLVLLAAAPAASKGCVCKDKGQCFCDGAKGEKGEKGFPGPPGSPGQKGFT 66
Query: 121 GARP-PWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNP 177
G P P G P P GS +G++ SGLPG + +P
Sbjct: 67 GPEGLPGPQGPKGFPGLP---GLTGS----------------KGVRGISGLPGFSGSP 105
Score = 29.6 bits (65), Expect = 1.8
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 124 PPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSR--EGMKNASGLPGVAVNP 177
PP L PAG P GS SP P + G H +G+K G PG+ P
Sbjct: 1090 PPGHLGPAGPEGAP------GSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPP 1139
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 35.4 bits (80), Expect = 0.033
Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 21/95 (22%)
Query: 104 GARGHRPPSGP--ARSWACGARPPWRLAPA-------------------GHPATPVAAAA 142
GARG + PSGP +RP R AP G P +P A +
Sbjct: 366 GARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGS 425
Query: 143 AGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNP 177
G SP PP G R+G GLPG +P
Sbjct: 426 PGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSP 460
Score = 32.0 bits (71), Expect = 0.37
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 110 PPSGPARSWACGARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASG 169
PP P CG P + G P TP A G+ S P AGS +G+ G
Sbjct: 1377 PPGPPGNLGPCG--PRGKPGKDGKPGTPGPAGEKGNKGSKGEPGPAGS----DGLPGLKG 1430
Query: 170 LPGVAVNPAT 179
G + +PAT
Sbjct: 1431 KRGDSGSPAT 1440
Score = 30.4 bits (67), Expect = 1.1
Identities = 29/118 (24%), Positives = 42/118 (35%), Gaps = 27/118 (22%)
Query: 68 PTPRRLSAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHR-------PPSGPARSWAC 120
P P+ L +L + S G + +G C GA+G + PP P +
Sbjct: 7 PRPQVLLLPLLLVLLAAAPAASKGCVCKDKGQCFCDGAKGEKGEKGFPGPPGSPGQKGFT 66
Query: 121 GARP-PWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNP 177
G P P G P P GS +G++ SGLPG + +P
Sbjct: 67 GPEGLPGPQGPKGFPGLP---GLTGS----------------KGVRGISGLPGFSGSP 105
Score = 29.6 bits (65), Expect = 1.8
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 124 PPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSR--EGMKNASGLPGVAVNP 177
PP L PAG P GS SP P + G H +G+K G PG+ P
Sbjct: 1090 PPGHLGPAGPEGAP------GSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPP 1139
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 35.0 bits (79), Expect = 0.043
Identities = 38/118 (32%), Positives = 45/118 (38%), Gaps = 13/118 (11%)
Query: 66 GLPTPRRLSAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHRPPSGPARSWACGARPP 125
GLP PR + + A A G ARG G G + SG + A P
Sbjct: 322 GLPGPRGIPGPVGAAGATG-----------ARGLVGEPGPAGSKGESGN-KGEPGSAGPQ 369
Query: 126 WRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNPATRSRS 183
P+G AGSA P PP GS SR G+ A G GV P +R S
Sbjct: 370 GPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSR-GLPGADGRAGVMGPPGSRGAS 426
Score = 30.0 bits (66), Expect = 1.4
Identities = 24/70 (34%), Positives = 27/70 (38%), Gaps = 10/70 (14%)
Query: 104 GARGHRPPSGPARSWACGARPPWRL-APAGHPATPVAAAAAGSATSPAPPLRAGSHWSRE 162
G G R P G A GA P PAG P P AG+ PP +AG +
Sbjct: 94 GLMGPRGPPG-----AAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAG----ED 144
