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Search of human proteins with 239753409
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753409 PREDICTED: similar to hCG1811893 [Homo sapiens]
(669 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753409 PREDICTED: similar to hCG1811893 [Homo sapiens] 1363 0.0
gi|153792764 hypothetical protein LOC57624 [Homo sapiens] 1241 0.0
gi|62177127 myosin heavy chain Myr 8 [Homo sapiens] 357 2e-98
gi|37537554 hypothetical protein FLJ37538 [Homo sapiens] 209 7e-54
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 62 2e-09
gi|58530876 melanoma antigen family C, 1 [Homo sapiens] 62 2e-09
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 60 8e-09
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 56 9e-08
gi|163965366 nascent polypeptide-associated complex alpha subuni... 56 9e-08
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 56 9e-08
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 54 4e-07
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 54 6e-07
gi|55750053 atrophin-1 [Homo sapiens] 53 8e-07
gi|55750041 atrophin-1 [Homo sapiens] 53 8e-07
gi|47132519 Ras association and pleckstrin homology domains 1 is... 53 1e-06
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens] 53 1e-06
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 52 2e-06
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 52 2e-06
gi|18079216 CASK interacting protein 1 [Homo sapiens] 52 2e-06
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 51 3e-06
gi|146134388 YLP motif containing 1 [Homo sapiens] 51 4e-06
gi|26051278 nuclear pore membrane protein 121 [Homo sapiens] 50 5e-06
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 49 1e-05
gi|189011568 adenomatous polyposis coli [Homo sapiens] 49 2e-05
gi|189011566 adenomatous polyposis coli [Homo sapiens] 49 2e-05
gi|53759122 adenomatous polyposis coli [Homo sapiens] 49 2e-05
gi|64084766 fidgetin [Homo sapiens] 48 3e-05
gi|38787970 tensin like C1 domain containing phosphatase isoform... 48 3e-05
gi|38787957 tensin like C1 domain containing phosphatase isoform... 48 3e-05
gi|38787941 tensin like C1 domain containing phosphatase isoform... 48 3e-05
>gi|239753409 PREDICTED: similar to hCG1811893 [Homo sapiens]
Length = 669
Score = 1363 bits (3529), Expect = 0.0
Identities = 669/669 (100%), Positives = 669/669 (100%)
Query: 1 MISSKMMSSNPEEDPLDTFLQYIEDMGMKAYDGLVIQNASDIARENDRLRNETNLAYLKE 60
MISSKMMSSNPEEDPLDTFLQYIEDMGMKAYDGLVIQNASDIARENDRLRNETNLAYLKE
Sbjct: 1 MISSKMMSSNPEEDPLDTFLQYIEDMGMKAYDGLVIQNASDIARENDRLRNETNLAYLKE 60
Query: 61 KNEKRRRQEEAIKRIGGEVGRGHEGSYVGKHFRMGFMTMPAPQDRLPHPCSSGFSVRSQS 120
KNEKRRRQEEAIKRIGGEVGRGHEGSYVGKHFRMGFMTMPAPQDRLPHPCSSGFSVRSQS
Sbjct: 61 KNEKRRRQEEAIKRIGGEVGRGHEGSYVGKHFRMGFMTMPAPQDRLPHPCSSGFSVRSQS 120
Query: 121 LHSVGGTDDDSSCGSRRQPPPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPR 180
LHSVGGTDDDSSCGSRRQPPPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPR
Sbjct: 121 LHSVGGTDDDSSCGSRRQPPPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPR 180
Query: 181 PHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKKHGPRRTSLPRDSSLSQMGSPAGDPEE 240
PHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKKHGPRRTSLPRDSSLSQMGSPAGDPEE
Sbjct: 181 PHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKKHGPRRTSLPRDSSLSQMGSPAGDPEE 240
Query: 241 EEPVYIEMVGNILRDFRKEDDDQSEAVYEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPT 300
EEPVYIEMVGNILRDFRKEDDDQSEAVYEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPT
Sbjct: 241 EEPVYIEMVGNILRDFRKEDDDQSEAVYEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPT 300
Query: 301 VPDLDFAKASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEV 360
VPDLDFAKASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEV
Sbjct: 301 VPDLDFAKASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEV 360
Query: 361 TKLPVLENVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTL 420
TKLPVLENVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTL
Sbjct: 361 TKLPVLENVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTL 420
Query: 421 YRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPV 480
YRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPV
Sbjct: 421 YRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPV 480
Query: 481 SQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSGRSLLRKSSSGRRSKEPAEK 540
SQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSGRSLLRKSSSGRRSKEPAEK
Sbjct: 481 SQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSGRSLLRKSSSGRRSKEPAEK 540
Query: 541 STEELKVRSHSTEPLPKLDNKERGHHGASSSREPVKAQEWDGTPGPPVVTSRLGRCSVSP 600
STEELKVRSHSTEPLPKLDNKERGHHGASSSREPVKAQEWDGTPGPPVVTSRLGRCSVSP
Sbjct: 541 STEELKVRSHSTEPLPKLDNKERGHHGASSSREPVKAQEWDGTPGPPVVTSRLGRCSVSP 600
Query: 601 TLLAGNHSSDLVLERNSGGGLDHESAWGSQDSQDVFQGALQDTQLPTKDIERTTMMSPGR 660
TLLAGNHSSDLVLERNSGGGLDHESAWGSQDSQDVFQGALQDTQLPTKDIERTTMMSPGR
Sbjct: 601 TLLAGNHSSDLVLERNSGGGLDHESAWGSQDSQDVFQGALQDTQLPTKDIERTTMMSPGR 660
Query: 661 WLAKVMGSA 669
WLAKVMGSA
Sbjct: 661 WLAKVMGSA 669
>gi|153792764 hypothetical protein LOC57624 [Homo sapiens]
Length = 653
Score = 1241 bits (3210), Expect = 0.0
Identities = 617/652 (94%), Positives = 624/652 (95%), Gaps = 10/652 (1%)
Query: 1 MISSKMMSSNPEEDPLDTFLQYIEDMGMKAYDGLVIQNASDIARENDRLRNETNLAYLKE 60
MISSKMMSSNPEEDPLDTFLQYIEDMGMKAYDGLVIQNASDIARENDRLRNETNLAYLKE
Sbjct: 1 MISSKMMSSNPEEDPLDTFLQYIEDMGMKAYDGLVIQNASDIARENDRLRNETNLAYLKE 60
Query: 61 KNEKRRRQEEAIKRIGGEVGRGHEGSYVGKHFRMGFMTMPAPQDRLPHPCSSGFSVRSQS 120
KNEKRRRQEEAIKRIGGEVGRGHEGSYVGKHFRMGFMTMPAPQDRLPHPCSSGFSVRSQS
Sbjct: 61 KNEKRRRQEEAIKRIGGEVGRGHEGSYVGKHFRMGFMTMPAPQDRLPHPCSSGFSVRSQS 120
Query: 121 LHSVGGTDDDSSCGSRRQPPPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPR 180
LHSVGGTDDDSSCGSRRQPPPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPR
Sbjct: 121 LHSVGGTDDDSSCGSRRQPPPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPR 180
Query: 181 PHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKKHGPRRTSLPRDSSLSQMGSPAGDPEE 240
PHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKKHGPRRTSLPRDSSLSQMGSPAGDPEE
Sbjct: 181 PHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKKHGPRRTSLPRDSSLSQMGSPAGDPEE 240
Query: 241 EEPVYIEMVGNILRDFRKEDDDQSEAVYEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPT 300
EEPVYIEMVGNILRDFRKEDDDQSEAVYEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPT
Sbjct: 241 EEPVYIEMVGNILRDFRKEDDDQSEAVYEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPT 300
Query: 301 VPDLDFAKASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEV 360
VPDLDFAKASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEV
Sbjct: 301 VPDLDFAKASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEV 360
Query: 361 TKLPVLENVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTL 420
TKLPVLENVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTL
Sbjct: 361 TKLPVLENVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTL 420
Query: 421 YRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPV 480
YRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPV
Sbjct: 421 YRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPV 480
Query: 481 SQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSGRSLLRKSSSGRRSKEPAEK 540
SQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSGRSLLRKSSSGRRSKEPAEK
Sbjct: 481 SQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSGRSLLRKSSSGRRSKEPAEK 540
Query: 541 STEELKVRSHSTEPLPKLDNKERGHHGASSSREPVKAQEWDGTPGPPVVTSRLGRCSVSP 600
STEELKVRSHSTEPLPKLDNKERGHHGASSSREPVKAQEWDGTPG PVVTSRLGRCSVSP
Sbjct: 541 STEELKVRSHSTEPLPKLDNKERGHHGASSSREPVKAQEWDGTPGTPVVTSRLGRCSVSP 600
Query: 601 TLLAGNHSSDLVLERNSG-----GGLDHESAWGSQDSQDVFQGALQDTQLPT 647
TLLAGNHSS+ + G G+ S + S D LQ +Q+P+
Sbjct: 601 TLLAGNHSSEPKVSCKLGRSASTSGVPPPSVTPLRQSSD-----LQQSQVPS 647
>gi|62177127 myosin heavy chain Myr 8 [Homo sapiens]
Length = 1858
Score = 357 bits (916), Expect = 2e-98
Identities = 252/595 (42%), Positives = 324/595 (54%), Gaps = 71/595 (11%)
Query: 12 EEDPLDTFLQYIEDMGMKAYDGLVIQNASDIARENDRLRNETNLAYLKEKNEKRRRQEEA 71
E +++FLQ EDMG+K YD LVIQNASDIARENDRLR+E N Y KEK E R QEE
Sbjct: 1177 EVTSINSFLQNTEDMGLKTYDALVIQNASDIARENDRLRSEMNAPYHKEKLEVRNMQEEG 1236
Query: 72 IKRIGGEVGRGHEGSYVGKHFRMGFMTMPAPQDRLPHPCSSGFSVRSQSLHSVGGTDDDS 131
KR + G +HF M++ A D L C G S+ S SLHSV DD S
Sbjct: 1237 SKRTDDKSGP--------RHFHPSSMSVCAAVDGLGQ-CLVGPSIWSPSLHSVFSMDDSS 1287
Query: 132 SCGS-RRQPPPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPRPHSDEYS--K 188
S S R+QPPPKPKRDP+T+LS S E VS A S EA A+PRPHSD+YS K
Sbjct: 1288 SLPSPRKQPPPKPKRDPNTRLSASYEAVS---ACLSAAREAANEALARPRPHSDDYSTMK 1344
Query: 189 KIPPPKPKRNPNTQLSTSFDETYIKKHGPRRTSLPRDSSLSQM-----------GSPAGD 237
KIPP KPKR+PNT+LS S++E + G R + ++ + +P GD
Sbjct: 1345 KIPPRKPKRSPNTKLSGSYEEISGSRPGDARPAGAPGAAARVLTPGTPQCALPPAAPPGD 1404
Query: 238 PEEEEPVYIEMVGNILRDFRKEDDDQSEAVYEEMKYPIFDDLGQDAKCDFDHHSCSSQCA 297
++ EPVYIEM+G+ R + D E+VYEEMK + DD G A H A
Sbjct: 1405 EDDSEPVYIEMLGHAARP---DSPDPGESVYEEMKCCLPDDGGPGAGSFLLHG------A 1455
Query: 298 TPTVPDLDFAKASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTP 357
+P P L A P G CDIPPPFPNLL HRPPLLVFPP PV CSP SDESPLTP
Sbjct: 1456 SP--PLLHRAPEDEAAGPPGDACDIPPPFPNLLPHRPPLLVFPPTPVTCSPASDESPLTP 1513
Query: 358 LEVTKLPVLE-NVSYMKQPAGASPSTLPSHVPGHAKLEK---EQAAALG----------- 402
LEV KLPVLE N+ Y QP G+SP + P ++K +K ++ A+ G
Sbjct: 1514 LEVKKLPVLETNLKYPVQPEGSSPLS-----PQYSKSQKGDGDRPASPGLALFNGSGRAS 1568
Query: 403 PASATPALSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKR--PPPYDAV 460
P S P P PP YR + +P P+PV+ G++ + P P A
Sbjct: 1569 PPSTPPPPPPPPGPPPAPYRPCAHLAFP----PEPAPVNAGKAGPSAEAPKVHPKPNSAP 1624
Query: 461 HSGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSS 520
+G S S P +P+S + D K ++A +P SR +SPL+EL SLF+S
Sbjct: 1625 VAGPCS-SFPKIPYSPVKATRADARKAGSSASPPAPYSPPSSRPL--SSPLDELASLFNS 1681
Query: 521 GRSLLRKSSSGRRSKEPAEKSTEELKVRSH----STEPLPKLDNKERGHHGASSS 571
GRS+LRKS++GR+ +E AE + + S ++E + ++ +HG S
Sbjct: 1682 GRSVLRKSAAGRKIRE-AEGFETNMNISSRDDPSTSEITSETQDRNANNHGIQLS 1735
>gi|37537554 hypothetical protein FLJ37538 [Homo sapiens]
Length = 841
Score = 209 bits (532), Expect = 7e-54
Identities = 160/451 (35%), Positives = 206/451 (45%), Gaps = 95/451 (21%)
Query: 54 NLAYLKEKNEKRRRQEEAIKR-----------IGGEVGRG-----HEGSYVGKHFRMGFM 97
NL Y K K E R+ +EE KR G G+G + + + + RMGFM
Sbjct: 2 NLLYRKTKLEWRQHKEEEAKRSSSKEVAPAGSAGPAAGQGPGVRVRDIASLRRSLRMGFM 61
Query: 98 TMPAPQDRLPHPCSSGFSVRSQSLHSVGGTDD------DSSCG-----SRRQPPPKPKRD 146
TMPA Q+ PHPC S + RS S HSVG D +S G S R+PP KP+R
Sbjct: 62 TMPASQEHTPHPCRSAMAPRSLSCHSVGSMDSVGGGPGGASGGLTEDSSTRRPPAKPRRH 121
Query: 147 PSTKLSTSSETVSSTAASKSGKTPERTEASAKPRPHSDEYSKKIPPPKPKRNPNTQLSTS 206
PSTKLS S + P + S KP P E S+K+PP KP+R+PNTQLS S
Sbjct: 122 PSTKLSMVGP------GSGAETPPSKKAGSQKPTPEGRESSRKVPPQKPRRSPNTQLSVS 175
Query: 207 FDETYIKKHGPRRTSLPRDSSLSQMGSPAGDPE---EEEPVYIEMVGNILRDFRK----- 258
FDE+ PR +LP L++ AGDP+ +EEPVYIEMVG++ R +
Sbjct: 176 FDESCPPGPSPRGGNLPL-QRLTRGSRVAGDPDVGAQEEPVYIEMVGDVFRGGGRSGGGL 234
Query: 259 -----------------EDDDQSEAVYEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPTV 301
D ++SEA+YEEMKYP+ ++ G+ + +S P
Sbjct: 235 AGPPLGGGGPTPPAGADSDSEESEAIYEEMKYPLPEEAGEGRANGPPPLTATSPPQQPHA 294
Query: 302 --PDLDFAKASV------PCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDES 353
P AS P K C+IPPPFPNLL HRPPLL FP A D
Sbjct: 295 LPPHAHRRPASALPSRRDGTPTKTTPCEIPPPFPNLLQHRPPLLAFPQAKSASRTPGD-- 352
Query: 354 PLTPLEVTKLPVLENVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSS 413
V++LPVL + K+PAG++P A PA
Sbjct: 353 -----GVSRLPVL---CHSKEPAGSTP------------------APQVPARERETPPPP 386
Query: 414 PPPPSTLYRTQSPHGYPKSHSTSPSPVSMGR 444
PPPP+ P G +SHST P G+
Sbjct: 387 PPPPAANLLLLGPSGRARSHSTPLPPQGSGQ 417
Score = 46.6 bits (109), Expect = 7e-05
Identities = 89/350 (25%), Positives = 128/350 (36%), Gaps = 80/350 (22%)
Query: 290 HSCSSQCATPTVPDLDFAKASVPCPPKGLLCDIPPPFPNLL---------SHRPPL---- 336
