Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239753305
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753305 PREDICTED: hypothetical protein [Homo sapiens]
(186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753305 PREDICTED: hypothetical protein [Homo sapiens] 380 e-106
gi|239747871 PREDICTED: hypothetical protein [Homo sapiens] 380 e-106
gi|239741751 PREDICTED: hypothetical protein XP_002342312 [Homo ... 380 e-106
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 45 3e-05
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 45 3e-05
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 36 0.022
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] 36 0.022
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 36 0.022
gi|4502247 armadillo repeat protein [Homo sapiens] 35 0.029
gi|117938759 GNAS complex locus XLas [Homo sapiens] 33 0.11
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 33 0.14
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ... 32 0.24
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ... 32 0.24
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 32 0.32
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 32 0.32
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 32 0.32
gi|226437579 NAC alpha domain containing [Homo sapiens] 32 0.41
gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens] 32 0.41
gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens] 32 0.41
gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens] 32 0.41
gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens] 32 0.41
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 31 0.54
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 31 0.54
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 31 0.54
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 31 0.70
gi|48762934 alpha 2 type I collagen [Homo sapiens] 31 0.70
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 31 0.70
gi|103471997 DNA-directed RNA polymerase I A [Homo sapiens] 30 0.92
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 30 0.92
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 30 0.92
>gi|239753305 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 380 bits (975), Expect = e-106
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MVLALEMDVALLLGSAVPEVRGVLACHPGVEVLKSPGAAPADFDPGSPGGLEAPAFLLDS 60
MVLALEMDVALLLGSAVPEVRGVLACHPGVEVLKSPGAAPADFDPGSPGGLEAPAFLLDS
Sbjct: 1 MVLALEMDVALLLGSAVPEVRGVLACHPGVEVLKSPGAAPADFDPGSPGGLEAPAFLLDS 60
Query: 61 IPSEVPETQDLGSLETLVRLGSHEDEEALAFLWDQVVPAYLEYPEAPVGPSDPEGQAGLG 120
IPSEVPETQDLGSLETLVRLGSHEDEEALAFLWDQVVPAYLEYPEAPVGPSDPEGQAGLG
Sbjct: 61 IPSEVPETQDLGSLETLVRLGSHEDEEALAFLWDQVVPAYLEYPEAPVGPSDPEGQAGLG 120
Query: 121 GLCDPVGQVDPEDPYDLEDQNYLVVQVALEVPKGHEVQDASAFLGAHACPEAVATPGAGP 180
GLCDPVGQVDPEDPYDLEDQNYLVVQVALEVPKGHEVQDASAFLGAHACPEAVATPGAGP
Sbjct: 121 GLCDPVGQVDPEDPYDLEDQNYLVVQVALEVPKGHEVQDASAFLGAHACPEAVATPGAGP 180
Query: 181 GAPVVP 186
GAPVVP
Sbjct: 181 GAPVVP 186
