Guide to the Human Genome
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Name: LOC100287401 Sequence: fasta or formatted (202aa) NCBI GI: 239742020
Description:

PREDICTED: hypothetical protein XP_002342373

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         27           5
 C cysteine            5.0         10           2
 D aspartate           0.5          1           1
 E glutamate           1.5          3           1
 F phenylalanine       2.0          4           2
 G glycine             9.9         20           2
 H histidine           2.5          5           1
 I isoleucine          2.0          4           1
 K lysine              1.0          2           1
 L leucine            12.4         25           3
 M methionine          2.0          4           1
 N asparagine          1.5          3           1
 P proline            11.9         24           2
 Q glutamine           5.9         12           2
 R arginine           10.4         21           3
 S serine              8.9         18           2
 T threonine           3.5          7           2
 V valine              3.5          7           1
 W tryptophan          2.5          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342373 
LOC100291594          0.995   PREDICTED: hypothetical protein XP_002345692 
LOC100289769          0.995   PREDICTED: hypothetical protein XP_002346534 
CASKIN1               0.033   CASK interacting protein 1 
SPRN                  0.033   shadow of prion protein 
HCN2                  0.030   hyperpolarization activated cyclic nucleotide-gated...
VASP                  0.028   vasodilator-stimulated phosphoprotein 
LOC100289408          0.028   PREDICTED: hypothetical protein 
LOC100289763          0.028   PREDICTED: hypothetical protein XP_002347867 
LOC100289408          0.028   PREDICTED: hypothetical protein XP_002344217 
LOC100289681          0.028   PREDICTED: hypothetical protein XP_002343623 
COL1A1                0.028   alpha 1 type I collagen preproprotein 
LOC100292172          0.028   PREDICTED: hypothetical protein 
CABLES1               0.028   Cdk5 and Abl enzyme substrate 1 isoform 2 
FLJ37078              0.028   hypothetical protein LOC222183 
CHST2                 0.025   carbohydrate (N-acetylglucosamine-6-O) sulfotransfer...
COL4A3                0.025   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.025   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.025   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.025   alpha 3 type IV collagen isoform 1 precursor 
COL1A2                0.025   alpha 2 type I collagen 
LOC100293980          0.025   PREDICTED: hypothetical protein 
LOC100290741          0.025   PREDICTED: hypothetical protein XP_002346521 
LOC100288445          0.025   PREDICTED: hypothetical protein XP_002342359 
COL2A1                0.025   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.025   collagen, type II, alpha 1 isoform 2 precursor [Hom...
AGAP2                 0.023   centaurin, gamma 1 isoform PIKE-L 
HOXA13                0.023   homeobox A13 
LOC100129036          0.023   PREDICTED: hypothetical protein 
TAF4                  0.023   TBP-associated factor 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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