HS +TP P + + P PP PPP NLL SH PL
Sbjct: 362 HSKEPAGSTPA-PQVPARERETPPPPP------PPPAANLLLLGPSGRARSHSTPLPPQG 414
Query: 337 -------LVFPPAPVHCSPNSDESPLTPLEVTKL----PVLENVSYMKQPAGASPST--- 382
P + P + +P P L P + VSY + +T
Sbjct: 415 SGQPRGERELPNSHSMICPKAAGAPAAPPAPAALLPGPPKDKAVSYTMVYSAVKVTTHSV 474
Query: 383 LPSHVP---GHAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQSPHG----------Y 429
LP+ P G K EKE + G SS PP P SPHG +
Sbjct: 475 LPAGPPLGAGEPKTEKEISVLHGMLCT----SSRPPVPGKT----SPHGGAMGAAAGVLH 526
Query: 430 PKSHSTSPS--PVSMGRSLTPL--------SLKRPPPYDAVHSGSLSRSSPSVPHSTPRP 479
+ SP P LTPL LKRPP Y+++ +G + V +P
Sbjct: 527 HRGCLASPHSLPDPTVGPLTPLWTYPATAAGLKRPPAYESLKAGGVLNKGCGVGAPSPMV 586
Query: 480 VSQ------DGAKMVNAAVNTYGAAPGGSRSRTPTSPLEEL-TSLFSSGRSLLRKSSSGR 532
Q DG + + A+ G TP EE+ + F +G +L RK G
Sbjct: 587 KIQLQEQGTDGGAFASISCAHVIASAG-----TPEEEEEEVGAATFGAGWALQRKVLYGG 641
Query: 533 RSKEPAEKSTEELKVRSHSTEPLPKLDNKERGHHGASSSREPVKAQEWDG 582
R + +K + + + S E K++ ++R G +S PV++Q +G
Sbjct: 642 RKAKELDKVEDGARAWNGSAEGPGKVEREDR---GPGTSGIPVRSQGAEG 688
Score = 30.0 bits (66), Expect = 7.2
Identities = 53/229 (23%), Positives = 79/229 (34%), Gaps = 36/229 (15%)
Query: 375 PAGASPSTLPSH-VPGHAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQSPHGYPK-S 432
PAGA + S + K + A G A+ P L+++ PP Q PH P +
Sbjct: 247 PAGADSDSEESEAIYEEMKYPLPEEAGEGRANGPPPLTATSPP-------QQPHALPPHA 299
Query: 433 HSTSPSPVSMGRSLTPLSL---KRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQD-GAKMV 488
H S + R TP + PPP+ + L P + + S+ G +
Sbjct: 300 HRRPASALPSRRDGTPTKTTPCEIPPPFPNL----LQHRPPLLAFPQAKSASRTPGDGVS 355
Query: 489 NAAVNTYGAAPGGSRSRTPTSPLEELTSLFSS----GRSLLRKSSSGRRSKEPAEKSTEE 544
V + P GS + P P E + +LL SGR
Sbjct: 356 RLPVLCHSKEPAGS-TPAPQVPARERETPPPPPPPPAANLLLLGPSGR------------ 402
Query: 545 LKVRSHSTEPLPKLDNKERGHHGASSSREPVKAQEWDGTPGPPVVTSRL 593
RSHST P+ + RG +S + + PP + L
Sbjct: 403 --ARSHSTPLPPQGSGQPRGERELPNSHSMICPKAAGAPAAPPAPAALL 449
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 62.0 bits (149), Expect = 2e-09
Identities = 129/563 (22%), Positives = 183/563 (32%), Gaps = 94/563 (16%)
Query: 100 PAPQDRLPH------PCSSGFSVRSQSLH--------------SVGGTDDDSSCGSRRQP 139
PAP LPH P +S FSV +Q H S G+ S G P
Sbjct: 514 PAPPP-LPHREGFLGPPASRFSVGTQDSHTPPTPPTPTTSSSNSNSGSHSSSPAGPVSFP 572
Query: 140 PP------------------KPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPR- 180
PP P+ P L+ + ++ ++ R S +PR
Sbjct: 573 PPPYLARSIDPLPRPPSPAQNPQDPPLVPLTLALPPAPPSSCHQNTSGSFRRPESPRPRV 632
Query: 181 --PHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKKHGPRRTSLPRDSSLSQMGSPAGDP 238
P + E PPP P + E + GPR P Q PA
Sbjct: 633 SFPKTPEVGPG-PPPGPLSKAPQPVPPGVGE--LPARGPRLFDFPPTPLEDQFEEPA--- 686
Query: 239 EEEEPVYIEMVGNILR----DFRKEDDDQSEAVYEEMKYPI---FDDLGQDAKCDFDHHS 291
E + + + NI++ RKE++ Q + P+ F L D +
Sbjct: 687 --EFKILPDGLANIMKMLDESIRKEEEQQQHEAGVAPQPPLKEPFASLQSPFPTDTAPTT 744
Query: 292 CSSQCATPTVPDLDFAKASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSD 351
+ A T + K +PPP P L PP PP P SP S
Sbjct: 745 TAPAVAVTTTTTTTTTTTATQEEEKKPPPALPPP-PPLAKFPPPSQPQPPPPPPPSPAS- 802
Query: 352 ESPLTPLEVTKLPVLENVSYMKQPAGASPSTLPSHVPG--HAKLEKEQAAALGPASATPA 409
L + VLE Y + GA+ ST P +P ++ A AL P SA P+
Sbjct: 803 ------LLKSLASVLEGQKYCYRGTGAAVSTRPGPLPTTQYSPGPPSGATALPPTSAAPS 856
Query: 410 LSSSPPPPSTLYRTQSPHGYP----KSHSTSPSPVSMGRSLTPLSLKRPPPYD------- 458
SP P ++ S G P + P P M + P L PP
Sbjct: 857 AQGSPQPSASSSSQFSTSGGPWARERRAGEEPVPGPMTPTQPPPPLSLPPARSESEVLEE 916
Query: 459 -------AVHSGSLSRSSPSVPHSTPRPVSQDGAKMVNAA-----VNTYGAAPGGSRSRT 506
V S + P+ P T P +++ A A G + R
Sbjct: 917 ISRACETLVERVGRSATDPADPVDTAEPADSGTERLLPPAQAKEEAGGVAAVSGSCKRRQ 976
Query: 507 PTSPLEELTSLFSSGRSLLRKSSSGR---RSKEPAEKSTEELKVRSHSTEPLPKLDNKER 563
E + S+ R+ GR ++K P EKS L +E + + K R
Sbjct: 977 KEHQKEHRRHRRACKDSVGRRPREGRAKAKAKVPKEKSRRVLGNLDLQSEEIQGRE-KSR 1035
Query: 564 GHHGASSSREPVKAQEWDGTPGP 586
G +S +P A P P
Sbjct: 1036 PDLGGASKAKPPTAPAPPSAPAP 1058
Score = 34.3 bits (77), Expect = 0.38
Identities = 65/293 (22%), Positives = 94/293 (32%), Gaps = 49/293 (16%)
Query: 323 PPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLENVSYMKQPAGASPST 382
P P P +H P + P AP P + P S
Sbjct: 314 PYPAPAYTAHPPGHRLVPAAPPGPGP------------------------RPPGAESHGC 349
Query: 383 LPSHVPGHAKLEKEQA------AALGPASATPALSSSPPPPSTLYRTQSPHGYPKSHSTS 436
LP+ P + L + + +++ PA+ T + +P P L T + S +T
Sbjct: 350 LPATRPPGSDLRESRVQRSRMDSSVSPAATTACVPYAPSRPPGLPGTTTSSSSSSSSNTG 409
Query: 437 PSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNTYG 496
V + + P + H G L S+ HS+ +P GA AA
Sbjct: 410 LRGVEPNPGIPGADHYQTPALEVSHHGRLGPSA----HSSRKPFL--GAP---AATPHLS 460
Query: 497 AAPGGSRSRTPTSPLEELTSLFSSGRSLLRKSSSGRRSKEPAEKSTEELKVRSHSTEPLP 556
PG S P P L K + R ++E E E P P
Sbjct: 461 LPPGPSSPPPPPCP----RLLRPPPPPAWLKGPACRAAREDGEILEELFFGTEGPPRPAP 516
Query: 557 KLDNKERGHHGASSSREPVKAQEWDGTPGPPVVTSRLGRCSVSPTLLAGNHSS 609
G G +SR V Q+ P PP T+ S +G+HSS
Sbjct: 517 PPLPHREGFLGPPASRFSVGTQDSHTPPTPPTPTTS------SSNSNSGSHSS 563
Score = 34.3 bits (77), Expect = 0.38
Identities = 58/230 (25%), Positives = 75/230 (32%), Gaps = 42/230 (18%)
Query: 315 PKGLLCDIPPPFPNLLSHRPPLLVFPPA----PVHCSPNSDESPLT--------PLEVTK 362
P G PPP P LL RPP PPA P + D L P
Sbjct: 462 PPGPSSPPPPPCPRLL--RPPP---PPAWLKGPACRAAREDGEILEELFFGTEGPPRPAP 516
Query: 363 LPVLENVSYMKQPAGA-SPSTLPSHVP----------GHAKLEKEQAAALGPASATP--- 408
P+ ++ PA S T SH P ++ ++ GP S P
Sbjct: 517 PPLPHREGFLGPPASRFSVGTQDSHTPPTPPTPTTSSSNSNSGSHSSSPAGPVSFPPPPY 576
Query: 409 ---ALSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSL 465
++ P PPS Q P P + + P+P S T S +RP S
Sbjct: 577 LARSIDPLPRPPSPAQNPQDPPLVPLTLALPPAPPSSCHQNTSGSFRRP------ESPRP 630
Query: 466 SRSSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAP--GGSRSRTPTSPLEE 513
S P P P P +K G P G P +PLE+
Sbjct: 631 RVSFPKTPEVGPGPPPGPLSKAPQPVPPGVGELPARGPRLFDFPPTPLED 680
>gi|58530876 melanoma antigen family C, 1 [Homo sapiens]
Length = 1142
Score = 61.6 bits (148), Expect = 2e-09
Identities = 112/469 (23%), Positives = 179/469 (38%), Gaps = 56/469 (11%)
Query: 102 PQDRLPHPCSSGFSVRSQSLHSVGGTDDDSSCGSRRQPPPKPKRDPSTKLSTSSETVSST 161
PQ L P SS FS SL S+ Q P ++ SS + SST
Sbjct: 439 PQSPLQIPVSSSFSYTLLSLFQSSPERTHSTFEGFPQSP--------LQIPVSSSSSSST 490
Query: 162 AASKSGKTPERTEASAKPRPHSDEYSKKIPPPKPKRNPNTQLSTSFD--ETYIKKHGPRR 219
S +PE T+++ + P S + PP + Q+ S E + H +
Sbjct: 491 LLSLFQSSPECTQSTFEGFPQSPLQIPQSPPEGENTHSPLQIVPSLPEWEDSLSPHYFPQ 550
Query: 220 TSLPRDSSLSQMGSPAGDPEEEE-------PVYIEMVGNILRDFRKEDDDQSEAVYEEMK 272
+ + SLS P P+ E+ P + ++ + + Q E +
Sbjct: 551 SPPQGEDSLSPHYFPQSPPQGEDSLSPHYFPQSPQGEDSLSPHYFPQSPPQGEDSMSPLY 610
Query: 273 YPIFDDLGQDAKCDFDHHSCSSQCATPTVPDLDFAKASVPCPPKGLLCDIPPPFPNLLSH 332
+P G++ + +TP+ F ++S PP+G P P
Sbjct: 611 FPQSPLQGEEFQSSLQSPVSICSSSTPSSLPQSFPESS-QSPPEG-----PVQSPLHSPQ 664
Query: 333 RPPLLVFPPAPVHCSPNS---DESPLTPLEVTKLPV-----LENVSYMKQPAGASPSTLP 384
PP + +P+ SP S E L+PL++ + P+ L ++ + + P S P
Sbjct: 665 SPPEGMHSQSPLQ-SPESAPEGEDSLSPLQIPQSPLEGEDSLSSLHFPQSPPEWEDSLSP 723
Query: 385 SHVPGH-AKLEKEQAAALGPASATPALSSSPPPPSTLYRTQSPHGYPKSHSTSP--SPVS 441
H P + E Q++ P S + +S P S +SP P+ + SP PVS
Sbjct: 724 LHFPQFPPQGEDFQSSLQSPVSICSSSTSLSLPQSF---PESPQSPPEGPAQSPLQRPVS 780
Query: 442 MGRSLTPLSL-------KRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNT 494
S T SL + PP S L S P ST +SQ ++ V++
Sbjct: 781 SFFSYTLASLLQSSHESPQSPPEGPAQS-PLQSPVSSFPSSTSSSLSQ------SSPVSS 833
Query: 495 YGAAPGGSRSR-TPTSPLEELTSLFSSGRSLLRKSSSGRRSKEPAEKST 542
+ ++ S S+ +P SPL+ FSS SL S S P ++ T
Sbjct: 834 FPSSTSSSLSKSSPESPLQSPVISFSSSTSL---SPFSEESSSPVDEYT 879
Score = 32.0 bits (71), Expect = 1.9
Identities = 51/199 (25%), Positives = 73/199 (36%), Gaps = 48/199 (24%)
Query: 375 PAGASPSTLPSHVPGHAKLEKEQAAALGPASATPAL--SSSPPPPSTLYRTQSPHGYPKS 432
P PS L S E Q+ G S +P SSP TLY QSP +
Sbjct: 7 PTAGMPSLLQS------SSESPQSCPEGEDSQSPLQIPQSSPESDDTLYPLQSPQSRSEG 60
Query: 433 HSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQDGAKMVNAAV 492
+S L+RPP G S+S +P S+P +G +
Sbjct: 61 EDSSD------------PLQRPP------EGKDSQSPLQIPQSSP-----EGDDTQSPLQ 97
Query: 493 NTYGAAPGGSRSRTP-------------TSPLEELTSLFSSGRSLLRKSSSGRRSKEPAE 539
N+ ++P G S +P SPL+ S F S L SS ++ P E
Sbjct: 98 NSQ-SSPEGKDSLSPLEISQSPPEGEDVQSPLQNPASSFFSSALLSIFQSSPESTQSPFE 156
Query: 540 ---KSTEELKVRSHSTEPL 555
+S ++ V + S+ L
Sbjct: 157 GFPQSVLQIPVSAASSSTL 175
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 59.7 bits (143), Expect = 8e-09
Identities = 141/554 (25%), Positives = 198/554 (35%), Gaps = 121/554 (21%)
Query: 100 PAPQDRLPHPCSSG--FSVRSQSLHSVGGTDDDSSCGSRRQPPPKP--KRDPSTKLSTSS 155
PAP R P P + G SV S S HS + S +RR+P +R S LS+S+
Sbjct: 192 PAPSAR-PRPPTEGPRKSVSSASEHST----TEPSPAARRRPSAGGGLQRPASRSLSSSA 246
Query: 156 ETVSSTAAS--KSGKTPERTEASAKPRPHSDEYSK--KIPPPKPKRNP------NTQLST 205
+SS A S + TP ++P+P + + ++ PP+ P ++ L+T
Sbjct: 247 TPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLAT 306
Query: 206 SFDETYIKKHGPRRT-SLPRDSSLS-QMGSPA--GDPEEEEPVYIEMVGNILRDFRKEDD 261
++ P + P SSL+ Q+ +P P P ++ + +
Sbjct: 307 PSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTLPS------PPAT 360
Query: 262 DQSEAVYEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPTVPDLDFAKASVPCPPKGLLCD 321
S+A LG P L + +P PP L
Sbjct: 361 PPSQAT---------TSLGS--------------------PTLQATHSFLPSPPLSPLAT 391
Query: 322 IPPPFPNLLSHRPPLLV--FPPAPVHCSPNSDESPLTP--LEVTKL----------PVLE 367
PP P L+ PPL PPA SP + SP P L V L PV
Sbjct: 392 PPPQAPPALA-LPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQA 450
Query: 368 NVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPS-------TL 420
S P + +T PS P Q PAS + S++PPP + L
Sbjct: 451 PFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPL 510
Query: 421 YRTQSPHGYPKSHSTSP--------------SPVSMGRSLTPLSLKRPPPY-DAVHSGSL 465
+ P P + +T P +P S SL L PPP V + L
Sbjct: 511 QLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPL 570
Query: 466 SRSSPSVPHSTP-----RPVSQDGAKMVNAAVNTYGAAPG--GSRSRTPTSPLEELTSLF 518
+ PS P S RP + V+ T APG SR+P+S L
Sbjct: 571 LQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTL------- 623
Query: 519 SSGRSLLRKSSSGRRSKEPAEKSTEELKVRSHSTE----PLPKLDNKERGHHGASSSREP 574
SG L SSS A + EEL+ E P D + H A+ SR P
Sbjct: 624 -SGPDLAGHSSS-------ATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGP 675
Query: 575 VKAQEWDGTPGPPV 588
+ G PG P+
Sbjct: 676 APPLAFRGAPGAPL 689
Score = 41.6 bits (96), Expect = 0.002
Identities = 77/334 (23%), Positives = 111/334 (33%), Gaps = 68/334 (20%)
Query: 327 PNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLENVS---YMKQPAGASPSTL 383
P LL+ RPP PP PV TP + L V ++ G +T+
Sbjct: 22 PGLLTPRPPGSPRPPPPV-----------TPAALRVLGAAGAVGRKPLAERAGGIGGATI 70
Query: 384 PSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQSPHGYP--KSHSTSPSP-- 439
P P ++ PAS PA P + P P S +T P P
Sbjct: 71 PESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLG 130
Query: 440 -----VSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNT 494
+S ++ P A+ +G+ +S P TP P ++ V
Sbjct: 131 QKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTP-GTPSPAMARRSRAAGTEVGL 189
Query: 495 YGAAPGGSRSRTPTSPLEELTSLFSS------GRSLLRKSSSGRRSKEPAEKSTEEL--- 545
AP +R R PT + S S + R+ S+G + PA +S
Sbjct: 190 PRPAP-SARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATP 248
Query: 546 ---------------KVRSHSTEPLPKLDNKERGHHGASSSREP-VKAQEWDGTPG-PPV 588
+ +H ++P PK G + R P V D P P+
Sbjct: 249 LSSPARSGPSARGTPRAPAHPSQPKPK---------GLQALRPPQVTPPRKDAAPALGPL 299
Query: 589 VTSRLGRCSVS--------PTLLAGNHSSDLVLE 614
+S L S S PTL A HSS L +
Sbjct: 300 SSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQ 333
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 56.2 bits (134), Expect = 9e-08
Identities = 136/545 (24%), Positives = 187/545 (34%), Gaps = 133/545 (24%)
Query: 100 PAPQDRLPHPCSSG--FSVRSQSLHSVGGTDDDSSCGSRRQPPPKPKRDPSTK---LSTS 154
PAP R P P + G SV S S HS +P P +R PS +
Sbjct: 183 PAPSAR-PRPPTEGPRKSVSSASEHST------------TEPSPAARRRPSAGGGLQRPA 229
Query: 155 SETVSSTAASKSGKTPERTEASAKPRPHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKK 214