>gi|239747871 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 380 bits (975), Expect = e-106
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MVLALEMDVALLLGSAVPEVRGVLACHPGVEVLKSPGAAPADFDPGSPGGLEAPAFLLDS 60
MVLALEMDVALLLGSAVPEVRGVLACHPGVEVLKSPGAAPADFDPGSPGGLEAPAFLLDS
Sbjct: 1 MVLALEMDVALLLGSAVPEVRGVLACHPGVEVLKSPGAAPADFDPGSPGGLEAPAFLLDS 60
Query: 61 IPSEVPETQDLGSLETLVRLGSHEDEEALAFLWDQVVPAYLEYPEAPVGPSDPEGQAGLG 120
IPSEVPETQDLGSLETLVRLGSHEDEEALAFLWDQVVPAYLEYPEAPVGPSDPEGQAGLG
Sbjct: 61 IPSEVPETQDLGSLETLVRLGSHEDEEALAFLWDQVVPAYLEYPEAPVGPSDPEGQAGLG 120
Query: 121 GLCDPVGQVDPEDPYDLEDQNYLVVQVALEVPKGHEVQDASAFLGAHACPEAVATPGAGP 180
GLCDPVGQVDPEDPYDLEDQNYLVVQVALEVPKGHEVQDASAFLGAHACPEAVATPGAGP
Sbjct: 121 GLCDPVGQVDPEDPYDLEDQNYLVVQVALEVPKGHEVQDASAFLGAHACPEAVATPGAGP 180
Query: 181 GAPVVP 186
GAPVVP
Sbjct: 181 GAPVVP 186
>gi|239741751 PREDICTED: hypothetical protein XP_002342312 [Homo
sapiens]
Length = 186
Score = 380 bits (975), Expect = e-106
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MVLALEMDVALLLGSAVPEVRGVLACHPGVEVLKSPGAAPADFDPGSPGGLEAPAFLLDS 60
MVLALEMDVALLLGSAVPEVRGVLACHPGVEVLKSPGAAPADFDPGSPGGLEAPAFLLDS
Sbjct: 1 MVLALEMDVALLLGSAVPEVRGVLACHPGVEVLKSPGAAPADFDPGSPGGLEAPAFLLDS 60
Query: 61 IPSEVPETQDLGSLETLVRLGSHEDEEALAFLWDQVVPAYLEYPEAPVGPSDPEGQAGLG 120
IPSEVPETQDLGSLETLVRLGSHEDEEALAFLWDQVVPAYLEYPEAPVGPSDPEGQAGLG
Sbjct: 61 IPSEVPETQDLGSLETLVRLGSHEDEEALAFLWDQVVPAYLEYPEAPVGPSDPEGQAGLG 120
Query: 121 GLCDPVGQVDPEDPYDLEDQNYLVVQVALEVPKGHEVQDASAFLGAHACPEAVATPGAGP 180
GLCDPVGQVDPEDPYDLEDQNYLVVQVALEVPKGHEVQDASAFLGAHACPEAVATPGAGP
Sbjct: 121 GLCDPVGQVDPEDPYDLEDQNYLVVQVALEVPKGHEVQDASAFLGAHACPEAVATPGAGP 180
Query: 181 GAPVVP 186
GAPVVP
Sbjct: 181 GAPVVP 186
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 45.4 bits (106), Expect = 3e-05
Identities = 37/107 (34%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 27 HPGVEVLKSPGAAPADFDP-GSPGGLEAPAFLLDSIPSEVPETQDLGSLETLVRLGSHED 85
H G L P P + P G PG P F + E P S+ETL RL E
Sbjct: 868 HKGHTGLMGPQGLPGENGPVGPPGPPGQPGF--PGLRGESP------SMETLRRLIQEEL 919
Query: 86 ----EEALAFLWDQVVPAYLEYPEAPVGPSDPEGQAGLGGLCDPVGQ 128
E LA+L Q+ PAY++ + GP P G+ GL G P+G+
Sbjct: 920 GKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAGPMGE 966
Score = 28.9 bits (63), Expect = 2.7
Identities = 50/186 (26%), Positives = 59/186 (31%), Gaps = 37/186 (19%)
Query: 28 PGVEVLKSPGAAPADFDPGSPGGLEAPAFLLDSIPSEVPETQDLGSLETLVRLGSHEDEE 87
PG+ V PG + D GSPG P F P Q + L L S D
Sbjct: 504 PGIGVAGPPGPSGPPGDKGSPGSRGLPGF---------PGPQGPAGRDGLSSLLSPGDIN 554
Query: 88 ALA-------------------FLWDQVVPAY--LEYPEAPVGPSDPEGQAGLGGLCDPV 126
LA F D+ VP E E G + P G G G+ P
Sbjct: 555 LLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQ 614
Query: 127 GQVDPEDPYDLE-----DQNYLVVQVALEVPKGHEVQDASAFLGAHACPEAVATPG-AGP 180
G E D E DQ + V + P A GA P +PG GP
Sbjct: 615 GS-QGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGP 673
Query: 181 GAPVVP 186
P P
Sbjct: 674 PGPQGP 679
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 45.4 bits (106), Expect = 3e-05