Query: 163 GMKNASGLPG 172
G G PG
Sbjct: 145 GHPGKPGRPG 154
Score = 28.9 bits (63), Expect = 3.1
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 20/74 (27%)
Query: 104 GARGHRPPSGPARSWACGARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSREG 163
GA G+ P+GPA P G P + G PP G++ G
Sbjct: 268 GAVGNAGPAGPA-------------GPRGEVGLPGLSGPVG------PPGNPGAN-GLTG 307
Query: 164 MKNASGLPGVAVNP 177
K A+GLPGVA P
Sbjct: 308 AKGAAGLPGVAGAP 321
Score = 27.7 bits (60), Expect = 6.9
Identities = 23/72 (31%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 104 GARGHRPPSGPA-RSWACGARPPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSRE 162
G RG R GP R+ GA P A P+ A P L A
Sbjct: 817 GLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLP 876
Query: 163 GMKNASGLPGVA 174
G + GLPGVA
Sbjct: 877 GSRGERGLPGVA 888
>gi|239753500 PREDICTED: hypothetical protein [Homo sapiens]
Length = 213
Score = 35.0 bits (79), Expect = 0.043
Identities = 34/98 (34%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 67 LPTPRRL---SAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHRPPSGPARSWACGAR 123
LP P RL +A A R QV ASA G GARG P +R + R
Sbjct: 26 LPFPERLPRPAAKEPAARTPARQVFPAAASAGREGSAAPDGARGSTPGLAASRELSPPPR 85
Query: 124 PPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSR 161
P R PA HP A + LR GSH +R
Sbjct: 86 AP-RTVPAPHPRLSPARRPGAEPENKFVALR-GSHKTR 121
>gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo
sapiens]
Length = 213
Score = 35.0 bits (79), Expect = 0.043
Identities = 34/98 (34%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 67 LPTPRRL---SAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHRPPSGPARSWACGAR 123
LP P RL +A A R QV ASA G GARG P +R + R
Sbjct: 26 LPFPERLPRPAAKEPAARTPARQVFPAAASAGREGSAAPDGARGSTPGLAASRELSPPPR 85
Query: 124 PPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSR 161
P R PA HP A + LR GSH +R
Sbjct: 86 AP-RTVPAPHPRLSPARRPGAEPENKFVALR-GSHKTR 121
>gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo
sapiens]
Length = 213
Score = 35.0 bits (79), Expect = 0.043
Identities = 34/98 (34%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 67 LPTPRRL---SAAMLALRAGGEQVCSCGASAQARGWFCCWGARGHRPPSGPARSWACGAR 123
LP P RL +A A R QV ASA G GARG P +R + R
Sbjct: 26 LPFPERLPRPAAKEPAARTPARQVFPAAASAGREGSAAPDGARGSTPGLAASRELSPPPR 85
Query: 124 PPWRLAPAGHPATPVAAAAAGSATSPAPPLRAGSHWSR 161
P R PA HP A + LR GSH +R
Sbjct: 86 AP-RTVPAPHPRLSPARRPGAEPENKFVALR-GSHKTR 121
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 34.7 bits (78), Expect = 0.057
Identities = 27/78 (34%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 104 GARGHRPPSGPARSWACGARPPWRLAPAGHPATPVAAAAAGSA--TSPAPPLRAGSHWSR 161
GARG+ GPA PP + PAG P P A A G A T P A
Sbjct: 342 GARGNDGQPGPAG-------PPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGE 394
Query: 162 EGMKNASGLPGVAVNPAT 179
G + G G + NP T
Sbjct: 395 PGTPGSPGPAGASGNPGT 412
Score = 28.5 bits (62), Expect = 4.1
Identities = 26/91 (28%), Positives = 30/91 (32%), Gaps = 12/91 (13%)
Query: 104 GARGHRPPSGPARSWACGARPPWRLAPAGH-----------PATPVAAAAAGSATSPAPP 152
GARG + P GP R A P GH P P A P+ P