S ++SS+A S +P R+ SA+ P + + + PKPK ++
Sbjct: 230 SRSLSSSATPLS--SPARSGPSARGTPRAPAHPSQ---PKPKG--------------LQA 270
Query: 215 HGPRRTSLPRDSSLSQMG----SPAGDPEEEEPVYIEMVGNILRDFRKEDDDQSEAVYEE 270
P + + PR + +G SP P P + +
Sbjct: 271 LRPPQVTPPRKDAAPALGPLSSSPLATPSPSAP----------------PSPSAPPSLQT 314
Query: 271 MKYPIFDDLGQDAKCDFDHHSCSSQCATPTVPDLDFAKASVPCPPKGLLCDIPPPFPNLL 330
+ P Q ++ +PT L + +P PP L PP P L
Sbjct: 315 LPSPPATPPSQ----------ATTSLGSPT---LQATHSFLPSPPLSPLATPPPQAPPAL 361
Query: 331 SHRPPLLV--FPPAPVHCSPNSDESPLTP--LEVTKL----------PVLENVSYMKQPA 376
+ PPL PPA SP + SP P L V L PV S P
Sbjct: 362 A-LPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPP 420
Query: 377 GASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPS-------TLYRTQSPHGY 429
+ +T PS P Q PAS + S++PPP + L + P
Sbjct: 421 VSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQA 480
Query: 430 PKSHSTSP--------------SPVSMGRSLTPLSLKRPPPY-DAVHSGSLSRSSPSVPH 474
P + +T P +P S SL L PPP V + L + PS P
Sbjct: 481 PPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPA 540
Query: 475 STP-----RPVSQDGAKMVNAAVNTYGAAPG--GSRSRTPTSPLEELTSLFSSGRSLLRK 527
S RP + V+ T APG SR+P+S L SG L
Sbjct: 541 SPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTL--------SGPDLAGH 592
Query: 528 SSSGRRSKEPAEKSTEELKVRSHSTE----PLPKLDNKERGHHGASSSREPVKAQEWDGT 583
SSS A + EEL+ E P D + H A+ SR P + G
Sbjct: 593 SSS-------ATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGA 645
Query: 584 PGPPV 588
PG P+
Sbjct: 646 PGAPL 650
Score = 38.9 bits (89), Expect = 0.016
Identities = 64/261 (24%), Positives = 96/261 (36%), Gaps = 38/261 (14%)
Query: 327 PNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLENVS---YMKQPAGASPSTL 383
P LL+ RPP PP PV TP + L V ++ G +T+
Sbjct: 22 PGLLTPRPPGSPRPPPPV-----------TPAALRVLGAAGAVGRKPLAERAGGIGGATI 70
Query: 384 PSHVP--GHAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQSPHGYPKSHSTSPSP-- 439
P P G + + A+ G A PA ++SP P S+ R S +T P P
Sbjct: 71 PESAPRAGPTRTSRPPASGRG-ERAPPAKNTSPGPVSSPGRA--------SGTTRPGPLG 121
Query: 440 -----VSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNT 494
+S ++ P A+ +G+ +S P TP P ++ V
Sbjct: 122 QKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTP-GTPSPAMARRSRAAGTEVGL 180
Query: 495 YGAAPGGSRSRTPT-SPLEELTSLFSSGRSLLRKSSSGRRSKEPAEKSTEELKVRSHSTE 553
AP +R R PT P + ++S +S S S + RR + A + RS S+
Sbjct: 181 PRPAP-SARPRPPTEGPRKSVSS--ASEHSTTEPSPAARR-RPSAGGGLQRPASRSLSSS 236
Query: 554 PLPKLDNKERGHHGASSSREP 574
P G + R P
Sbjct: 237 ATPLSSPARSGPSARGTPRAP 257
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 56.2 bits (134), Expect = 9e-08
Identities = 101/460 (21%), Positives = 158/460 (34%), Gaps = 64/460 (13%)
Query: 140 PPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPRPHSDEYSKKIPPPKPKRNP 199
PP PK P+T + T + +P P P + + PP PK P
Sbjct: 1294 PPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPA------VTPPSPKGTP 1347
Query: 200 NTQLSTSFDE----TYIKKHGPRRTSLPRDSSLSQMGSPAGDPEEEEPVYIEMVGNILRD 255
+T + T K GP P ++ S G PA P + G +
Sbjct: 1348 TLPATTPSSKGGPTTPSSKEGPT----PPAATPSHKGGPAMTPPSPKR------GPAIPS 1397
Query: 256 FRKEDDDQSEAVYEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPTVPDLDFAKASVPCPP 315
+ + + K P + A P V + KA P
Sbjct: 1398 PKGDPTSPAVIPLSPKKAPATPVTREGAATP-----SKGDLTPPAVTPVSLKKAPATSAP 1452
Query: 316 KG-LLCDIPPPFPNLLSHRPPLLVFPPAP--VHCSPNSDESPLTP--LEVTKLPVLENVS 370
KG P L + PP PPAP V S + ++P TP + LP + S
Sbjct: 1453 KGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSS 1512
Query: 371 YMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASA-------------TPALSS---SP 414
+ PA S P P L K+ A L P A TPA+ + +P
Sbjct: 1513 PKEVPATPSSRRDPI-APTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAP 1571
Query: 415 PPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPH 474
PS+ + P P ++ +PSP + L P ++ P P +A +++ SP
Sbjct: 1572 ATPSSKEASSPPAVTPSTYKGAPSPKEL---LIPPAVTSPSPKEAPTPPAVTPPSPEKGP 1628
Query: 475 STPRPVSQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSGRSLLRKSSSGRRS 534
+TP P + V + S +PTSP S+ + + ++S G +
Sbjct: 1629 ATPAPKGTPTSPPVTPS----------SLKDSPTSP----ASVTCKMGATVPQASKGLPA 1674
Query: 535 KEPAEKSTEELKVRSHSTEPLPKLDNKERGHHGASSSREP 574
K+ E L + + P+ ++ SS+ P
Sbjct: 1675 KKGPTALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSP 1714
Score = 50.1 bits (118), Expect = 7e-06
Identities = 87/386 (22%), Positives = 125/386 (32%), Gaps = 36/386 (9%)
Query: 141 PKPKRDPSTKLSTSSETVSSTAAS--KSGKTPERTEASAKPRPHSDEYSKKIPPPKPKRN 198
P PK P+T + +S T++S K+ TP A P P PP PK
Sbjct: 894 PFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGG 953
Query: 199 PNTQLSTSFDETYIKKHGPRRTSLPRDSSLSQMGSPAGDPEEEEPVYIEMVGNILRDFRK 258
P T S + T P + P SP G P G K
Sbjct: 954 PATP-SPKWAPT------PPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPK 1006
Query: 259 EDDDQSEAVYEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPTVPDLDFAKASVPCP---P 315
K G A F + + ATP P + A+ P P P
Sbjct: 1007 GAPTPPAVTPPSPK-------GSPAATPFPKGASTPPAATPPSPK--GSPAATPLPKGAP 1057
Query: 316 KGLLCDIPPP-----FPNLLSHRPPLLVFPPAPVH--CSPNSDESPLTPLEVTKLPVLEN 368
+P P P+L P PP+P +P+ +P+ P P
Sbjct: 1058 TTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGL 1117
Query: 369 VSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALS---SSPPPPSTLYRTQS 425
+ + A +P+ P G + A PA+ P+ ++PPP +
Sbjct: 1118 ATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAA 1177
Query: 426 PHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHST-PRPVSQDG 484
PK +PSP G TP + P P + + S + +P+ P +T P P
Sbjct: 1178 TPPSPKGGLATPSP--KGAPTTPAATP-PSPKGGLATPS-PKGAPTTPAATPPSPKGGLA 1233
Query: 485 AKMVNAAVNTYGAAPGGSRSRTPTSP 510
A T A P + T P
Sbjct: 1234 TPSPKGAPTTPAATPPSPKGGPATPP 1259
Score = 45.8 bits (107), Expect = 1e-04
Identities = 47/168 (27%), Positives = 65/168 (38%), Gaps = 20/168 (11%)
Query: 340 PPAPVHCSPNSDESPLTPLEVTKLPVLENVSYMKQPAGASPSTLPSHVPGHAKLEKEQAA 399
PP+P S +PL+P VT P K+ S LP G A +QA
Sbjct: 858 PPSPKGAPTPSAVTPLSPKGVTLPP--------KETPTPSVVNLPFPKEGPATPAPKQAP 909
Query: 400 ALGPASATPALSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDA 459
AL S++P + + P P + + SP G P + +P P G TP P P
Sbjct: 910 ALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATP-PSPKGGPATPSPKWAPTP--- 965
Query: 460 VHSGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSRSRTP 507
++P P P S GA AA T + GG + +P
Sbjct: 966 ------PAATPPSPKGGPATPSPKGAPTPPAA--TPPSPKGGPATPSP 1005
Score = 43.9 bits (102), Expect = 5e-04
Identities = 71/305 (23%), Positives = 107/305 (35%), Gaps = 30/305 (9%)
Query: 298 TPTVPDLDFA---KASVPCPPKGLLCDIPP---PFPNLLSHRPPLLVFP------PAPVH 345
+PT P A A P PKG+ +PP P P++++ L FP PAP
Sbjct: 855 SPTPPSPKGAPTPSAVTPLSPKGVT--LPPKETPTPSVVN-----LPFPKEGPATPAPKQ 907
Query: 346 CSPNSDESPLTPLEVTKLPVLENVSYMKQPAGAS--PSTLPSHVPGHAKLEKEQAAALGP 403
+P + +P + P + + P GA P+ P G + A P
Sbjct: 908 -APALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPP 966
Query: 404 ASATPALSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSG 463
A+ P+ P PS P P S P+ S + TP ++ P P + +
Sbjct: 967 AATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAAT 1026
Query: 464 SLSRSSPSVPHST-PRPVSQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSGR 522
+ + + P +T P P A + T AA S P +P SL G
Sbjct: 1027 PFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATP-----SL--KGA 1079
Query: 523 SLLRKSSSGRRSKEPAEKSTEELKVRSHSTEPLPKLDNKERGHHGASSSREPVKAQEWDG 582
++ PA S + + +T P PK H GA ++ G
Sbjct: 1080 PTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGG 1139
Query: 583 TPGPP 587
PP
Sbjct: 1140 LATPP 1144
Score = 41.2 bits (95), Expect = 0.003
Identities = 84/355 (23%), Positives = 107/355 (30%), Gaps = 50/355 (14%)
Query: 140 PPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPRPHSDEYSKKIPPPKPKRNP 199
PP PK P+T + T + P A P P + PP PK +P
Sbjct: 970 PPSPKGGPATPSPKGAPTPPAATP------PSPKGGPATPSPKGAPTPPAVTPPSPKGSP 1023
Query: 200 NTQLSTSFDETYIKKHGPRRTSLPRDSSL-SQMGSPAGDPEEEEPVYIEMVGNILRDFRK 258
+T F P+ S P ++ S GSPA P + G
Sbjct: 1024 ---AATPF---------PKGASTPPAATPPSPKGSPAATPLPK--------GAPTTPAAT 1063
Query: 259 EDDDQSEAVYEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPTVPDLDFAKASVPCPPKGL 318
+ +K G S ATP+ A+ P PKG
Sbjct: 1064 LPSPKGGPATPSLK-------GAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGG 1116
Query: 319 LCDIP-----------PPFPNLLSHRPPLLVFP--PAPVHCSPNSDESPLTPLEVTKLPV 365
L P PP P PP P PA SP + P P
Sbjct: 1117 LATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPA 1176
Query: 366 LENVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQS 425
S A SP P+ K A P A +++PP P T S
Sbjct: 1177 ATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPS 1236
Query: 426 PHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPH-STPRP 479
P G P + + +P P G TP P P A SL + PH P P
Sbjct: 1237 PKGAPTTPAATP-PSPKGGPATPPPKGAPTP-PAATPPSLKGGLATPPHKGAPNP 1289
Score = 36.2 bits (82), Expect = 0.10
Identities = 58/252 (23%), Positives = 79/252 (31%), Gaps = 41/252 (16%)
Query: 297 ATPTVPDLDFAKASVPCPPKGLLCDIPP-------------PFPNLLSHRPPLLVFPPAP 343
ATP A+ P PKG L PP P L + P PA
Sbjct: 1141 ATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAA 1200
Query: 344 VH-------CSPNSDESPLTPLEVTKLPVLENVSYMKQPAGASPSTLPSHVPGHAKLEKE 396
+P+ +P TP P + + A +P+ P G
Sbjct: 1201 TPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPP 1260
Query: 397 QAAALGPASATPALSS----------------SPPPPSTLYRTQSPHGYPKSHSTSPSPV 440
+ A PA+ P+L +PP P T P G P + +P P
Sbjct: 1261 KGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATP-PS 1319
Query: 441 SMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAPG 500
G TP P P AV S + +P++P +TP A P
Sbjct: 1320 PKGSPGTPPPKGAPTP-PAVTPPS-PKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPS 1377
Query: 501 --GSRSRTPTSP 510
G + TP SP
Sbjct: 1378 HKGGPAMTPPSP 1389
Score = 35.4 bits (80), Expect = 0.17
Identities = 41/157 (26%), Positives = 57/157 (36%), Gaps = 32/157 (20%)
Query: 340 PPAPVHCSPNSDESPL-----------------TPLEVTKLPVLENVSYMKQPAGASPST 382
P P CSP + PL TPLEV P ++ S P G +P
Sbjct: 43 PTLPPPCSPAPQQCPLSAANQASPFPSPSTIASTPLEV---PFPQSSSGTALPLGTAPEA 99
Query: 383 LPSHVPGHAKLEKEQAAALGPASATPALS-SSPPPPSTLYRTQSPHGYPKSHSTSPSPVS 441
P+ +P +GP + AL+ +SP TL T S + +P V
Sbjct: 100 -PTFLPN----------LIGPPISPAALALASPMIAPTLKGTPSSSAPLALVALAPHSVQ 148
Query: 442 MGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPR 478
+ P L PP SGS+ S + S P+
Sbjct: 149 KSSAFPPNLLTSPPSVAVAESGSVITLSAPIAPSEPK 185
Score = 35.4 bits (80), Expect = 0.17
Identities = 59/249 (23%), Positives = 89/249 (35%), Gaps = 36/249 (14%)
Query: 290 HSCSSQCATPTVPDLDFAKASVPCPPKGLLCDIPPPFPNL--LSHRPPLLVFPPAPVHCS 347
++C+ P++ + S PP G PP + +SH L +P C
Sbjct: 716 NTCAPLATLVLAPEIPKSVPSPSLPPAGT----PPGTKKVDGISHTSALAPVASSPKECP 771
Query: 348 PN--------SDESPLTPLEVTKLPVLENVS-YMKQP----AGASPST----LPSHV-PG 389
S + LT L + P+ +VS K+P A P T L S V P
Sbjct: 772 TEDSGASATASSKGTLTYLADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPV 831
Query: 390 HAKLEKEQAAALGPASATPALSSSPPPPS-------TLYRTQSPHGYPKSHSTSPSPVSM 442
A E + + + +PA + SP PPS + SP G +P+P +
Sbjct: 832 EASFLPENSLSFQGSKDSPATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVV 891
Query: 443 GRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAP--- 499
P P A + S++ SSP +TP P + A A P
Sbjct: 892 NLPFPKEGPATPAPKQA-PALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSP 950
Query: 500 -GGSRSRTP 507
GG + +P
Sbjct: 951 KGGPATPSP 959
Score = 35.4 bits (80), Expect = 0.17
Identities = 118/533 (22%), Positives = 164/533 (30%), Gaps = 111/533 (20%)
Query: 134 GSRRQPPPKPKRDP---STKLSTSSETVSSTAASKSGKTPERTEASAKPR------PHSD 184
G PP PKR P S K +S V + K+ TP E +A P P
Sbjct: 1380 GGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVT 1439
Query: 185 EYSKKIPPPK--PKRNPNTQLSTSFDETYIKKHGPRRTSLPRDSSLSQMGSPAGDPEEEE 242
S K P PK P T S+ D T P P ++ SP P
Sbjct: 1440 PVSLKKAPATSAPKGGPATP-SSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPA 1498
Query: 243 PVYIEMVGNILRDFRKE---------DDDQSEAVYEEMKYPIFDDLGQDAKCDFDHHSCS 293