Identities = 37/107 (34%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 27 HPGVEVLKSPGAAPADFDP-GSPGGLEAPAFLLDSIPSEVPETQDLGSLETLVRLGSHED 85
H G L P P + P G PG P F + E P S+ETL RL E
Sbjct: 1421 HKGHTGLMGPQGLPGENGPVGPPGPPGQPGF--PGLRGESP------SMETLRRLIQEEL 1472
Query: 86 ----EEALAFLWDQVVPAYLEYPEAPVGPSDPEGQAGLGGLCDPVGQ 128
E LA+L Q+ PAY++ + GP P G+ GL G P+G+
Sbjct: 1473 GKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAGPMGE 1519
>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]
Length = 170
Score = 35.8 bits (81), Expect = 0.022
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Query: 51 LEAPAFLLDSIPSEVPETQDLGSLETLVRLGSHEDEEALAFLWDQVVPAYL--------- 101
+EAPA LL ++P+ + L LVR G+ E + PA
Sbjct: 1 MEAPAELLAALPA-LATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRP 59
Query: 102 ---EYPEAPVGPSDPEGQAGLGGLCDPVGQVDPEDPYD 136
E +P GP +P AGLG L +P G +PE P D
Sbjct: 60 CAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGD 97
>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens]
Length = 177
Score = 35.8 bits (81), Expect = 0.022
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Query: 51 LEAPAFLLDSIPSEVPETQDLGSLETLVRLGSHEDEEALAFLWDQVVPAYL--------- 101
+EAPA LL ++P+ + L LVR G+ E + PA
Sbjct: 1 MEAPAELLAALPA-LATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRP 59
Query: 102 ---EYPEAPVGPSDPEGQAGLGGLCDPVGQVDPEDPYD 136
E +P GP +P AGLG L +P G +PE P D
Sbjct: 60 CAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGD 97
>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]
Length = 204
Score = 35.8 bits (81), Expect = 0.022
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Query: 51 LEAPAFLLDSIPSEVPETQDLGSLETLVRLGSHEDEEALAFLWDQVVPAYL--------- 101
+EAPA LL ++P+ + L LVR G+ E + PA
Sbjct: 1 MEAPAELLAALPA-LATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRP 59
Query: 102 ---EYPEAPVGPSDPEGQAGLGGLCDPVGQVDPEDPYD 136
E +P GP +P AGLG L +P G +PE P D
Sbjct: 60 CAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGD 97
>gi|4502247 armadillo repeat protein [Homo sapiens]
Length = 962
Score = 35.4 bits (80), Expect = 0.029
Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 44 DPGSPGGLEAPAFLLDSIPSEVPETQDLGSLETLVRLGSHEDEEALAFLW-DQVVPAYLE 102
D G E PAF + + P PE +GSL+ LVR D W D +P L
Sbjct: 306 DDGGELADERPAFPMVTAPLAQPERGSMGSLDRLVRRSPSVDSARKEPRWRDPELPEVLA 365
Query: 103 YPEAPVGPSDPEGQAGLGGLC 123
PV P A L LC
Sbjct: 366 MLRHPVDPVKANAAAYLQHLC 386
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 33.5 bits (75), Expect = 0.11
Identities = 42/152 (27%), Positives = 52/152 (34%), Gaps = 31/152 (20%)
Query: 35 SPGAAPADFDPGSPGGLEAPAFLLDSIPSEVPETQDLGSLETLVRLGSHEDEEALAFLWD 94
SP A A D + APA D PE D G+ D ++ AF D
Sbjct: 380 SPAAGAASADTAARAAPAAPA---DPDSGATPEDPDSGTAPA--------DPDSGAFAAD 428
Query: 95 QVVPAYLEYPEAPVGPSDPEGQAGLGGLCDPVGQVDPEDPYDLEDQNYLVVQVALEVPKG 154
A AP P+DP+ A DP P+ P D + A P+
Sbjct: 429 PDSGA------APAAPADPDSGAAPDAPADPDSGAAPDAPADPD---------AGAAPEA 473
Query: 155 HEVQDASAFLGAHACPEAVATPGAGPGAPVVP 186