Sbjct: 1104 GARGIQGPQGP-RGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGP 1162
Query: 153 LRAGSHWSREGMKNASGLPGVAVNPATRSRS 183
G A+G+PG P R RS
Sbjct: 1163 RGPPGPVGPSGKDGANGIPGPIGPPGPRGRS 1193
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 34.7 bits (78), Expect = 0.057
Identities = 27/78 (34%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 104 GARGHRPPSGPARSWACGARPPWRLAPAGHPATPVAAAAAGSA--TSPAPPLRAGSHWSR 161
GARG+ GPA PP + PAG P P A A G A T P A
Sbjct: 273 GARGNDGQPGPAG-------PPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGE 325
Query: 162 EGMKNASGLPGVAVNPAT 179
G + G G + NP T
Sbjct: 326 PGTPGSPGPAGASGNPGT 343
Score = 28.5 bits (62), Expect = 4.1
Identities = 26/91 (28%), Positives = 30/91 (32%), Gaps = 12/91 (13%)
Query: 104 GARGHRPPSGPARSWACGARPPWRLAPAGH-----------PATPVAAAAAGSATSPAPP 152
GARG + P GP R A P GH P P A P+ P
Sbjct: 1035 GARGIQGPQGP-RGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGP 1093
Query: 153 LRAGSHWSREGMKNASGLPGVAVNPATRSRS 183
G A+G+PG P R RS
Sbjct: 1094 RGPPGPVGPSGKDGANGIPGPIGPPGPRGRS 1124
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 34.7 bits (78), Expect = 0.057
Identities = 54/189 (28%), Positives = 70/189 (37%), Gaps = 39/189 (20%)
Query: 30 LQLPQPLRMFIGVP-LNQPQGLRPTTLSCIHLGG---LQQGLPTPRRLSAAMLALRAGGE 85
L P P ++ G + +P + P S + +GG + P P R RAG
Sbjct: 22 LNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAG-- 79
Query: 86 QVCSCGASAQ-ARGWFCCWGARGHRPPSGP-ARSWACGARPPWRLAPAGHPATPVAAAAA 143
CGA +RG G+R PP+GP AR+ A G P PA A P AA A
Sbjct: 80 ----CGAHGPGSRGRERRRGSRD--PPAGPVARARARGRSAPGSAQPASGAAGPAAAPEA 133
Query: 144 GS-----------------ATSPAPPLRAGSHWSREGMKNAS--------GLPGVAVNPA 178
+SP P+R G + G S LPG V+ A
Sbjct: 134 APPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVAPHPALPGAQVHWA 193
Query: 179 TRSRSLLRR 187
R R RR
Sbjct: 194 GRHRWAARR 202
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 34.7 bits (78), Expect = 0.057
Identities = 54/189 (28%), Positives = 70/189 (37%), Gaps = 39/189 (20%)
Query: 30 LQLPQPLRMFIGVP-LNQPQGLRPTTLSCIHLGG---LQQGLPTPRRLSAAMLALRAGGE 85
L P P ++ G + +P + P S + +GG + P P R RAG
Sbjct: 22 LNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAG-- 79
Query: 86 QVCSCGASAQ-ARGWFCCWGARGHRPPSGP-ARSWACGARPPWRLAPAGHPATPVAAAAA 143
CGA +RG G+R PP+GP AR+ A G P PA A P AA A
Sbjct: 80 ----CGAHGPGSRGRERRRGSRD--PPAGPVARARARGRSAPGSAQPASGAAGPAAAPEA 133
Query: 144 GS-----------------ATSPAPPLRAGSHWSREGMKNAS--------GLPGVAVNPA 178
+SP P+R G + G S LPG V+ A
Sbjct: 134 APPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVAPHPALPGAQVHWA 193
Query: 179 TRSRSLLRR 187
R R RR
Sbjct: 194 GRHRWAARR 202
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 34.3 bits (77), Expect = 0.074
Identities = 34/103 (33%), Positives = 44/103 (42%), Gaps = 17/103 (16%)
Query: 62 GLQQGLPTPRRLSAAMLALRAGGEQVCSCGASAQARGWFCCW-GARGHRPP-SGPARSW- 118
G + T +SAA A AGG G++A G GARG P G +++
Sbjct: 223 GSKSSAGTGASVSAAATAAAAGGG-----GSTASTSGGVGAGAGARGKLSPRKGKSKTLD 277
Query: 119 --------ACGARPPWRLAPAGHPATPVAAAAAGSATSPAPPL 153
G+ PP L P PAT V AA+A PAPP+
Sbjct: 278 NSDLHPGPPAGSPPPLTLPPTPSPATAVTAASA-QPPGPAPPI 319