P+ + ++ KE D A K P L +
Sbjct: 1499 PMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPA--TLAPKEALIPPAMTVP 1556
Query: 294 SQCATPTVPDLDFAKASVPCPPKGLLCDIPP---PFPNLLSHRPPLLVFPPAPVHCSPNS 350
S TP +P P P PP P + P L+ PPA SP
Sbjct: 1557 SPKKTPAIP----TPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKE 1612
Query: 351 DESP--LTPLEVTKLPVLENVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPAS--- 405
+P +TP K P +PS+L A + + A + AS
Sbjct: 1613 APTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQASKGL 1672
Query: 406 -------ATPALSSSPPPPSTLYRTQSPHGYP---KSHSTSP----SPVSMGRSLTPLSL 451
A + +P P ST T P KS +TSP P + S PLS
Sbjct: 1673 PAKKGPTALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSPPICPDPSAKNGSKGPLST 1732
Query: 452 KRPPPY--------------DAVHSGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNTYGA 497
P P DA HS + P STP + + + A
Sbjct: 1733 VAPAPLLPVQKDSSKTAKGKDASHSPKGPLAPPESKASTPLTAAAFEKVLPKPESASVSA 1792
Query: 498 APG--------------------------GSRSRTPTSPL-----EELTSLF-----SSG 521
AP G +P+ PL +EL L S G
Sbjct: 1793 APSPPVSLPLAPSPVPTLPPKQQFLPSSPGLVLESPSKPLAPADEDELLPLIPPEPISGG 1852
Query: 522 ---RSLLRKSSSGRRS---------KEPAEKSTEELKVRSHSTEPLPKLDNKE 562
+S+L + + + K+P K+ + S S E +P+L+ ++
Sbjct: 1853 VPFQSVLVNMPTPKSAGIPVPTPSAKQPVTKNNKGSGTESDSDESVPELEEQD 1905
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 56.2 bits (134), Expect = 9e-08
Identities = 120/533 (22%), Positives = 179/533 (33%), Gaps = 101/533 (18%)
Query: 102 PQDRLPHP-----CSSGFSVRSQSLHSVGGTDDDSSCGSRRQPPPKPKRDPSTKLSTSSE 156
P R+P P S R +S S+ G+ SS R PP KP + TSS
Sbjct: 328 PPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPK------RTSSP 381
Query: 157 TVSSTAASKSGKTPERTEASAKPRPHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKKHG 216
+ S S P R + P PPPK + +P Q S ++ +
Sbjct: 382 PRKTRRLSPSASPPRRRHRPSPP---------ATPPPKTRHSPTPQQSNRTRKSRVSV-S 431
Query: 217 PRRTS--LPRDSSLSQMGSPAGDPEEEEPVYIEMVGNILRDFRKEDDDQSEAVYEEMKYP 274
P RTS + + + SP+ P+ + E + D Q Y
Sbjct: 432 PGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRRQNQQ 491
Query: 275 IFDDLGQDAKCDFD----------------HHSCSSQCA------------------TPT 300
D G + + + HS S + +P+
Sbjct: 492 SSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPS 551
Query: 301 VPDLDFAKASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDE--SPLTPL 358
P ++ P PP P P P + PP P+P SP SP P
Sbjct: 552 PPPTRRRRSPSPAPPPRRR-RTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPP- 609
Query: 359 EVTKLPVLENVSYMKQP-AGASPSTLPSHVPGHAKLEKEQAAALGPASATPALS------ 411
P S P ASPS P H+ K++++ + +P+LS
Sbjct: 610 -----PKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPV-TKRRSPSLSSKHRKG 663
Query: 412 SSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPS 471
SSP + R+ P+ K HS SP P + S +P PP S R SPS
Sbjct: 664 SSPSRSTREARSPQPN---KRHSPSPRPRAPQTSSSP-----PPVRRGASSSPQRRQSPS 715
Query: 472 VP-------HSTPRP--------VSQDGAKMVNAAVNTYGA-APGGSRSRTPTSPLE-EL 514
TP P S + V+++ + G+ P + P SP++ +
Sbjct: 716 PSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQS 775
Query: 515 TSLFSSGRSLLRKSSSGRRSKEPAEKSTEE--LKVRSHSTEPLPKLDNKERGH 565
S S ++K+ S S P S +E K + + K D K + H
Sbjct: 776 PSTNWSPAVPVKKAKSPTPSPSPPRNSDQEGGGKKKKKKKDKKHKKDKKHKKH 828
Score = 43.5 bits (101), Expect = 6e-04
Identities = 105/463 (22%), Positives = 152/463 (32%), Gaps = 78/463 (16%)
Query: 137 RQPPPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEA-SAKPRPHSDEYSKKIPPPKP 195
R P + R PS + SS S S RT++ S P P E + ++P P
Sbjct: 170 RSPRRRKSRSPSPR-RRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSV 228
Query: 196 K-RNPNTQLSTSFDETYIKKHGPRRTSLPRDSSLSQMGSPAGDPEEEEPVYIEMVGNILR 254
K + P+ Q +TS S + ++ P PE +EP
Sbjct: 229 KVKEPSVQEATS------------------TSDILKVPKPEPIPEPKEP----------- 259
Query: 255 DFRKEDDDQSEAVYEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPTVPDLDFAKASVPCP 314
E + + E E+ + + S+ + T P S
Sbjct: 260 --SPEKNSKKEKEKEKTR-------PRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYS 310
Query: 315 PKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLENVSYMKQ 374
P+ P P R P PP P H S PV
Sbjct: 311 PRRRPSPRRRPSPR---RRTPPRRMPPPPRHRRSRS-------------PVRRRRRSSAS 354
Query: 375 PAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQSPHGYPKSHS 434
+G+S S+ S K ++ ++ P T LS S PP +R P P
Sbjct: 355 LSGSSSSSSSSRSRSPPKKPPKRTSS--PPRKTRRLSPSASPPRRRHRPSPPATPPPKTR 412
Query: 435 TSPSPVSMGR---SLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQDGAKMVNAA 491
SP+P R S +S R H G+ R SPS P+P + ++
Sbjct: 413 HSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPS---PAPKPRKVELSESEEDK 469
Query: 492 VNTYGAAPGGSRSRTPTSPLEELTSLFSSGRSLLRKSSSGRRSKEPAEKSTEELKVRSH- 550
AA + R ++ +S SG S SS R K K+ E + R H
Sbjct: 470 GGKMAAADSVQQRRQYRRQNQQSSS--DSGSS---SSSEDERPKRSHVKNGEVGRRRRHS 524
Query: 551 ---STEPLPKLDNKE---RGHHGASSSREPVKAQEWDGTPGPP 587
S P P+ KE RG S S P + + +P PP
Sbjct: 525 PSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRR-SPSPAPP 566
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 54.3 bits (129), Expect = 4e-07
Identities = 113/472 (23%), Positives = 162/472 (34%), Gaps = 56/472 (11%)
Query: 140 PPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPRPHSDEYSKKIPPPKPKRNP 199
PP + P++ + E + S A P +T ++ PH + + P P P + P
Sbjct: 520 PPSLQTPPASLTTPPLENLPSLAPP-----PLQTASAPLTTPHLE--TPPCPAPCPLQAP 572
Query: 200 NTQLSTSFDETYIKKHGPRRTSLPRDSSLSQMG------SPAGDPEEEEPVYIEMVGNIL 253
+ L+T ET P + P +S G SP P + P + L
Sbjct: 573 PSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLA-----L 627
Query: 254 RDFRKEDDDQSEAVYEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPTVPDLDFAKASVPC 313
+ + + P A H + + P P + +
Sbjct: 628 PPLQAPPSPPASPPLSPLATP-----SPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPAS 682
Query: 314 PPKGLLCDIPPPFPNLLSHRPPLLV--FPPAPVHCSPNSDESPLTPLEVTKLPVLENVSY 371
PP P P L+ PPL V PPA SP++ P P + P+ S
Sbjct: 683 PPVSPSATPPSQAPPSLA-APPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSP 741
Query: 372 MKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQSP-HGYP 430
P + +T P VP Q PAS + + PPP + P P
Sbjct: 742 PASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALP 801
Query: 431 KSHSTSP--SPVSMGRSLTPLSLKRPPPY-DAVHSGSLSRSSPSVPHSTP-----RPVSQ 482
++ P +P S SL L PPP V + L + PS P S RP +
Sbjct: 802 SPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTP 861
Query: 483 DGAKMVNAAVNTYGAAPG--GSRSRTPTSPLEELTSLFSSGRSLLRKSSSGRRSKEPAEK 540
V+ T APG SR+P+S L SG L SSS A
Sbjct: 862 GPDTSVSGPRLTLALAPGPPPPPSRSPSSTL--------SGPDLAGHSSS-------ATS 906
Query: 541 STEELKVRSHSTE----PLPKLDNKERGHHGASSSREPVKAQEWDGTPGPPV 588
+ EEL+ E P D + H A+ SR P + G PG P+
Sbjct: 907 TPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPL 958
Score = 50.1 bits (118), Expect = 7e-06
Identities = 92/382 (24%), Positives = 134/382 (35%), Gaps = 45/382 (11%)
Query: 140 PPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPR------PHSDEYSKKIPPP 193
PP P PS + S + A S TP + PHS PP
Sbjct: 345 PPSPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPP 404
Query: 194 KPKRNPNTQLSTSFDETYIKKHGPRRTSLPRDS--SLSQMGSPAGDPEEEEPVYIEMVGN 251
P + Q +TS ++ T PR + SL+ PA P + P+ +
Sbjct: 405 SPLALSSLQATTSLGSPTLQATHSFLTMSPRQTQASLTSPSRPASTPPDSPPLQAPLS-- 462
Query: 252 ILRDFRKEDDDQSEAVYEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPTVPDLD----FA 307
L S AV + P+ Q A HS + ++ +P L+ A
Sbjct: 463 -LPASPPLQTSLSPAV-SPLSSPLTIHPLQ-ALSSLASHSPQAPLSSLIMPPLETQSSLA 519
Query: 308 KASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLE 367
S+ PP L PP NL S PP L AP+ +P+ + P P+
Sbjct: 520 PPSLQTPPASLTT---PPLENLPSLAPPPLQTASAPL-TTPHLETPPCP----APCPLQA 571
Query: 368 NVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQSPH 427
S + P +PS++ + P QA PA A+P L P PP + T P
Sbjct: 572 PPSPLTTPPPETPSSIATPPP--------QAP---PALASPPLQGLPSPPLSPLATPPPQ 620
Query: 428 GYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQDGAKM 487
+P +++ P S PP + + S + H P S +
Sbjct: 621 --------APPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPP 672
Query: 488 VNAAVNTYGAAPGGSRSRTPTS 509
V A + A+P S S TP S
Sbjct: 673 VQAPFSP-PASPPVSPSATPPS 693
Score = 42.7 bits (99), Expect = 0.001
Identities = 82/301 (27%), Positives = 107/301 (35%), Gaps = 61/301 (20%)
Query: 298 TPTVPDLDFAKASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTP 357
TP P A S P PKGL PP P L P+ SP + SP +
Sbjct: 262 TPRAP----AHPSQP-KPKGLQALRPPQVTPPRKDAAPAL----GPLSSSPLATPSP-SG 311
Query: 358 LEVTKLPVLENVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPP 417
+ +P +N A P+TLP P L A SA P+L + P PP
Sbjct: 312 TKARPVPPPDNA------ATPLPATLPPSPP----LATPLPLAPPSPSAPPSLQTLPSPP 361
Query: 418 ST------LYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRP----------------- 454
+T T P P S T P P+ + SLT SL+ P
Sbjct: 362 ATPPSQAPPSMTTPPMQAPPSLQTIP-PIQVPHSLTSPSLQAPPSPLALSSLQATTSLGS 420
Query: 455 PPYDAVHS--------GSLSRSSPSVPHSTP--RPVSQDGAKMVNAAVNTYGAAPGGSRS 504
P A HS S +SPS P STP P Q + + +P S
Sbjct: 421 PTLQATHSFLTMSPRQTQASLTSPSRPASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPL 480
Query: 505 RTPTS--PLEELTSLFSSG-----RSLLRKSSSGRRSKEPAEKSTEELKVRSHSTEPLPK 557
+P + PL+ L+SL S SL+ + S P T + + E LP
Sbjct: 481 SSPLTIHPLQALSSLASHSPQAPLSSLIMPPLETQSSLAPPSLQTPPASLTTPPLENLPS 540
Query: 558 L 558
L
Sbjct: 541 L 541
Score = 40.4 bits (93), Expect = 0.005
Identities = 61/261 (23%), Positives = 90/261 (34%), Gaps = 29/261 (11%)
Query: 327 PNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLENVS---YMKQPAGASPSTL 383
P LL+ RPP PP PV TP + L V ++ G +T+
Sbjct: 22 PGLLTPRPPGSPRPPPPV-----------TPAALRVLGAAGAVGRKPLAERAGGIGGATI 70
Query: 384 PSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQSPHGYP--KSHSTSPSP-- 439
P P ++ PAS PA P + P P S +T P P
Sbjct: 71 PESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLG 130
Query: 440 -----VSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNT 494
+S ++ P A+ +G+ +S P TP P ++ V
Sbjct: 131 QKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTP-GTPSPAMARRSRAAGTEVGL 189
Query: 495 YGAAPGGSRSRTPT-SPLEELTSLFSSGRSLLRKSSSGRRSKEPAEKSTEELKVRSHSTE 553
AP +R R PT P + ++S +S S S + RR + A + RS S+
Sbjct: 190 PRPAP-SARPRPPTEGPRKSVSS--ASEHSTTEPSPAARR-RPSAGGGLQRPASRSLSSS 245
Query: 554 PLPKLDNKERGHHGASSSREP 574
P G + R P
Sbjct: 246 ATPLSSPARSGPSARGTPRAP 266
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 53.5 bits (127), Expect = 6e-07
Identities = 86/321 (26%), Positives = 118/321 (36%), Gaps = 47/321 (14%)
Query: 291 SCSSQCATPTVP---DLDFAKASVPCPPKG---LLCDIPPPFPNLLSHRPPLLVFPPAPV 344
S S ATP P A P PP +L P P L S + P+ V P+
Sbjct: 1578 SASQALATPLAPMAAPQTAILAPSPAPPLAPLPVLAPSPGAAPVLASSQTPVPVMAPSST 1637
Query: 345 HCSPNSDESPLTPLEVTKLPVLENVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPA 404
+ + SP+ PVL S PS LPS Q AL PA
Sbjct: 1638 PGTSLASASPVP----APTPVLAPSSTQTMLPAPVPSPLPSPA-------STQTLALAPA 1686
Query: 405 SATPALSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTP-----LSLKRPPPYDA 459
A P L S P + T +P G + + S +P S SL P LSL PP
Sbjct: 1687 LA-PTLGGSSPSQTLSLGTGNPQGPFPTQTLSLTPAS---SLVPTPAQTLSLAPGPPLGP 1742
Query: 460 VHSGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFS 519
+ SL+ + P P S P + A+ + AP ++ T SP T +
Sbjct: 1743 TQTLSLAPAPPLAPASPVGPAPAHTLTLAPASSSASLLAPASVQTLT-LSPAPVPTLGPA 1801
Query: 520 SGRSLLRKSSSGRRSKEPAEKSTEELKVRSHSTEPLPKLDNKERGHHGASSSREPVKAQE 579
+ ++L +S ++ PA +++ L V + PLP SR PV E
Sbjct: 1802 AAQTLALAPAS---TQSPASQAS-SLVVSASGAAPLPV----------TMVSRLPVSKDE 1847
Query: 580 WD------GTPGPPVVTSRLG 594
D G P PP + G
Sbjct: 1848 PDTLTLRSGPPSPPSTATSFG 1868
Score = 41.2 bits (95), Expect = 0.003
Identities = 76/319 (23%), Positives = 112/319 (35%), Gaps = 51/319 (15%)
Query: 320 CDIPPPFPNLLSHRPP----LLVFPPAPVHCSPNSDESPLTPLE--VTKLPV-LENVSYM 372
C PP +H PP LV P +P+ P P P+ VT LP+ L + +
Sbjct: 2499 CTPPPACTPPPAHTPPPAQTCLVTPSSPLLLGP-----PSVPISASVTNLPLGLRPEAEL 2553
Query: 373 KQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPA-----------LSSSPPPPS-TL 420
A ASP +L + A E + + P P LS +P PS TL