A+ AH P A P A GAP P
Sbjct: 474 PAAPAAAETRAAHVAP---AAPDA--GAPTAP 500
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 33.1 bits (74), Expect = 0.14
Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 36 PGAAPADFDPGSPG--GLEAPAFLLDSIPSEVPETQDLGSLETLVRLGSHEDEEALAFLW 93
PG PG PG GL P + +P D GS +V S ++ +A A L
Sbjct: 495 PGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMV---SAQESQAQAIL- 550
Query: 94 DQVVPAYLEYPEAPVGPSD---PEGQAGLGGLCDPVGQVDPEDP 134
Q L P P+G + P G G GGL G V P+ P
Sbjct: 551 -QQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGP 593
Score = 29.6 bits (65), Expect = 1.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 98 PAYLEYPEAPVGPSDPEGQAGLGGLCDPVGQVDPE 132
P L P+ P GP P G G+ G P G V P+
Sbjct: 680 PRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQ 714
>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
Length = 492
Score = 32.3 bits (72), Expect = 0.24
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 12 LLGSAVPEVRGVLACHPGVEVLKSPGAA------PADFDPGSPGGLEAPAFLLDSIPSEV 65
L G+ P R L PG +++ GAA PA PG L P L D
Sbjct: 413 LAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDLSVGVS 472
Query: 66 PETQDLGSLETLVRLGS 82
+ LGS E +GS
Sbjct: 473 AASSSLGSTELEKNMGS 489
>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
sapiens]
Length = 492
Score = 32.3 bits (72), Expect = 0.24
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 12 LLGSAVPEVRGVLACHPGVEVLKSPGAA------PADFDPGSPGGLEAPAFLLDSIPSEV 65
L G+ P R L PG +++ GAA PA PG L P L D
Sbjct: 413 LAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDLSVGVS 472
Query: 66 PETQDLGSLETLVRLGS 82
+ LGS E +GS
Sbjct: 473 AASSSLGSTELEKNMGS 489
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 32.0 bits (71), Expect = 0.32
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 18/86 (20%)
Query: 60 SIPSEVPETQDLGSLETLVRLGSHEDEEALAF--------LWDQVVPAYLEYPEAPVGPS 111
++ + V +T+D G E V+ DEE +A WD P+ + E+PV
Sbjct: 397 NMEANVAQTED-GPPEAEVQALILLDEEVMALSPPSPPTATWD---PSPTQAKESPVAAG 452
Query: 112 D------PEGQAGLGGLCDPVGQVDP 131
+ PEGQ GGLC P+ Q P
Sbjct: 453 EAGPDWFPEGQEEDGGLCPPLNQSSP 478
Score = 27.7 bits (60), Expect = 5.9
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 14 GSAVPEVRGVLACHPGVEVLKSPGAAPADFDPGSPGGLEAPAFLLDSIPSEVPETQDL-G 72
G EV+ ++ V L P A +DP E+P ++ P PE Q+ G
Sbjct: 408 GPPEAEVQALILLDEEVMALSPPSPPTATWDPSPTQAKESPVAAGEAGPDWFPEGQEEDG 467
Query: 73 SLETLVRLGSHEDEEALAFLWDQVVPAYLEYPEAPVGPSDP 113
L + S +E +PA + PE P P P
Sbjct: 468 GLCPPLNQSSPTSKEG------GTLPAPVGSPEDPSDPPQP 502
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 32.0 bits (71), Expect = 0.32
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 18/86 (20%)
Query: 60 SIPSEVPETQDLGSLETLVRLGSHEDEEALAF--------LWDQVVPAYLEYPEAPVGPS 111
++ + V +T+D G E V+ DEE +A WD P+ + E+PV
Sbjct: 313 NMEANVAQTED-GPPEAEVQALILLDEEVMALSPPSPPTATWD---PSPTQAKESPVAAG 368
Query: 112 D------PEGQAGLGGLCDPVGQVDP 131
+ PEGQ GGLC P+ Q P
Sbjct: 369 EAGPDWFPEGQEEDGGLCPPLNQSSP 394
Score = 27.7 bits (60), Expect = 5.9