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 34.3 bits (77), Expect = 0.074
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 79 ALRAGGE-QVCSCGASAQARGWFCCWGARGHRPPSGP----ARSWACGARPPWRLAPAGH 133
A AGG V + A+A A C H P P A S A G PP A A
Sbjct: 63 AAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAAAA 122
Query: 134 PATPVAAAAAGSAT-SPAPPLRAGSHWSRE 162
A AAAAA S++ P P AG+ +++
Sbjct: 123 AAAAAAAAAAASSSGGPGPAGPAGAEAAKQ 152
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 34.3 bits (77), Expect = 0.074
Identities = 54/189 (28%), Positives = 70/189 (37%), Gaps = 39/189 (20%)
Query: 30 LQLPQPLRMFIGVP-LNQPQGLRPTTLSCIHLGG---LQQGLPTPRRLSAAMLALRAGGE 85
L P P ++ G + +P + P S + +GG + P P R RAG
Sbjct: 22 LNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAG-- 79
Query: 86 QVCSCGASAQ-ARGWFCCWGARGHRPPSGP-ARSWACGARPPWRLAPAGHPATPVAAAAA 143
CGA +RG G+R PP+GP AR+ A G P PA A P AA A
Sbjct: 80 ----CGAHGPGSRGRERRRGSRD--PPAGPVARARARGRSAPGSAQPASGAAGPAAAPEA 133
Query: 144 GS-----------------ATSPAPPLRAGSHWSREGMKNAS--------GLPGVAVNPA 178
+SP P+R G + G S LPG V+ A
Sbjct: 134 APPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGPSILRVAPHPALPGAQVHWA 193
Query: 179 TRSRSLLRR 187
R R RR
Sbjct: 194 GRHRWAARR 202
>gi|239508745 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 34.3 bits (77), Expect = 0.074
Identities = 51/183 (27%), Positives = 63/183 (34%), Gaps = 33/183 (18%)
Query: 43 PLNQPQGLRPTTLSCIHLGG-LQQG----------LPTPRRLSAAMLALRAGGEQVCSCG 91
PLNQP G + + + GG L+ G L P SA + G + +
Sbjct: 33 PLNQPPGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALF 92
Query: 92 ASAQARGWFCCWGARGH----RPPSGPARS---WACGARPPWRLAPAGHPATPVAAAA-- 142
S+Q R G G RP + R W G RP L A A AA A
Sbjct: 93 PSSQNRHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAGR 152
Query: 143 ----------AGSATSPAPPLRAGSHWSREGMKNASGLPGVAVNPATRSRS---LLRRRC 189
AG A P P G G ASG+ G A+ A R + LL
Sbjct: 153 RRERACAGRSAGDAAGPEAPQPTGGRGCSRGSATASGVGGKAIKKAQRIPAELYLLYIHV 212
Query: 190 PCC 192
CC
Sbjct: 213 NCC 215
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 34.3 bits (77), Expect = 0.074
Identities = 31/80 (38%), Positives = 34/80 (42%), Gaps = 23/80 (28%)
Query: 110 PPSGPARSWACGARPPWRLAPA------GHPATPVAAAAA----------GSA-TSPAPP 152
PP+ PA + A PP APA GHPA P AA A GSA +PAP
Sbjct: 257 PPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPA 316
Query: 153 LRAGSHWSREGMKNASGLPG 172
AG G SG PG
Sbjct: 317 PAAG------GPAGVSGQPG 330
Score = 27.7 bits (60), Expect = 6.9
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 111 PSGPARSWACGARPPWRLAPAGHPATPVAAAAAGSATSPAPPLR 154
P+GPA A PP A + P AA AAG +PA P +
Sbjct: 116 PAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAK 159
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.135 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,889,179
Number of Sequences: 37866
Number of extensions: 573110
Number of successful extensions: 4187
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 318
Number of HSP's that attempted gapping in prelim test: 3764
Number of HSP's gapped (non-prelim): 713
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.