Sbjct: 2554 CAQALASPESL--ELASVASSETSSLSLVPPKDLLPVAVEILPVSEKNLSLTPSAPSLTL 2611
Query: 421 YRTQSPHGYPKSHSTSPSPVSM-----------------GRSLTPLSLKRPPPYDAVHSG 463
P+G + S ++ G L P + P + + +
Sbjct: 2612 EAGSIPNGQEQEAPDSAEGTTLTVLPEGEELPLCVSESNGLELPPSAASDEPLQEPLEAD 2671
Query: 464 SLSR--SSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSG 521
S + P S+P Q+ AA +T +A +P P TS
Sbjct: 2672 RTSEELTEAKTPTSSPEK-PQELVTAEVAAPSTSSSATSSPEGPSPARPPRRRTSADVE- 2729
Query: 522 RSLLRKSSSGRRSKEPAEKSTEELKVRSHSTEPLPKLDNKERGHHGASSSREPVKAQEWD 581
+R +GR + P K +L R + +L + R GA+S+ P E
Sbjct: 2730 ---IRGQGTGRPGQPPGPKVLRKLPGRLVTVVEEKELVRRRRQQRGAASTLVP-GVSETS 2785
Query: 582 GTPGPPVVTSRLGRCSVSP 600
+PG P V S G S P
Sbjct: 2786 ASPGSPSVRSMSGPESSPP 2804
Score = 39.7 bits (91), Expect = 0.009
Identities = 79/319 (24%), Positives = 122/319 (38%), Gaps = 58/319 (18%)
Query: 302 PDLDFAKASVPCPP--KGLLCDIPPPFPNLLSHRP---PLLVFPPAPVHCS---PNSDES 353
P L A+A +P P + LL + P P + + P PL + P V S P S
Sbjct: 1356 PTLGTARAPMPTPTLVRPLLKLVHSPSPEVSASAPGAAPLTISSPLHVPSSLPGPASSPM 1415
Query: 354 PLTPLEVTKLPVLENVSYMKQPAGAS-----PSTLPSHVPGHAKLEKEQAAAL-----GP 403
P+ PV VS P +S P+TLP+ P A L +A L GP
Sbjct: 1416 PIPNSSPLASPVSSTVSV---PLSSSLPISVPTTLPA--PASAPLTIPISAPLTVSASGP 1470
Query: 404 A---SATPALS----SSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTP-LSLKRPP 455
A S TP L+ ++P PPS P S S S +++G + P LS + P
Sbjct: 1471 ALLTSVTPPLAPVVPAAPGPPSLA---------PSGASPSASALTLGLATAPSLSSSQTP 1521
Query: 456 PYDAVHSGSLSRSSPSVP--HSTPRPVSQDGAKMVNAAVNTYGAAPGGSRSRTP-TSPLE 512
H L+ +S VP +ST P +A + + +AP + ++ +P
Sbjct: 1522 G----HPLLLAPTSSHVPGLNSTVAPACSPVLVPASALASPFPSAPNPAPAQASLLAPAS 1577
Query: 513 ELTSLFSSGRSLLRKSSSGRRSKEPAEKSTEELKVRSHSTEPLPKLDNKERGHHGASSSR 572
+ ++ + + + + PA PLP L +SS+
Sbjct: 1578 SASQALATPLAPMAAPQTAILAPSPAP-----------PLAPLPVLAPSPGAAPVLASSQ 1626
Query: 573 EPVKAQEWDGTPGPPVVTS 591
PV TPG + ++
Sbjct: 1627 TPVPVMAPSSTPGTSLASA 1645
Score = 38.9 bits (89), Expect = 0.016
Identities = 76/304 (25%), Positives = 103/304 (33%), Gaps = 54/304 (17%)
Query: 297 ATPTVPDLDFAKASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCS-PNSDESPL 355
+T T P A+ VP P P P P S + P PV P S +P+
Sbjct: 2422 STTTPPRCSPARERVPRPA-------PRPRPTPASAPAAIPALVPVPVSAPVPISAPNPI 2474
Query: 356 TPLEVTKLPVLENVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPP 415
T L V LP S + P +SP+ P P + TP + +PP
Sbjct: 2475 TILPVHILPSPPPPSQI--PPCSSPACTP------------------PPACTPPPAHTPP 2514
Query: 416 PPSTLYRTQS------PHGYPKSHSTSPSPVSM--GRSLTPLSLKRPPPYDAVHSGSLSR 467
P T T S P P S S + P+ + L +L P + S
Sbjct: 2515 PAQTCLVTPSSPLLLGPPSVPISASVTNLPLGLRPEAELCAQALASPESLELASVASSET 2574
Query: 468 SSPS-VPHS-------TPRPVSQDGAKMVNAAVN---TYGAAPGGSRSRTPTSPLEELTS 516
SS S VP PVS+ + +A + G+ P G P S +
Sbjct: 2575 SSLSLVPPKDLLPVAVEILPVSEKNLSLTPSAPSLTLEAGSIPNGQEQEAPDSAEGTTLT 2634
Query: 517 LFSSGRSL-LRKSSSGRRSKEPAEKSTEELKVRSHSTEPLPKLDNKERGHHGASSSREPV 575
+ G L L S S P+ S E L+ EPL E + + P
Sbjct: 2635 VLPEGEELPLCVSESNGLELPPSAASDEPLQ------EPLEADRTSEELTEAKTPTSSPE 2688
Query: 576 KAQE 579
K QE
Sbjct: 2689 KPQE 2692
Score = 33.1 bits (74), Expect = 0.85
Identities = 56/217 (25%), Positives = 73/217 (33%), Gaps = 10/217 (4%)
Query: 297 ATPTVPDLDFAKASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPL- 355
A P P L + AS L P + + PLL+ P + NS +P
Sbjct: 1486 AAPGPPSLAPSGASPSASALTLGLATAPSLSSSQTPGHPLLLAPTSSHVPGLNSTVAPAC 1545
Query: 356 TPLEVTKLPVLENVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPP 415
+P+ V + PA A S L L A P +A A S +PP
Sbjct: 1546 SPVLVPASALASPFPSAPNPAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAPP 1605
Query: 416 PPSTLYRTQSPHGYP-KSHSTSPSPVSMGRSLTPLSLKR----PPPYDAVHSGSLSRSSP 470
SP P + S +P PV S SL P P + S P
Sbjct: 1606 LAPLPVLAPSPGAAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVLAPSSTQTMLP 1665
Query: 471 S-VPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSRSRT 506
+ VP P P S + A T G G S S+T
Sbjct: 1666 APVPSPLPSPASTQTLALAPALAPTLG---GSSPSQT 1699
Score = 30.8 bits (68), Expect = 4.2
Identities = 50/187 (26%), Positives = 64/187 (34%), Gaps = 17/187 (9%)
Query: 341 PAPVHCSPNSDESPLTPLEVTKLPVLENVSY------MKQPAGASPSTLPSHVPGHAKLE 394
P PV N P+ E + V+ N ++ P G S P+ P L
Sbjct: 987 PKPVKMKVNRMLQPVPKQEGRTVVVVNNPRAPLGPVPVRPPPGPELSAQPTPGPVPQVLP 1046
Query: 395 KEQAAALGPASATPALSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTP---LSL 451
+ PA +S PP P L Q G SP V G S P LSL
Sbjct: 1047 ASLMVSASPAGPPLIPASRPPGPVLLPPLQPNSGSLPQVLPSPLGVLSGTSRPPTPTLSL 1106
Query: 452 KRPPP-----YDAVHSGSLSRSSP-SVP--HSTPRPVSQDGAKMVNAAVNTYGAAPGGSR 503
K PP A GS S P +VP ++ P + + A T AP +
Sbjct: 1107 KPTPPAPVRLSPAPPPGSSSLLKPLTVPPGYTFPPAAATTTSTTTATATTTAVPAPTPAP 1166
Query: 504 SRTPTSP 510
R SP
Sbjct: 1167 QRLILSP 1173
Score = 30.4 bits (67), Expect = 5.5
Identities = 42/160 (26%), Positives = 54/160 (33%), Gaps = 19/160 (11%)
Query: 101 APQDRLPHPCSSGFSVRSQ-SLHSVGGTDDDSSCGS-----------RRQPPPKPKRDPS 148
AP LP P F R L GG ++ G+ RR PPK R P+
Sbjct: 2812 APSSSLPTPPQQPFIARRHIELGVTGGGSPENGDGALLAITPPAVKRRRGRPPKKNRSPA 2871
Query: 149 TKLSTSSETVSSTAASK-SGKTP---ERTEASAKPRPHSDEYSKKIP-PPKPKRNPNTQL 203
E SST K +G P T A P P P+P PN L
Sbjct: 2872 DAGRGVDEAPSSTLKGKTNGADPVPGPETLIVADPVLEPQLIPGPQPLGPQPVHRPNPLL 2931
Query: 204 STSFDETYIKKHGPRRTSLPRDSSLSQMGSPAGDPEEEEP 243
S E + P+ LP ++S G + + P
Sbjct: 2932 SPV--EKRRRGRPPKARDLPIPGTISSAGDGNSESRTQPP 2969
Score = 30.4 bits (67), Expect = 5.5
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 323 PPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEV-TKLPVLENVSYMKQPAGASPS 381
PPP P+ L+ PPLLV P A V + +T + + T P + K P PS
Sbjct: 2968 PPPHPSPLTPLPPLLVCPTATV-------ANTVTTVTISTSPPKRKRGRPPKNPPSPRPS 3020
Query: 382 TLP 384
LP
Sbjct: 3021 QLP 3023
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 53.1 bits (126), Expect = 8e-07
Identities = 96/395 (24%), Positives = 124/395 (31%), Gaps = 86/395 (21%)
Query: 103 QDRLPHPCSSGF--SVRSQSLHSVGGTDDDSSCGSRRQPPPKPKRDPSTKLSTSSETVSS 160
+ LP P S S+ +SL+ G +D R P S + +++ SS
Sbjct: 93 EQELPRPQSPSDLDSLDGRSLNDDGSSDPRDIDQDNRSTSPSIYSPGSVE----NDSDSS 148
Query: 161 TAASKSGKTPERTEASAKPRPHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKKHGPRRT 220
+ S+ P P P PP R P T H P
Sbjct: 149 SGLSQGPARPYHPPPLFPPSPQ--------PPDSTPRQPEASFEPHPSVTPTGYHAPME- 199
Query: 221 SLPRDSSLSQMGSPAGDPEEEEPVYIEMVGNILRDFRKEDDDQSEAVYEEMKYPIFDDLG 280
P S + Q +P G P +Y G +L P G
Sbjct: 200 --PPTSRMFQ--APPGAPPPHPQLYPGGTGGVLSG------------------PPMGPKG 237
Query: 281 QDAKCDFDHHSCSSQCATPTVPDLDFAKASVPCPPKGLLCDIPPPFP---NLLSHRPPLL 337
A + Q PT P + + PP PP P L PP
Sbjct: 238 GGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTK-----PPTTPVGGGNLPSAPPPA 292
Query: 338 VFPPAPVHCSPNSDESPLTPLEVTKLPVLENVSYMKQPAGASPSTLPSHVPGHAKL---- 393
FP H +PN P L L N S GA P LP H+P +
Sbjct: 293 NFP----HVTPNLPPPPA-------LRPLNNASASPPGLGAQP--LPGHLPSPHAMGQGM 339
Query: 394 -------EKEQAAALGPASATPALSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSL 446
EK A P S PA SS+P PP +P S S+S S + S
Sbjct: 340 GGLPPGPEKGPTLAPSPHSLPPASSSAPAPPMR---------FPYSSSSSSSAAASSSSS 390
Query: 447 TPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVS 481
+ S P P S++ PS PHS P P S
Sbjct: 391 SSSSSASPFP--------ASQALPSYPHSFPPPTS 417
Score = 39.7 bits (91), Expect = 0.009
Identities = 110/451 (24%), Positives = 152/451 (33%), Gaps = 96/451 (21%)
Query: 140 PPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPRPHSD---EYSKKIPPPKPK 196
P P R P + S+SS SS+++S S +SA P P S Y PPP
Sbjct: 367 PAPPMRFPYSSSSSSSAAASSSSSSSS--------SSASPFPASQALPSYPHSFPPP--- 415
Query: 197 RNPNTQLSTSFDETYIKKHGPRRT--SLPRDSSLSQMGSPAGDPEEEEPVYIEMVGNILR 254
T LS S P+ T SLP + SQ P P Y ++ N
Sbjct: 416 ----TSLSVS-------NQPPKYTQPSLPSQAVWSQGPPPP-------PPYGRLLANSNA 457
Query: 255 D---FRKEDDDQSEAV--------YEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPTVPD 303
F QS A + + + Q + HH S P P
Sbjct: 458 HPGPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNSG----PPPP- 512
Query: 304 LDFAKASVPCPPKGLLCDIPPPF---PNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEV 360
+ P P +G P+ P+L S RP +PP P H P + +
Sbjct: 513 -----GAFPHPLEGGSSHHAHPYAMSPSLGSLRP----YPPGPAHLPPPHSQVSYSQAGP 563
Query: 361 TKLPVLENVSYMKQPAGASPSTLPSHVP-GHAKLEKEQAAALGPASATPALSSSPPPPST 419
PV + + +S ST P H + A P P +++S ST
Sbjct: 564 NGPPVSSS-------SNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLST 616
Query: 420 L----------YRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSS 469
+ Y+T SP G P +PSP + PP Y S +
Sbjct: 617 VIATVASSPAGYKTASPPGPPPYGKRAPSPGA-------YKTATPPGYKPGSPPSFRTGT 669
Query: 470 PSVPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSGRSLLRKSS 529
P T P K + V G P S P+ P +SG L S
Sbjct: 670 PPGYRGTSPPAGPGTFKPGSPTVGP-GPLPPAGPSGLPSLPPPPAAP--ASGPPL----S 722
Query: 530 SGRRSKEPAEK-STEELKV-RSHSTEPLPKL 558
+ + +EPAE+ T E V + S P PK+
Sbjct: 723 ATQIKQEPAEEYETPESPVPPARSPSPPPKV 753
Score = 30.8 bits (68), Expect = 4.2
Identities = 39/137 (28%), Positives = 47/137 (34%), Gaps = 13/137 (9%)
Query: 107 PHPCSSGFSVRSQSLHSVGGTDDDSSCGSRRQPPPKPK----RDPSTKLSTSSETVSSTA 162
P SS S S S S + S G + P P P S LST TV+S+
Sbjct: 566 PPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSP 625
Query: 163 ASKSGKTPERTEASAKPRPHSDEYSKKIPPP-KPKRNPNTQLSTSFDETYIKKHGPRRTS 221
A +P K P Y PP KP P+ + T G R TS
Sbjct: 626 AGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGT--------PPGYRGTS 677
Query: 222 LPRDSSLSQMGSPAGDP 238
P + GSP P
Sbjct: 678 PPAGPGTFKPGSPTVGP 694
Score = 30.0 bits (66), Expect = 7.2
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 15/96 (15%)
Query: 100 PAPQDRLPHPCSSGFSVRSQSLHSVGGTDDDSSCGSRRQPPPKPKRDPSTKLSTSSETVS 159
PAP R P+ SS S + S SS S P P + PS S
Sbjct: 367 PAPPMRFPYSSSSSSSAAASS--------SSSSSSSSASPFPASQALPSYPHSFP----P 414
Query: 160 STAASKSGKTPERTEASAKPRPHSDEYSKKIPPPKP 195
T+ S S + P+ T+ S P +S+ PPP P
Sbjct: 415 PTSLSVSNQPPKYTQPSL---PSQAVWSQGPPPPPP 447
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 53.1 bits (126), Expect = 8e-07
Identities = 96/395 (24%), Positives = 124/395 (31%), Gaps = 86/395 (21%)
Query: 103 QDRLPHPCSSGF--SVRSQSLHSVGGTDDDSSCGSRRQPPPKPKRDPSTKLSTSSETVSS 160
+ LP P S S+ +SL+ G +D R P S + +++ SS
Sbjct: 93 EQELPRPQSPSDLDSLDGRSLNDDGSSDPRDIDQDNRSTSPSIYSPGSVE----NDSDSS 148
Query: 161 TAASKSGKTPERTEASAKPRPHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKKHGPRRT 220
+ S+ P P P PP R P T H P
Sbjct: 149 SGLSQGPARPYHPPPLFPPSPQ--------PPDSTPRQPEASFEPHPSVTPTGYHAPME- 199
Query: 221 SLPRDSSLSQMGSPAGDPEEEEPVYIEMVGNILRDFRKEDDDQSEAVYEEMKYPIFDDLG 280
P S + Q +P G P +Y G +L P G
Sbjct: 200 --PPTSRMFQ--APPGAPPPHPQLYPGGTGGVLSG------------------PPMGPKG 237
Query: 281 QDAKCDFDHHSCSSQCATPTVPDLDFAKASVPCPPKGLLCDIPPPFP---NLLSHRPPLL 337
A + Q PT P + + PP PP P L PP
Sbjct: 238 GGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTK-----PPTTPVGGGNLPSAPPPA 292
Query: 338 VFPPAPVHCSPNSDESPLTPLEVTKLPVLENVSYMKQPAGASPSTLPSHVPGHAKL---- 393
FP H +PN P L L N S GA P LP H+P +
Sbjct: 293 NFP----HVTPNLPPPPA-------LRPLNNASASPPGLGAQP--LPGHLPSPHAMGQGM 339
Query: 394 -------EKEQAAALGPASATPALSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSL 446
EK A P S PA SS+P PP +P S S+S S + S
Sbjct: 340 GGLPPGPEKGPTLAPSPHSLPPASSSAPAPPMR---------FPYSSSSSSSAAASSSSS 390
Query: 447 TPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVS 481
+ S P P S++ PS PHS P P S
Sbjct: 391 SSSSSASPFP--------ASQALPSYPHSFPPPTS 417
Score = 39.7 bits (91), Expect = 0.009
Identities = 110/451 (24%), Positives = 152/451 (33%), Gaps = 96/451 (21%)
Query: 140 PPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPRPHSD---EYSKKIPPPKPK 196
P P R P + S+SS SS+++S S +SA P P S Y PPP
Sbjct: 367 PAPPMRFPYSSSSSSSAAASSSSSSSS--------SSASPFPASQALPSYPHSFPPP--- 415
Query: 197 RNPNTQLSTSFDETYIKKHGPRRT--SLPRDSSLSQMGSPAGDPEEEEPVYIEMVGNILR 254
T LS S P+ T SLP + SQ P P Y ++ N
Sbjct: 416 ----TSLSVS-------NQPPKYTQPSLPSQAVWSQGPPPP-------PPYGRLLANSNA 457
Query: 255 D---FRKEDDDQSEAV--------YEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPTVPD 303
F QS A + + + Q + HH S P P