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 14 GSAVPEVRGVLACHPGVEVLKSPGAAPADFDPGSPGGLEAPAFLLDSIPSEVPETQDL-G 72
G EV+ ++ V L P A +DP E+P ++ P PE Q+ G
Sbjct: 324 GPPEAEVQALILLDEEVMALSPPSPPTATWDPSPTQAKESPVAAGEAGPDWFPEGQEEDG 383
Query: 73 SLETLVRLGSHEDEEALAFLWDQVVPAYLEYPEAPVGPSDP 113
L + S +E +PA + PE P P P
Sbjct: 384 GLCPPLNQSSPTSKEG------GTLPAPVGSPEDPSDPPQP 418
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 32.0 bits (71), Expect = 0.32
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 18/86 (20%)
Query: 60 SIPSEVPETQDLGSLETLVRLGSHEDEEALAF--------LWDQVVPAYLEYPEAPVGPS 111
++ + V +T+D G E V+ DEE +A WD P+ + E+PV
Sbjct: 313 NMEANVAQTED-GPPEAEVQALILLDEEVMALSPPSPPTATWD---PSPTQAKESPVAAG 368
Query: 112 D------PEGQAGLGGLCDPVGQVDP 131
+ PEGQ GGLC P+ Q P
Sbjct: 369 EAGPDWFPEGQEEDGGLCPPLNQSSP 394
Score = 27.7 bits (60), Expect = 5.9
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 14 GSAVPEVRGVLACHPGVEVLKSPGAAPADFDPGSPGGLEAPAFLLDSIPSEVPETQDL-G 72
G EV+ ++ V L P A +DP E+P ++ P PE Q+ G
Sbjct: 324 GPPEAEVQALILLDEEVMALSPPSPPTATWDPSPTQAKESPVAAGEAGPDWFPEGQEEDG 383
Query: 73 SLETLVRLGSHEDEEALAFLWDQVVPAYLEYPEAPVGPSDP 113
L + S +E +PA + PE P P P
Sbjct: 384 GLCPPLNQSSPTSKEG------GTLPAPVGSPEDPSDPPQP 418
>gi|226437579 NAC alpha domain containing [Homo sapiens]
Length = 1562
Score = 31.6 bits (70), Expect = 0.41
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 25/153 (16%)
Query: 51 LEAPAFLLDSIPSEVPETQDLGSLETL-VRLGSHEDEEALAFLWDQVVPAYLEYPEAPVG 109
+ AP L D+ P+ PE + + +TL G E +A + Q V L AP
Sbjct: 922 MTAPLPLQDTGPTSGPEPLAVATPQTLQAEAGCAPGTEPVATMAQQEVGEALGPRPAPEE 981
Query: 110 -----PSDPEGQAGLGGLCDPVGQVDPEDPYDL-------EDQNYLVVQVALEVPK---- 153
P+ PE A D V Q DP+ + ED + + AL +P+
Sbjct: 982 KNAALPTVPEPAA-----LDQVQQDDPQPAAEAGTPWAAQEDADSTLGMEALSLPEPASG 1036
Query: 154 -GHEVQDASAFLGAHACPEAVATPGAG--PGAP 183
G E+ +A + G AC EA A G G P +P
Sbjct: 1037 AGEEIAEALSRPGREACLEARAHTGDGAKPDSP 1069
>gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 31.6 bits (70), Expect = 0.41
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 25/153 (16%)
Query: 51 LEAPAFLLDSIPSEVPETQDLGSLETL-VRLGSHEDEEALAFLWDQVVPAYLEYPEAPVG 109
+ AP L D+ P+ PE + + +TL G E +A + Q V L AP
Sbjct: 882 MTAPLPLQDTGPTSGPEPLAVATPQTLQAEAGCAPGTEPVATMAQQEVGEALGPRPAPEE 941
Query: 110 -----PSDPEGQAGLGGLCDPVGQVDPEDPYDL-------EDQNYLVVQVALEVPK---- 153
P+ PE A D V Q DP+ + ED + + AL +P+
Sbjct: 942 KNAALPTVPEPAA-----LDQVQQDDPQPAAEAGTPWAAQEDADSTLGMEALSLPEPASG 996
Query: 154 -GHEVQDASAFLGAHACPEAVATPGAG--PGAP 183
G E+ +A + G AC EA A G G P +P
Sbjct: 997 AGEEIAEALSRPGREACLEARAHTGDGAKPDSP 1029
>gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 31.6 bits (70), Expect = 0.41
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 25/153 (16%)
Query: 51 LEAPAFLLDSIPSEVPETQDLGSLETL-VRLGSHEDEEALAFLWDQVVPAYLEYPEAPVG 109
+ AP L D+ P+ PE + + +TL G E +A + Q V L AP
Sbjct: 882 MTAPLPLQDTGPTSGPEPLAVATPQTLQAEAGCAPGTEPVATMAQQEVGEALGPRPAPEE 941
Query: 110 -----PSDPEGQAGLGGLCDPVGQVDPEDPYDL-------EDQNYLVVQVALEVPK---- 153