Sbjct: 458 HPGPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNSG----PPPP- 512
Query: 304 LDFAKASVPCPPKGLLCDIPPPF---PNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEV 360
+ P P +G P+ P+L S RP +PP P H P + +
Sbjct: 513 -----GAFPHPLEGGSSHHAHPYAMSPSLGSLRP----YPPGPAHLPPPHSQVSYSQAGP 563
Query: 361 TKLPVLENVSYMKQPAGASPSTLPSHVP-GHAKLEKEQAAALGPASATPALSSSPPPPST 419
PV + + +S ST P H + A P P +++S ST
Sbjct: 564 NGPPVSSS-------SNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLST 616
Query: 420 L----------YRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSS 469
+ Y+T SP G P +PSP + PP Y S +
Sbjct: 617 VIATVASSPAGYKTASPPGPPPYGKRAPSPGA-------YKTATPPGYKPGSPPSFRTGT 669
Query: 470 PSVPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSGRSLLRKSS 529
P T P K + V G P S P+ P +SG L S
Sbjct: 670 PPGYRGTSPPAGPGTFKPGSPTVGP-GPLPPAGPSGLPSLPPPPAAP--ASGPPL----S 722
Query: 530 SGRRSKEPAEK-STEELKV-RSHSTEPLPKL 558
+ + +EPAE+ T E V + S P PK+
Sbjct: 723 ATQIKQEPAEEYETPESPVPPARSPSPPPKV 753
Score = 30.8 bits (68), Expect = 4.2
Identities = 39/137 (28%), Positives = 47/137 (34%), Gaps = 13/137 (9%)
Query: 107 PHPCSSGFSVRSQSLHSVGGTDDDSSCGSRRQPPPKPK----RDPSTKLSTSSETVSSTA 162
P SS S S S S + S G + P P P S LST TV+S+
Sbjct: 566 PPVSSSSNSSSSTSQGSYPCSHPSPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSP 625
Query: 163 ASKSGKTPERTEASAKPRPHSDEYSKKIPPP-KPKRNPNTQLSTSFDETYIKKHGPRRTS 221
A +P K P Y PP KP P+ + T G R TS
Sbjct: 626 AGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPGSPPSFRTGT--------PPGYRGTS 677
Query: 222 LPRDSSLSQMGSPAGDP 238
P + GSP P
Sbjct: 678 PPAGPGTFKPGSPTVGP 694
Score = 30.0 bits (66), Expect = 7.2
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 15/96 (15%)
Query: 100 PAPQDRLPHPCSSGFSVRSQSLHSVGGTDDDSSCGSRRQPPPKPKRDPSTKLSTSSETVS 159
PAP R P+ SS S + S SS S P P + PS S
Sbjct: 367 PAPPMRFPYSSSSSSSAAASS--------SSSSSSSSASPFPASQALPSYPHSFP----P 414
Query: 160 STAASKSGKTPERTEASAKPRPHSDEYSKKIPPPKP 195
T+ S S + P+ T+ S P +S+ PPP P
Sbjct: 415 PTSLSVSNQPPKYTQPSL---PSQAVWSQGPPPPPP 447
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 52.8 bits (125), Expect = 1e-06
Identities = 53/184 (28%), Positives = 69/184 (37%), Gaps = 29/184 (15%)
Query: 311 VPCPPKGL-----LCDIPPPFPNLLSHRPPLLV-----FPPAPVHCSPNSDESPLTPLEV 360
VP PP L C PPP P LS P ++ FPP P P + PL P+
Sbjct: 833 VPVPPPTLPKQQSFCAKPPPSP--LSPVPSVVKQIASQFPPPPT--PPAMESQPLKPVPA 888
Query: 361 TKLPVLENVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTL 420
P ++ +K PS++P P E + P +P + PPPP T
Sbjct: 889 NVAP--QSPPAVKAKPKWQPSSIPVPSPDFPPPPPESSLVFPPPPPSPVPAPPPPPPPTA 946
Query: 421 YRTQSPHGYP-KSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRP 479
T G P K S + SP K+PPP S +SS H P+
Sbjct: 947 SPTPDKSGSPGKKTSKTSSPGG----------KKPPP--TPQRNSSIKSSSGAEHPEPKR 994
Query: 480 VSQD 483
S D
Sbjct: 995 PSVD 998
Score = 50.4 bits (119), Expect = 5e-06
Identities = 94/417 (22%), Positives = 135/417 (32%), Gaps = 67/417 (16%)
Query: 298 TPTVPDLDFAKASVPCPPKGLLCDIPPP---------------------FPNLLSHRPPL 336
TP V K + PP G++ PPP P + PPL
Sbjct: 688 TPPVMQSQSVKPQILVPPNGVVPPPPPPPPPPTPGSAMAQLKPAPCAPSLPQFSAPPPPL 747
Query: 337 LVF-------------PPAPVHCSPNSDESPLTPLEVTKLPVLENVSYMKQPAGASPSTL 383
+ PP P +P ++P PL P A P+
Sbjct: 748 KIHQVQHITQVAPPTPPPPPPIPAPLPPQAPPKPLVTIPAPTSTKTVAPVVTQAAPPTPT 807
Query: 384 PSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMG 443
P VP K A+ + P+ TP + P PP TL + QS P SP P +
Sbjct: 808 PP-VPPAKKQPAFPASYIPPSPPTPPV---PVPPPTLPKQQSFCAKPPPSPLSPVPSVVK 863
Query: 444 RSLTPLSLKRPP------PYDAVHSGSLSRSSPSV-------PHSTPRPVSQDGAKMVNA 490
+ + P P V + +S P+V P S P P S D
Sbjct: 864 QIASQFPPPPTPPAMESQPLKPVPANVAPQSPPAVKAKPKWQPSSIPVP-SPDFPPPPPE 922
Query: 491 AVNTYGAAPGGSRSRTPTSPLEELT----SLFSSGRSLLRKSSSGRRSKEPAEKSTEELK 546
+ + P P P + S G+ + SS G + P + +K
Sbjct: 923 SSLVFPPPPPSPVPAPPPPPPPTASPTPDKSGSPGKKTSKTSSPGGKKPPPTPQRNSSIK 982
Query: 547 VRSHSTEPLPK---LDNKERGHHGASSSREPVKAQEWDGTPGPPVVTSRLGRCSVSPTLL 603
S + P PK +D+ + S P K T PP + G+ ++S L
Sbjct: 983 SSSGAEHPEPKRPSVDSLVSKFTPPAESGSPSKE-----TLPPPAAPPKPGKLNLSGVNL 1037
Query: 604 AGNHSSDLVLERN---SGGGLDHESAWGSQDSQDVFQGALQDTQLPTKDIERTTMMS 657
G V + SG G D + S S F +T+LP IE + S
Sbjct: 1038 PGVLQQGCVSAKAPVLSGRGKDSVVEFPSPPSDSDFPPPPPETELPLPPIEIPAVFS 1094
Score = 49.7 bits (117), Expect = 9e-06
Identities = 80/347 (23%), Positives = 125/347 (36%), Gaps = 74/347 (21%)
Query: 139 PPPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPRPHSDEYSKKIPPPKPKRN 198
PPP P P+ +S KSG ++T ++ P K PPP P+RN
Sbjct: 928 PPPPPSPVPAPP--PPPPPTASPTPDKSGSPGKKTSKTSSP-------GGKKPPPTPQRN 978
Query: 199 PNTQLSTSFDETYIKKHGPRRTSLPRDSSLSQMGSPA--GDPEEE---------EPVYIE 247
+ + S+ + P+R S+ DS +S+ PA G P +E +P +
Sbjct: 979 SSIKSSSGAEHP-----EPKRPSV--DSLVSKFTPPAESGSPSKETLPPPAAPPKPGKLN 1031
Query: 248 MVGNILRDFRKEDDDQSEAVYEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPTVPDLDFA 307
+ G L ++ ++A P+ G+D+ +F S P
Sbjct: 1032 LSGVNLPGVLQQGCVSAKA-------PVLSGRGKDSVVEFPSPPSDSDFPPPP------P 1078
Query: 308 KASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNS-------------DESP 354
+ +P PP +IP F S P + V P P S S D +
Sbjct: 1079 ETELPLPP----IEIPAVFSGNTS--PKVAVVNPQPQQWSKMSVKKAPPPTRPKRNDSTR 1132
Query: 355 LTPLEVTKLPVLENV----------SYMKQP---AGASPSTLPSHVPGHAKLEKEQAAAL 401
LT E+++ P + V S QP A + + + H L + A
Sbjct: 1133 LTQAEISEQPTMATVVPQVPTSPKSSLSVQPGFLADLNRTLQRKSITRHGSLSSRMSRA- 1191
Query: 402 GPASATPALSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTP 448
+AT + PPPP L Q GY SH + + + G P
Sbjct: 1192 -EPTATMDDMALPPPPPELLSDQQKAGYGGSHISGYATLRRGPPPAP 1237
Score = 37.4 bits (85), Expect = 0.045
Identities = 51/208 (24%), Positives = 74/208 (35%), Gaps = 31/208 (14%)
Query: 309 ASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLEN 368
AS P PP PPP P PP PP P +P++ + ++ + + L+N
Sbjct: 621 ASQPSPPLP-----PPPPPPPPPPPPPPPPPPPLPSQSAPSAGSAAPMFVKYSTITRLQN 675
Query: 369 VSYMKQPAGA--SPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQSP 426
S Q +GA P T P Q+ ++ P P PPPP P
Sbjct: 676 AS---QHSGALFKPPTPP----------VMQSQSVKPQILVPPNGVVPPPP-----PPPP 717
Query: 427 HGYPKSHSTSPSPVSMGRSLTPLSLKRPP--PYDAVHSGSLSRSSPSVPHSTPRPVSQDG 484
P S P SL S PP + H ++ +P P P P+
Sbjct: 718 PPTPGSAMAQLKPAPCAPSLPQFSAPPPPLKIHQVQHITQVAPPTPPPPPPIPAPLPPQA 777
Query: 485 AK----MVNAAVNTYGAAPGGSRSRTPT 508
+ A +T AP +++ PT
Sbjct: 778 PPKPLVTIPAPTSTKTVAPVVTQAAPPT 805
>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
Length = 987
Score = 52.8 bits (125), Expect = 1e-06
Identities = 117/520 (22%), Positives = 170/520 (32%), Gaps = 72/520 (13%)
Query: 47 DRLRNETNLAYLKEKNEKRRRQEEAIKRIGGEVG--RGHEGSYVGKHFRMGFMTMPAPQD 104
D ET L+ LKEK +KR +EE + G+ R H+ S G + P
Sbjct: 40 DPCAKETVLSALKEKKKKRTVEEEDQIFLDGQENKRRRHDSSGSGHSAFEPLVASGVPAS 99
Query: 105 RLPHPCSSGFSVRSQS----LHSVGGTDDDSS-CGSRRQPPPKPKRDPSTKLSTSSETVS 159
+P P S + SQS L+ + SS G+ P R+ T +S+ +S
Sbjct: 100 FVPKPGSLKRGLNSQSSDDHLNKRSRSSSMSSLTGAYTSGIPSSSRNAITSSYSSTRGIS 159
Query: 160 -------------STAASKSGKTPERTEASAKPRPHSDEYSKKIPPPKPKRNPNTQLSTS 206
S+ AS +TPER + S P K +Q +
Sbjct: 160 QLWKRNGPSSSPFSSPASSRSQTPERPAKKIREEELCHHSSSSTPLAADK---ESQGEKA 216
Query: 207 FDETYIKKHGPRRTSLPRDSSLSQMGSPAGDPEEEEPVYIEMVGNILRDFRKEDDDQSEA 266
D T KK S P S + E + + + ED D +
Sbjct: 217 ADTTPRKKQNSNSQSTPGSSGQRKRKVQLLPSRRGEQLTLPPPPQLGYSITAEDLDLEKK 276
Query: 267 VYEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPTVPDLDFA--KASVPCPPKGLLCDIPP 324
+ +D K D +S + T T P F A+ PP LL
Sbjct: 277 ASLQWFNQALED-----KSDAASNSVTETPPT-TQPSFTFTLPAAATASPPTSLLAPSTN 330
Query: 325 PFPNLLS--HRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLENVSYMKQPAGASPST 382
P L PP L PP P + E+ P + LP P G S S
Sbjct: 331 PLLESLKKMQTPPSL--PPCPESAGAATTEALSPPKTPSLLP----------PLGLSQS- 377
Query: 383 LPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTLY-RTQSPHGYPKSHSTSPSPVS 441
GP P+ S PP+TL +P P + + +P +
Sbjct: 378 -------------------GPPGLLPSPSFDSKPPTTLLGLIPAPSMVPATDTKAPPTLQ 418
Query: 442 MGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAPGG 501
+ P + P P A L + + P S P + + M AP
Sbjct: 419 AETATKPQATSAPSP--APKQSFLFGTQNTSPSSPAAPAASSASPMFKPIF----TAPPK 472
Query: 502 SRSRTPTSPLEELTSLFSSGRSLLRKSSSGRRSKEPAEKS 541
S PT P +T+ S SL +S+ + +P S
Sbjct: 473 SEKEGPTPPGPSVTATAPSSSSLPTTTSTTAPTFQPVFSS 512
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 52.0 bits (123), Expect = 2e-06
Identities = 73/279 (26%), Positives = 100/279 (35%), Gaps = 53/279 (18%)
Query: 314 PPKGLLCDIPPPFPNLLSHR---PPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLENVS 370
PP+ +PPP P++ S PP + P P+ SP++ SP P
Sbjct: 161 PPEPQRNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVP------------- 207
Query: 371 YMKQPAGASPSTLPSHVPGHAKLEKEQAAALG-------PASATPALSSSPPPPSTLYRT 423
P SP P PG+ + ALG P S++ S+ PP P T R
Sbjct: 208 --GGPRQPSPGPTPPPFPGN------RGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRA 259
Query: 424 QSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQD 483
P P PV S+ ++ PPP + P VP STPRP +
Sbjct: 260 LDDKPPP-----PPPPVGNRPSIHREAVPPPPP---------QNNKPPVP-STPRPSASS 304
Query: 484 GAKMVNAAVNTYGAAP----GGSRSRTPTSPLEELTSLFSSGRSLLRKSSSGRRSKEPAE 539
A + G P TP P L SL SS L SG P+E
Sbjct: 305 QAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNL-SLSSSTPPLPSPGRSGPLPPPPSE 363
Query: 540 KSTEELKVRSHSTEPLPKLDNKERGHHGASSSREPVKAQ 578
+ ++ + PLP R +G++S P Q
Sbjct: 364 RPPPPVRDPPGRSGPLPPPPPVSR--NGSTSRALPATPQ 400
Score = 43.9 bits (102), Expect = 5e-04
Identities = 52/179 (29%), Positives = 69/179 (38%), Gaps = 37/179 (20%)
Query: 311 VPCPPKGLLCDIPPPFPNLLSHRPPL---LVFPPAPVHCSPNSDESPLTPLEVTKLPVLE 367
+P P L D PPP P + +RP + V PP P + P +P P ++ P
Sbjct: 252 LPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTP-RPSASSQAP--- 307
Query: 368 NVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSS------PPPPSTLY 421
P+ P LP G+ + + L +S+TP L S PPPPS
Sbjct: 308 --PPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPS--- 362
Query: 422 RTQSPHGYPKSHSTSPSPV--SMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPR 478
P PV GRS PL PPP +GS SR+ P+ P R
Sbjct: 363 ------------ERPPPPVRDPPGRS-GPL----PPPPPVSRNGSTSRALPATPQLPSR 404
Score = 37.0 bits (84), Expect = 0.059
Identities = 60/224 (26%), Positives = 80/224 (35%), Gaps = 28/224 (12%)
Query: 412 SSPP--PPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKR--PPPYDAVHSGSLSR 467
S PP PP + P P P P RS P + PPP V GS
Sbjct: 124 SRPPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDV--GSKPD 181
Query: 468 SSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSR--SRTPTSPLEELTSLFSSGRSLL 525
S P STPRP+ + V PGG R S PT P + G +
Sbjct: 182 SIPPPVPSTPRPIQSSPHNRGSPPV------PGGPRQPSPGPTPPPFPGNRGTALGGGSI 235
Query: 526 RK---SSSGRRSKEPAEKSTEELKVRSHSTEPLPKLDNKERGHHGA------SSSREPV- 575
R+ SSS S P T + P P + N+ H A +++ PV
Sbjct: 236 RQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVP 295
Query: 576 ---KAQEWDGTPGPPVVTSRLGRCSVSPTLLAGNHSSDLVLERN 616
+ P PP SR G + P+ +GN + + +RN
Sbjct: 296 STPRPSASSQAPPPPPPPSRPGPPPLPPS-SSGNDETPRLPQRN 338
Score = 36.6 bits (83), Expect = 0.077
Identities = 58/217 (26%), Positives = 71/217 (32%), Gaps = 39/217 (17%)
Query: 323 PPPFP--------------NLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLEN 368
PPPFP + LS P PP P S D+ P P
Sbjct: 219 PPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPP----------- 267
Query: 369 VSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSS-SPPPPSTLYRTQSPH 427
P G PS VP + P++ P+ SS +PPPP R P
Sbjct: 268 ----PPPVGNRPSIHREAVPPPPPQNNKPPV---PSTPRPSASSQAPPPPPPPSRPGPPP 320
Query: 428 GYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQDGAKM 487
P S +P R+L+ LS PP SG L P P P P +D
Sbjct: 321 LPPSSSGNDETPRLPQRNLS-LSSSTPPLPSPGRSGPL----PPPPSERPPPPVRDPPGR 375
Query: 488 VNAAVNTYGAAPGGSRSRT-PTSPLEELTSLFSSGRS 523
+ GS SR P +P S S RS
Sbjct: 376 SGPLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRS 412
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 52.0 bits (123), Expect = 2e-06
Identities = 73/279 (26%), Positives = 100/279 (35%), Gaps = 53/279 (18%)
Query: 314 PPKGLLCDIPPPFPNLLSHR---PPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLENVS 370
PP+ +PPP P++ S PP + P P+ SP++ SP P
Sbjct: 161 PPEPQRNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVP------------- 207
Query: 371 YMKQPAGASPSTLPSHVPGHAKLEKEQAAALG-------PASATPALSSSPPPPSTLYRT 423
P SP P PG+ + ALG P S++ S+ PP P T R
Sbjct: 208 --GGPRQPSPGPTPPPFPGN------RGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRA 259
Query: 424 QSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQD 483
P P PV S+ ++ PPP + P VP STPRP +
Sbjct: 260 LDDKPPP-----PPPPVGNRPSIHREAVPPPPP---------QNNKPPVP-STPRPSASS 304
Query: 484 GAKMVNAAVNTYGAAP----GGSRSRTPTSPLEELTSLFSSGRSLLRKSSSGRRSKEPAE 539
A + G P TP P L SL SS L SG P+E
Sbjct: 305 QAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNL-SLSSSTPPLPSPGRSGPLPPPPSE 363
Query: 540 KSTEELKVRSHSTEPLPKLDNKERGHHGASSSREPVKAQ 578
+ ++ + PLP R +G++S P Q
Sbjct: 364 RPPPPVRDPPGRSGPLPPPPPVSR--NGSTSRALPATPQ 400
Score = 43.9 bits (102), Expect = 5e-04
Identities = 52/179 (29%), Positives = 69/179 (38%), Gaps = 37/179 (20%)
Query: 311 VPCPPKGLLCDIPPPFPNLLSHRPPL---LVFPPAPVHCSPNSDESPLTPLEVTKLPVLE 367
+P P L D PPP P + +RP + V PP P + P +P P ++ P
Sbjct: 252 LPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTP-RPSASSQAP--- 307
Query: 368 NVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSS------PPPPSTLY 421
P+ P LP G+ + + L +S+TP L S PPPPS
Sbjct: 308 --PPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPS--- 362
Query: 422 RTQSPHGYPKSHSTSPSPV--SMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPR 478
P PV GRS PL PPP +GS SR+ P+ P R
Sbjct: 363 ------------ERPPPPVRDPPGRS-GPL----PPPPPVSRNGSTSRALPATPQLPSR 404
Score = 37.0 bits (84), Expect = 0.059
Identities = 60/224 (26%), Positives = 80/224 (35%), Gaps = 28/224 (12%)
Query: 412 SSPP--PPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKR--PPPYDAVHSGSLSR 467
S PP PP + P P P P RS P + PPP V GS
Sbjct: 124 SRPPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDV--GSKPD 181
Query: 468 SSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSR--SRTPTSPLEELTSLFSSGRSLL 525
S P STPRP+ + V PGG R S PT P + G +
Sbjct: 182 SIPPPVPSTPRPIQSSPHNRGSPPV------PGGPRQPSPGPTPPPFPGNRGTALGGGSI 235
Query: 526 RK---SSSGRRSKEPAEKSTEELKVRSHSTEPLPKLDNKERGHHGA------SSSREPV- 575
R+ SSS S P T + P P + N+ H A +++ PV
Sbjct: 236 RQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVP 295
Query: 576 ---KAQEWDGTPGPPVVTSRLGRCSVSPTLLAGNHSSDLVLERN 616
+ P PP SR G + P+ +GN + + +RN
Sbjct: 296 STPRPSASSQAPPPPPPPSRPGPPPLPPS-SSGNDETPRLPQRN 338
Score = 36.6 bits (83), Expect = 0.077
Identities = 58/217 (26%), Positives = 71/217 (32%), Gaps = 39/217 (17%)
Query: 323 PPPFP--------------NLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLEN 368
PPPFP + LS P PP P S D+ P P
Sbjct: 219 PPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPP----------- 267
Query: 369 VSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSS-SPPPPSTLYRTQSPH 427
P G PS VP + P++ P+ SS +PPPP R P
Sbjct: 268 ----PPPVGNRPSIHREAVPPPPPQNNKPPV---PSTPRPSASSQAPPPPPPPSRPGPPP 320
Query: 428 GYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQDGAKM 487
P S +P R+L+ LS PP SG L P P P P +D
Sbjct: 321 LPPSSSGNDETPRLPQRNLS-LSSSTPPLPSPGRSGPL----PPPPSERPPPPVRDPPGR 375
Query: 488 VNAAVNTYGAAPGGSRSRT-PTSPLEELTSLFSSGRS 523
+ GS SR P +P S S RS
Sbjct: 376 SGPLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRS 412
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 51.6 bits (122), Expect = 2e-06
Identities = 59/229 (25%), Positives = 85/229 (37%), Gaps = 24/229 (10%)
Query: 323 PPPF---PNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLENVSYMKQPAGAS 379
PPP P L+H PPL P P + + P++P V PV K +
Sbjct: 1195 PPPAEPPPTDLAHLPPL----PPPEGEARKPAKPPVSPKPVLTQPV------PKLQGSPT 1244
Query: 380 PSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQSPHGYPKSHSTSPSP 439
P++ +PG E ++A P P PPPP+ ++ G P S S PSP
Sbjct: 1245 PTSKKVPLPGPGSPEVKRAHGTPP----PVSPKPPPPPTAPKPVKAVAGLP-SGSAGPSP 1299
Query: 440 VSMGRSLTPLSLKRPPPYDAVHSGSLSRS-SPS-----VPHSTPRPVSQDGAKMVNAAVN 493
P +L +PP S ++ SP VP PR + A
Sbjct: 1300 APSPARQPPAALAKPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAAAAAAAAAAPPAP 1359
Query: 494 TYGAAPGGSRSRTPTSPLEELTSLFSSGRSLLRKSSSGRRSKEPAEKST 542
GA+PG S + L + + +R+ + AEKST
Sbjct: 1360 PEGASPGDSARQKLEETSACLAAALQAVEEKIRQEDAQGPRDSAAEKST 1408
Score = 33.5 bits (75), Expect = 0.65
Identities = 38/127 (29%), Positives = 42/127 (33%), Gaps = 14/127 (11%)
Query: 385 SHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGR 444
S G +L A P + L PPP + P PK T P P G
Sbjct: 1183 SEQAGPPELPPPPPPAEPPPTDLAHLPPLPPPEGEARKPAKPPVSPKPVLTQPVPKLQG- 1241
Query: 445 SLTPLSLKRPPPYDAVHSGSLSRSSPSV--PHSTPRPVSQDGAKMVNA--AVNTYGAAPG 500
S TP S K P P SP V H TP PVS A V P
Sbjct: 1242 SPTPTSKKVPLP---------GPGSPEVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPS 1292
Query: 501 GSRSRTP 507
GS +P
Sbjct: 1293 GSAGPSP 1299
>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
sapiens]
Length = 1130
Score = 51.2 bits (121), Expect = 3e-06
Identities = 75/310 (24%), Positives = 115/310 (37%), Gaps = 35/310 (11%)
Query: 139 PPPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASAKPRPHSDEYSKKIPPPKPKRN 198
PPP P T T S +K + PE A+ P P PPP P
Sbjct: 800 PPPPSGATPPPIAPTGPPTASPPVPAK--EEPEELPAAPGPLPPPP------PPPPPVPG 851
Query: 199 PNTQLSTSF-DETYIKKHGPRRTSLPRDSSLSQMGSP--AGDPEEEEPVYIEMVGNILRD 255
P T E GP +L D ++ + S + EEEE E D
Sbjct: 852 PVTLPPPQLVPEGTPGGGGP--PALEEDLTVININSSDEEEEEEEEEEEEEEEEEEEEED 909
Query: 256 FRKEDDDQSEAVYEEMKYPI-----FDDLGQDAKCDFDHHSCSSQCATPTVPDLDFAKAS 310
F +E++D+ E EE + F++ + + + + + V DL+F A
Sbjct: 910 FEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEEDEEEEEELEEVEDLEFGTAG 969
Query: 311 VPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLENVS 370
G + + PP P L PP L P +P P + P LEV + E
Sbjct: 970 ------GEVEEGAPPPPTL----PPALPPPESPPKVQPEPEPEPGLLLEVEEPGTEE--- 1016
Query: 371 YMKQPAGASPSTLPSHVPGHAKLEKE-QAAALGPASATPALSSSPPPPSTLYRTQSPHGY 429
++ A +P+ P +P ++E+E ++ A GP + P P TL ++ G
Sbjct: 1017 --ERGADTAPTLAPEALPSQGEVEREGESPAAGPPPQE-LVEEEPSAPPTLLEEETEDGS 1073
Query: 430 PKSHSTSPSP 439
K +P
Sbjct: 1074 DKVQPPPETP 1083
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 50.8 bits (120), Expect = 4e-06
Identities = 76/258 (29%), Positives = 93/258 (36%), Gaps = 48/258 (18%)
Query: 322 IPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLENVSYMKQPAGASPS 381
+PPPF PPL PP + P S P+ P LP V P P
Sbjct: 516 MPPPFVPYSQMPPPLPTMPPPVL---PPSLPPPVMP---PALPA--TVPPPGMPPPVMPP 567
Query: 382 TLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVS 441
+LP+ VP +A P P+LSS+ PPP P P ST+P PV
Sbjct: 568 SLPTSVPPPGMPPSLSSAGPPPVLPPPSLSSAGPPP-----VLPP---PSLSSTAPPPV- 618
Query: 442 MGRSLTPLSLKRPPP----------------YDAVHSGSLSRSS--PSVPHST--PRPVS 481
L PLS PPP V S S+SS P P P PVS
Sbjct: 619 --MPLPPLSSATPPPGIPPPGVPQGIPPQLTAAPVPPASSSQSSQVPEKPRPALLPTPVS 676
Query: 482 QDGAKMVNAAVNTYGAAPGGS-RSRTPTSPLEELTSLFSSGRSLLRKSSSGRRSKEPAEK 540
A A P S+ P S S FSS + L G S P++
Sbjct: 677 FGSAPPTTYHPPLQSAGPSEQVNSKAPLSKSALPYSSFSSDQGL------GESSAAPSQP 730
Query: 541 ST--EELKVRSHSTEPLP 556
T +++ VRS P P
Sbjct: 731 ITAVKDMPVRSGGLLPDP 748
Score = 35.8 bits (81), Expect = 0.13
Identities = 55/244 (22%), Positives = 79/244 (32%), Gaps = 24/244 (9%)
Query: 331 SHRPPLLVFPPAPV---HCSP----NSDESPLTP----------LEVTKLPVLENVSYMK 373
SH PP V PP PV SP +S +P P + +L L+ + +
Sbjct: 12 SHYPPPPVPPPPPVALPEASPGPGYSSSTTPAAPSSSGFMSFREQHLAQLQQLQQMHQKQ 71
Query: 374 QPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQSPHGYPKSH 433
P LP P G P PP P+ Y+ Q + + H
Sbjct: 72 MQCVLQPHHLPP--PPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQQQYKHQMLH 129
Query: 434 STSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPS-VPHSTPRPVSQDGAKMVNAAV 492
P L P+ L+ PP V GS S S +P P P
Sbjct: 130 HQRDGP----PGLVPMELESPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPTSSQPYLP 185
Query: 493 NTYGAAPGGSRSRTPTSPLEELTSLFSSGRSLLRKSSSGRRSKEPAEKSTEELKVRSHST 552
+ S++ +P +S SS +S L S S S + + + +S
Sbjct: 186 PAQPSPSQSPPSQSYLAPTPSYSSSSSSSQSYLSHSQSYLPSSQASPSRPSQGHSKSQLL 245
Query: 553 EPLP 556
P P
Sbjct: 246 APPP 249
Score = 35.8 bits (81), Expect = 0.13
Identities = 59/213 (27%), Positives = 77/213 (36%), Gaps = 33/213 (15%)
Query: 299 PTVPDLDFAKASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSDESP-LTP 357
P +P + P PP +PPP LS++ H D P L P
Sbjct: 90 PVMPGGGYGDWQPPPPP------MPPPPGPALSYQKQQQYKHQMLHH---QRDGPPGLVP 140
Query: 358 LEVTKLPVLENV---SYM--KQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSS 412
+E+ P V SYM Q P PS+ P + A P+ + P+ S
Sbjct: 141 MELESPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPTSSQPYLPPAQPSPSQSPPSQSY 200
Query: 413 SPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGS--LSRSSP 470
P PS Y S S+S S +S +S P S P HS S L+ P
Sbjct: 201 LAPTPS----------YSSSSSSSQSYLSHSQSYLPSSQASPSRPSQGHSKSQLLAPPPP 250
Query: 471 SVPHSTPRPVSQD----GAKMVNAAVNTYGAAP 499
S P V Q+ GAK N + AAP
Sbjct: 251 SAPPGNKTTVQQEPLESGAK--NKSTEQQQAAP 281
Score = 35.4 bits (80), Expect = 0.17
Identities = 47/221 (21%), Positives = 73/221 (33%), Gaps = 47/221 (21%)
Query: 312 PCPPKGLLCDIPPPFPNLLSHRPPLLVFPPAPVHCSPNSD------ESPLTPLEVTKLPV 365
P PP +PPP P L P + + +P+S E L L+ +
Sbjct: 15 PPPP------VPPPPPVALPEASPGPGYSSSTTPAAPSSSGFMSFREQHLAQLQQLQQMH 68
Query: 366 LENVSYMKQPAGASPSTLPSH--VPGHAKLEKEQAAALGPASATPALSSSPPPPSTLYRT 423
+ + + QP P LP +PG G P PP P+ Y+
Sbjct: 69 QKQMQCVLQPHHLPPPPLPPPPVMPG---------GGYGDWQPPPPPMPPPPGPALSYQK 119
Query: 424 QSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSL------------------ 465
Q + + H P L P+ L+ PP V GS
Sbjct: 120 QQQYKHQMLHHQRDGPPG----LVPMELESPPESPPVPPGSYMPPSQSYMPPPQPPPSYY 175
Query: 466 --SRSSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSRS 504
+ S P +P + P P ++ A +Y ++ S+S
Sbjct: 176 PPTSSQPYLPPAQPSPSQSPPSQSYLAPTPSYSSSSSSSQS 216
>gi|26051278 nuclear pore membrane protein 121 [Homo sapiens]
Length = 984
Score = 50.4 bits (119), Expect = 5e-06
Identities = 129/564 (22%), Positives = 186/564 (32%), Gaps = 81/564 (14%)
Query: 47 DRLRNETNLAYLKEKNEKRRRQEEAIKRIGGEVG--RGHEGSYVGKHFRMGFMTMPAPQD 104
D ET L+ LKEK +KR +EE + G+ R H+ S G + P
Sbjct: 40 DPCAKETVLSALKEKEKKRTVEEEDQIFLDGQENKRRRHDSSGSGHSAFEPLVANGVPAS 99
Query: 105 RLPHPCSSGFSVRSQS----LHSVGGTDDDSS-CGSRRQPPPKPKRDPSTKLSTSSETVS 159
+P P S + SQS L+ + SS G+ P R+ T +S+ +S
Sbjct: 100 FVPKPGSLKRGLNSQSSDDHLNKRSRSSSMSSLTGAYASGIPSSSRNAITSSYSSTRGIS 159
Query: 160 -------------STAASKSGKTPERTEASAKPRPHSDEYSKKIPPPKPKRNPNTQLSTS 206
S+ AS +TPER + S P + +Q +
Sbjct: 160 QLWKRNGPSSSPFSSPASSRSQTPERPAKKIREEELCHHSSSSTPLAADR---ESQGEKA 216
Query: 207 FDETYIKKHGPRRTSLPRDSSLSQMGSPAGDPEEEEPVYIEMVGNILRDFRKEDDDQSEA 266
D T KK S P S + E + + + ED D +
Sbjct: 217 ADTTPRKKQNSNSQSTPGSSGQRKRKVQLLPSRRGEQLTLPPPPQLGYSITAEDLDLEKK 276
Query: 267 VYEEMKYPIFDDLGQDAKCDFDHHSCSSQCATPTVPDLDFA----KASVPCPPKGLLCDI 322
+ +D A +S TP + F A+ PP LL
Sbjct: 277 ASLQWFNQALEDKSDAAS--------NSVTETPPITQPSFTFTLPAAAPASPPTSLLAPS 328
Query: 323 PPPFPNLLS--HRPPLLVFPPAPVHCSPNSDESPLTPLEVTKLPVLENVSYMKQPAGASP 380
P L PP L PP P + E+ P + LP P G S
Sbjct: 329 TNPLLESLKKMQTPPSL--PPCPESAGAATTEALSPPKTPSLLP----------PLGLSQ 376
Query: 381 STLPSHVPGHAKLEKEQAAALG--PA-SATPALSSSPPP------PSTLYRTQSPHGYPK 431
S P +P + K LG PA S PA + PP + T +P PK
Sbjct: 377 SGPPGLLPSPSFDSKPPTTLLGLIPAPSMVPATDTKAPPTLQAETATKPQATSAPSPAPK 436
Query: 432 ------SHSTSP-SPVSMGRSLTPLSLK-------------RPPPYDAVHSGSLSRSSPS 471
+ +TSP SP + S P K PP +V + + S SS
Sbjct: 437 QSFLFGTQNTSPSSPAAPAASSAPPMFKPIFTAPPKSEKEGPTPPGPSVTATAPSSSSLP 496
Query: 472 VPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLF---SSGRSLLRKS 528
ST P Q + + AP ++ TP + LF +S S +
Sbjct: 497 TTTSTTAPTFQPVFSSMGPPASVPLPAPFFKQTTTPATAPTTTAPLFTGLASATSAVAPI 556
Query: 529 SSGRRSKEPAEKSTEELKVRSHST 552
+S S + A K + S S+
Sbjct: 557 TSASPSTDSASKPAFGFGINSVSS 580
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 49.3 bits (116), Expect = 1e-05