P+ PE A D V Q DP+ + ED + + AL +P+
Sbjct: 942 KNAALPTVPEPAA-----LDQVQQDDPQPAAEAGTPWAAQEDADSTLGMEALSLPEPASG 996
Query: 154 -GHEVQDASAFLGAHACPEAVATPGAG--PGAP 183
G E+ +A + G AC EA A G G P +P
Sbjct: 997 AGEEIAEALSRPGREACLEARAHTGDGAKPDSP 1029
>gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1562
Score = 31.6 bits (70), Expect = 0.41
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 25/153 (16%)
Query: 51 LEAPAFLLDSIPSEVPETQDLGSLETL-VRLGSHEDEEALAFLWDQVVPAYLEYPEAPVG 109
+ AP L D+ P+ PE + + +TL G E +A + Q V L AP
Sbjct: 922 MTAPLPLQDTGPTSGPEPLAVATPQTLQAEAGCAPGTEPVATMAQQEVGEALGPRPAPEE 981
Query: 110 -----PSDPEGQAGLGGLCDPVGQVDPEDPYDL-------EDQNYLVVQVALEVPK---- 153
P+ PE A D V Q DP+ + ED + + AL +P+
Sbjct: 982 KNAALPTVPEPAA-----LDQVQQDDPQPAAEAGTPWAAQEDADSTLGMEALSLPEPASG 1036
Query: 154 -GHEVQDASAFLGAHACPEAVATPGAG--PGAP 183
G E+ +A + G AC EA A G G P +P
Sbjct: 1037 AGEEIAEALSRPGREACLEARAHTGDGAKPDSP 1069
>gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 31.6 bits (70), Expect = 0.41
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 25/153 (16%)
Query: 51 LEAPAFLLDSIPSEVPETQDLGSLETL-VRLGSHEDEEALAFLWDQVVPAYLEYPEAPVG 109
+ AP L D+ P+ PE + + +TL G E +A + Q V L AP
Sbjct: 882 MTAPLPLQDTGPTSGPEPLAVATPQTLQAEAGCAPGTEPVATMAQQEVGEALGPRPAPEE 941
Query: 110 -----PSDPEGQAGLGGLCDPVGQVDPEDPYDL-------EDQNYLVVQVALEVPK---- 153
P+ PE A D V Q DP+ + ED + + AL +P+
Sbjct: 942 KNAALPTVPEPAA-----LDQVQQDDPQPAAEAGTPWAAQEDADSTLGMEALSLPEPASG 996
Query: 154 -GHEVQDASAFLGAHACPEAVATPGAG--PGAP 183
G E+ +A + G AC EA A G G P +P
Sbjct: 997 AGEEIAEALSRPGREACLEARAHTGDGAKPDSP 1029
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 31.2 bits (69), Expect = 0.54
Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 16/101 (15%)
Query: 35 SPGAAPADFDPGSPGGLEAPAFLLDSIPSEVPETQDLGSLETLVRLGSHEDEEALAFLWD 94
+PG D +PG+PG P P P LG G +++
Sbjct: 145 APGPRGRDGEPGTPGNPGPPG------PPGPPGPPGLGGNFAAQMAGGFDEKAG------ 192
Query: 95 QVVPAYLEYPEAPVGPSDPEGQAGLGGLCDPVG-QVDPEDP 134
A L + P+GP P G G G P G Q +P +P
Sbjct: 193 ---GAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEP 230
Score = 29.3 bits (64), Expect = 2.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 98 PAYLEYPEAPVGPSDPEGQAGLGGLCDPVGQVDP 131
PA P P GP P G+ G G+ P+G P
Sbjct: 1156 PAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGP 1189
Score = 27.3 bits (59), Expect = 7.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 107 PVGPSDPEGQAGLGGLCDPVGQVDPEDP 134
P+GP P G++G G P G P P
Sbjct: 1183 PIGPPGPRGRSGETGPAGPPGNPGPPGP 1210
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 31.2 bits (69), Expect = 0.54
Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 16/101 (15%)
Query: 35 SPGAAPADFDPGSPGGLEAPAFLLDSIPSEVPETQDLGSLETLVRLGSHEDEEALAFLWD 94
+PG D +PG+PG P P P LG G +++
Sbjct: 76 APGPRGRDGEPGTPGNPGPPG------PPGPPGPPGLGGNFAAQMAGGFDEKAG------ 123
Query: 95 QVVPAYLEYPEAPVGPSDPEGQAGLGGLCDPVG-QVDPEDP 134
A L + P+GP P G G G P G Q +P +P
Sbjct: 124 ---GAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEP 161