Identities = 55/199 (27%), Positives = 70/199 (35%), Gaps = 39/199 (19%)
Query: 310 SVPCPPKGLLCDIPPPFPNLLSHRPPLLVFPPA-------PVHCSPNSDESPLTPLEVTK 362
S P PP IPPP P+ +PP PP P H P+ + P P + +
Sbjct: 54 SGPKPP------IPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSS 107
Query: 363 LPVLENVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALSSSPPPPSTLYR 422
PV+ G++P S P + P + P + +PPP T
Sbjct: 108 KPVVAQGPGPAPGVGSAPPASSSAPPA------TPPTSGAPPGSGPGPTPTPPPAVT--- 158
Query: 423 TQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQ 482
+P G P P+P S G TP PPP A G P P P P
Sbjct: 159 -SAPPGAPP-----PTPPSSGVPTTPPQAGGPPPPPAAVPG----PGPG-PKQGPGPGGP 207
Query: 483 DGAKMVNAAVNTYGAAPGG 501
G KM G PGG
Sbjct: 208 KGGKMPG------GPKPGG 220
Score = 37.0 bits (84), Expect = 0.059
Identities = 33/127 (25%), Positives = 40/127 (31%), Gaps = 12/127 (9%)
Query: 388 PGHAKLEKEQAAALGPASATPALSSSPPPPSTLYRT----QSPHGYPKSHSTSPSPVSMG 443
PG + GP + P PPPP + Q P P H P P
Sbjct: 36 PGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQ 95
Query: 444 RSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSR 503
+ P PPP D+ P+ + P S A T GA PG
Sbjct: 96 QQQPP-----PPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPP---ATPPTSGAPPGSGP 147
Query: 504 SRTPTSP 510
TPT P
Sbjct: 148 GPTPTPP 154
>gi|189011568 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 48.5 bits (114), Expect = 2e-05
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 25/203 (12%)
Query: 372 MKQPAGASPSTLPS-----HVPG--HAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQ 424
MKQP A+ ++ H+PG ++ + GP TPA S SP T T
Sbjct: 2213 MKQPLQANMPSISRGRTMIHIPGVRNSSSSTSPVSKKGPPLKTPA-SKSPSEGQTA--TT 2269
Query: 425 SPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTP--RPVSQ 482
SP G S + SPV+ S S K P SGS S+PS P P RP+
Sbjct: 2270 SPRGAKPSVKSELSPVARQTSQIGGSSKAPS-----RSGSRD-STPSRPAQQPLSRPIQS 2323
Query: 483 DGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSGRSLLRKSSSGRR-SKEPAEKS 541
G ++ N G +P S+ P + S SSG + +S GR+ S++ K
Sbjct: 2324 PGRNSISPGRN--GISPPNKLSQLPRTSSPSTASTKSSGSGKMSYTSPGRQMSQQNLTKQ 2381
Query: 542 TEELKVRSHSTEPLPKLDNKERG 564
T S + +P+ ++ +G
Sbjct: 2382 TG----LSKNASSIPRSESASKG 2400
>gi|189011566 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 48.5 bits (114), Expect = 2e-05
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 25/203 (12%)
Query: 372 MKQPAGASPSTLPS-----HVPG--HAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQ 424
MKQP A+ ++ H+PG ++ + GP TPA S SP T T
Sbjct: 2213 MKQPLQANMPSISRGRTMIHIPGVRNSSSSTSPVSKKGPPLKTPA-SKSPSEGQTA--TT 2269
Query: 425 SPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTP--RPVSQ 482
SP G S + SPV+ S S K P SGS S+PS P P RP+
Sbjct: 2270 SPRGAKPSVKSELSPVARQTSQIGGSSKAPS-----RSGSRD-STPSRPAQQPLSRPIQS 2323
Query: 483 DGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSGRSLLRKSSSGRR-SKEPAEKS 541
G ++ N G +P S+ P + S SSG + +S GR+ S++ K
Sbjct: 2324 PGRNSISPGRN--GISPPNKLSQLPRTSSPSTASTKSSGSGKMSYTSPGRQMSQQNLTKQ 2381
Query: 542 TEELKVRSHSTEPLPKLDNKERG 564
T S + +P+ ++ +G
Sbjct: 2382 TG----LSKNASSIPRSESASKG 2400
>gi|53759122 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 48.5 bits (114), Expect = 2e-05
Identities = 58/203 (28%), Positives = 85/203 (41%), Gaps = 25/203 (12%)
Query: 372 MKQPAGASPSTLPS-----HVPG--HAKLEKEQAAALGPASATPALSSSPPPPSTLYRTQ 424
MKQP A+ ++ H+PG ++ + GP TPA S SP T T
Sbjct: 2213 MKQPLQANMPSISRGRTMIHIPGVRNSSSSTSPVSKKGPPLKTPA-SKSPSEGQTA--TT 2269
Query: 425 SPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDAVHSGSLSRSSPSVPHSTP--RPVSQ 482
SP G S + SPV+ S S K P SGS S+PS P P RP+
Sbjct: 2270 SPRGAKPSVKSELSPVARQTSQIGGSSKAPS-----RSGSRD-STPSRPAQQPLSRPIQS 2323
Query: 483 DGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSGRSLLRKSSSGRR-SKEPAEKS 541
G ++ N G +P S+ P + S SSG + +S GR+ S++ K
Sbjct: 2324 PGRNSISPGRN--GISPPNKLSQLPRTSSPSTASTKSSGSGKMSYTSPGRQMSQQNLTKQ 2381
Query: 542 TEELKVRSHSTEPLPKLDNKERG 564
T S + +P+ ++ +G
Sbjct: 2382 TG----LSKNASSIPRSESASKG 2400
>gi|64084766 fidgetin [Homo sapiens]
Length = 759
Score = 47.8 bits (112), Expect = 3e-05
Identities = 68/287 (23%), Positives = 96/287 (33%), Gaps = 32/287 (11%)
Query: 293 SSQCATPTVPDLDFAKASVPCPPKGLLCDIPPPFPNLLSHRPPLLVFP-PAPVHCSPNSD 351
SS C + TVP L S P + + S P L P P+P+H S
Sbjct: 165 SSTCGSHTVPSLHAGLPSQEYAPGYNGSYLHSTYS---SQPAPALPSPHPSPLHSSGLLQ 221
Query: 352 ESPLTPLEVTKLPVLENVSYMKQPAGASPSTLPSHVPGHAKLEKEQAAALGPASATPALS 411
P P +P S + + S S P G + P A
Sbjct: 222 PPPPPPPPPALVPGYNGTSNLSSYSYPSASYPPQTAVG---------SGYSPGGA----- 267
Query: 412 SSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPL-----------SLKRPPPYDAV 460
PPPPS + P P +T P G LTP+ SLKR Y A
Sbjct: 268 --PPPPSAYLPSGIPAPTPLPPTTVPGYTYQGHGLTPIAPSALTNSSASSLKRKAFYMA- 324
Query: 461 HSGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSS 520
G + S + + R +M + +++ G RS +S + T S
Sbjct: 325 GQGDMDSSYGNYSYGQQRSTQSPMYRMPDNSISNTNRGNGFDRSAETSSLAFKPTKQLMS 384
Query: 521 GRSLLRKSSSGRRSKEPAEKSTEELKVRSHSTEPLPKLDNKERGHHG 567
+ SS R+ P ST + + S S+E K + HG
Sbjct: 385 SEQQRKFSSQSSRALTPPSYSTAKNSLGSRSSESFGKYTSPVMSEHG 431
Score = 30.8 bits (68), Expect = 4.2
Identities = 32/124 (25%), Positives = 43/124 (34%), Gaps = 29/124 (23%)
Query: 78 EVGRGHEGSYVGKHFRMGFMTMPAPQDRLPHPCSSGFSVRSQSLHSVGGTDDDSSCGSRR 137
E G+ GSY+ + + PAP PHP LHS G
Sbjct: 184 EYAPGYNGSYL----HSTYSSQPAPALPSPHP---------SPLHSSG----------LL 220
Query: 138 QPPPKPKRDPSTKLSTSSETVSSTAASKSGKTPERTEASA------KPRPHSDEYSKKIP 191
QPPP P P+ + + S+ + S P +T + P P S IP
Sbjct: 221 QPPPPPPPPPALVPGYNGTSNLSSYSYPSASYPPQTAVGSGYSPGGAPPPPSAYLPSGIP 280
Query: 192 PPKP 195
P P
Sbjct: 281 APTP 284
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 47.8 bits (112), Expect = 3e-05
Identities = 69/261 (26%), Positives = 93/261 (35%), Gaps = 57/261 (21%)
Query: 364 PVLENVSYMKQPAGASPSTLPSH--VPGHAKLEKEQAAALGPASATPALSS----SPPPP 417
P L SY GA PS P++ VP E P + +P S SPP P
Sbjct: 660 PALVTYSY----GGAVPSYCPAYGRVPHSCGSPGEGRGYPSPGAHSPRAGSISPGSPPYP 715
Query: 418 STL---YRTQSPHG---YP-KSHSTSPSPVSMGRSLTPLSLKRPP---------PYDAVH 461
+ Y + G YP H S P++ SL P+S + P P DA
Sbjct: 716 QSRKLSYEIPTEEGGDRYPLPGHLASAGPLASAESLEPVSWREGPSGHSTLPRSPRDAPC 775
Query: 462 SGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSG 521
S S S PS P T PV +R + SP T S G
Sbjct: 776 SASSELSGPSTPLHTSSPVQ----------------GKESTRRQDTRSPTSAPTQRLSPG 819
Query: 522 RSL--LRKSSSGRRSKEPAEKSTEELKVRSHSTEPLPKLDN---KER---GHHGASSSRE 573
+L + ++ +G+ + P+ E L S P + +ER GH +S R
Sbjct: 820 EALPPVSQAGTGKAPELPSGSGPEPLAPSPVSPTFPPSSPSDWPQERSPGGHSDGASPRS 879
Query: 574 PV-------KAQEWDGTPGPP 587
PV + W G GPP
Sbjct: 880 PVPTTLPGLRHAPWQGPRGPP 900
Score = 35.0 bits (79), Expect = 0.22
Identities = 38/148 (25%), Positives = 51/148 (34%), Gaps = 5/148 (3%)
Query: 95 GFMTMPAPQDRLPHPCSSGFSVRSQSLHSVGGTDDDSSCGSRRQPPPKPKRDPSTKLSTS 154
G T+P P SS S S LH+ S +RRQ P P+ +LS
Sbjct: 762 GHSTLPRSPRDAPCSASSELSGPSTPLHTSSPVQGKES--TRRQDTRSPTSAPTQRLSPG 819
Query: 155 SETVSSTAASKSGKTPERTEASAKPRPHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKK 214
E + + + +GK PE S S PP P P + S
Sbjct: 820 -EALPPVSQAGTGKAPELPSGSGPEPLAPSPVSPTFPPSSPSDWPQ-ERSPGGHSDGASP 877
Query: 215 HGPRRTSLPRDSSLSQMGSPAGDPEEEE 242
P T+LP G P G P+ +
Sbjct: 878 RSPVPTTLPGLRHAPWQG-PRGPPDSPD 904
Score = 30.0 bits (66), Expect = 7.2
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 403 PASATPALSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPP 456
P TP S PPP + S G+ + +T P+ S G RPPP
Sbjct: 365 PPRQTPPAPSPEPPPPPMLSVSSDSGHSSTLTTEPAAESPG---------RPPP 409
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 47.8 bits (112), Expect = 3e-05
Identities = 69/261 (26%), Positives = 93/261 (35%), Gaps = 57/261 (21%)
Query: 364 PVLENVSYMKQPAGASPSTLPSH--VPGHAKLEKEQAAALGPASATPALSS----SPPPP 417
P L SY GA PS P++ VP E P + +P S SPP P
Sbjct: 784 PALVTYSY----GGAVPSYCPAYGRVPHSCGSPGEGRGYPSPGAHSPRAGSISPGSPPYP 839
Query: 418 STL---YRTQSPHG---YP-KSHSTSPSPVSMGRSLTPLSLKRPP---------PYDAVH 461
+ Y + G YP H S P++ SL P+S + P P DA
Sbjct: 840 QSRKLSYEIPTEEGGDRYPLPGHLASAGPLASAESLEPVSWREGPSGHSTLPRSPRDAPC 899
Query: 462 SGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSG 521
S S S PS P T PV +R + SP T S G
Sbjct: 900 SASSELSGPSTPLHTSSPVQ----------------GKESTRRQDTRSPTSAPTQRLSPG 943
Query: 522 RSL--LRKSSSGRRSKEPAEKSTEELKVRSHSTEPLPKLDN---KER---GHHGASSSRE 573
+L + ++ +G+ + P+ E L S P + +ER GH +S R
Sbjct: 944 EALPPVSQAGTGKAPELPSGSGPEPLAPSPVSPTFPPSSPSDWPQERSPGGHSDGASPRS 1003
Query: 574 PV-------KAQEWDGTPGPP 587
PV + W G GPP
Sbjct: 1004 PVPTTLPGLRHAPWQGPRGPP 1024
Score = 35.0 bits (79), Expect = 0.22
Identities = 38/148 (25%), Positives = 51/148 (34%), Gaps = 5/148 (3%)
Query: 95 GFMTMPAPQDRLPHPCSSGFSVRSQSLHSVGGTDDDSSCGSRRQPPPKPKRDPSTKLSTS 154
G T+P P SS S S LH+ S +RRQ P P+ +LS
Sbjct: 886 GHSTLPRSPRDAPCSASSELSGPSTPLHTSSPVQGKES--TRRQDTRSPTSAPTQRLSPG 943
Query: 155 SETVSSTAASKSGKTPERTEASAKPRPHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKK 214
E + + + +GK PE S S PP P P + S
Sbjct: 944 -EALPPVSQAGTGKAPELPSGSGPEPLAPSPVSPTFPPSSPSDWPQ-ERSPGGHSDGASP 1001
Query: 215 HGPRRTSLPRDSSLSQMGSPAGDPEEEE 242
P T+LP G P G P+ +
Sbjct: 1002 RSPVPTTLPGLRHAPWQG-PRGPPDSPD 1028
Score = 30.0 bits (66), Expect = 7.2
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 403 PASATPALSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPP 456
P TP S PPP + S G+ + +T P+ S G RPPP
Sbjct: 489 PPRQTPPAPSPEPPPPPMLSVSSDSGHSSTLTTEPAAESPG---------RPPP 533
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 47.8 bits (112), Expect = 3e-05
Identities = 69/261 (26%), Positives = 93/261 (35%), Gaps = 57/261 (21%)
Query: 364 PVLENVSYMKQPAGASPSTLPSH--VPGHAKLEKEQAAALGPASATPALSS----SPPPP 417
P L SY GA PS P++ VP E P + +P S SPP P
Sbjct: 794 PALVTYSY----GGAVPSYCPAYGRVPHSCGSPGEGRGYPSPGAHSPRAGSISPGSPPYP 849
Query: 418 STL---YRTQSPHG---YP-KSHSTSPSPVSMGRSLTPLSLKRPP---------PYDAVH 461
+ Y + G YP H S P++ SL P+S + P P DA
Sbjct: 850 QSRKLSYEIPTEEGGDRYPLPGHLASAGPLASAESLEPVSWREGPSGHSTLPRSPRDAPC 909
Query: 462 SGSLSRSSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSG 521
S S S PS P T PV +R + SP T S G
Sbjct: 910 SASSELSGPSTPLHTSSPVQ----------------GKESTRRQDTRSPTSAPTQRLSPG 953
Query: 522 RSL--LRKSSSGRRSKEPAEKSTEELKVRSHSTEPLPKLDN---KER---GHHGASSSRE 573
+L + ++ +G+ + P+ E L S P + +ER GH +S R
Sbjct: 954 EALPPVSQAGTGKAPELPSGSGPEPLAPSPVSPTFPPSSPSDWPQERSPGGHSDGASPRS 1013
Query: 574 PV-------KAQEWDGTPGPP 587
PV + W G GPP
Sbjct: 1014 PVPTTLPGLRHAPWQGPRGPP 1034
Score = 35.0 bits (79), Expect = 0.22
Identities = 38/148 (25%), Positives = 51/148 (34%), Gaps = 5/148 (3%)
Query: 95 GFMTMPAPQDRLPHPCSSGFSVRSQSLHSVGGTDDDSSCGSRRQPPPKPKRDPSTKLSTS 154
G T+P P SS S S LH+ S +RRQ P P+ +LS
Sbjct: 896 GHSTLPRSPRDAPCSASSELSGPSTPLHTSSPVQGKES--TRRQDTRSPTSAPTQRLSPG 953
Query: 155 SETVSSTAASKSGKTPERTEASAKPRPHSDEYSKKIPPPKPKRNPNTQLSTSFDETYIKK 214
E + + + +GK PE S S PP P P + S
Sbjct: 954 -EALPPVSQAGTGKAPELPSGSGPEPLAPSPVSPTFPPSSPSDWPQ-ERSPGGHSDGASP 1011
Query: 215 HGPRRTSLPRDSSLSQMGSPAGDPEEEE 242
P T+LP G P G P+ +
Sbjct: 1012 RSPVPTTLPGLRHAPWQG-PRGPPDSPD 1038
Score = 30.0 bits (66), Expect = 7.2
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 403 PASATPALSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPP 456
P TP S PPP + S G+ + +T P+ S G RPPP
Sbjct: 499 PPRQTPPAPSPEPPPPPMLSVSSDSGHSSTLTTEPAAESPG---------RPPP 543
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.127 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,295,153
Number of Sequences: 37866
Number of extensions: 2141163
Number of successful extensions: 14848
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 1112
Number of HSP's that attempted gapping in prelim test: 10575
Number of HSP's gapped (non-prelim): 4709
length of query: 669
length of database: 18,247,518
effective HSP length: 109
effective length of query: 560
effective length of database: 14,120,124
effective search space: 7907269440
effective search space used: 7907269440
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.