Score = 29.3 bits (64), Expect = 2.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 98 PAYLEYPEAPVGPSDPEGQAGLGGLCDPVGQVDP 131
PA P P GP P G+ G G+ P+G P
Sbjct: 1087 PAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGP 1120
Score = 27.3 bits (59), Expect = 7.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 107 PVGPSDPEGQAGLGGLCDPVGQVDPEDP 134
P+GP P G++G G P G P P
Sbjct: 1114 PIGPPGPRGRSGETGPAGPPGNPGPPGP 1141
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 31.2 bits (69), Expect = 0.54
Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 12/107 (11%)
Query: 33 LKSPGAAPADFDPGSPGGL-------EAPAFLLDSIPSEVPETQDLGSLETLVRLGSHED 85
L P P PG PGG E + +P E + GS+ + RL
Sbjct: 1891 LPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAG 1950
Query: 86 EEALAF-----LWDQVVPAYLEYPEAPVGPSDPEGQAGLGGLCDPVG 127
+A A WD+ ++L PE GP G+ G G P+G
Sbjct: 1951 IKASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPPGKEGPIG 1997
Score = 27.7 bits (60), Expect = 5.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 108 VGPSDPEGQAGLGGLCDPVGQVDPEDP 134
VGP+ P G G+ G P G V P DP
Sbjct: 1559 VGPAGPRGATGVQGERGPPGLVLPGDP 1585
Score = 27.3 bits (59), Expect = 7.8
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 25/116 (21%)
Query: 14 GSA-VPEVRGVLACHPGVEVLKSPGAAPADFDPGSPGGLEAPAFLLDSIPSEVPETQDLG 72
GSA +P +RG+L PGAA DPGSPG D +P E D+G
Sbjct: 2572 GSAGLPGLRGLLGPQG------QPGAAGIPGDPGSPG--------KDGVPGIRGEKGDVG 2617
Query: 73 SLETLVRLGSHEDEEALAFLWDQVVPAYLEYPEAPVGPSDPEGQAGLGGLCDPVGQ 128
+ G + A L+ + G + P G+ GL G +G+
Sbjct: 2618 FMGPRGLKGERGVKGACG----------LDGEKGDKGEAGPPGRPGLAGHKGEMGE 2663
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 30.8 bits (68), Expect = 0.70
Identities = 31/96 (32%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
Query: 34 KSPGAA-PADFDPGSPGGLEAPAFLLDSIPSEVPETQDLGSLETLVRLGSHEDEEALAFL 92
+SP AA P+ PG+ GGL P L PS + G +LG E +L
Sbjct: 934 RSPQAAQPSPAPPGARGGLGLPEHFLPPPPSSRSPSSSPG------QLGQPPGELSLG-- 985
Query: 93 WDQVVPAYLEYPEAPV-GPSDPEGQAGLGGLCDPVG 127
+ L PE P P P AG G PVG
Sbjct: 986 ---LATGPLSTPETPPRQPEPPSLVAGASGGASPVG 1018
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 30.8 bits (68), Expect = 0.70
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 107 PVGPSDPEGQAGLGGLCDPVG 127
P GP+ P G+ GL GL PVG
Sbjct: 275 PAGPAGPRGEVGLPGLSGPVG 295
Score = 29.6 bits (65), Expect = 1.6
Identities = 27/102 (26%), Positives = 33/102 (32%), Gaps = 27/102 (26%)
Query: 107 PVGPSDPEGQAGLGGLCDPVGQVDPEDPYDLEDQNYLVVQVALEVPKGHEVQDASAFL-- 164
P GP P+G G G+ VG P P L + + A +P G +
Sbjct: 611 PSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGE-----RGAAGIPGGKGEKGEPGLRGE 665
Query: 165 -------GAHACPEAVATPG-------------AGPGAPVVP 186
GA P AV PG AGP P P
Sbjct: 666 IGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGP 707
Score = 28.9 bits (63), Expect = 2.7
Identities = 47/183 (25%), Positives = 66/183 (36%), Gaps = 21/183 (11%)
Query: 17 VPEVRGVLACHPGVEVLKSPGAAPADFDPGSPGGLEAPAFLLDSIPSEVPETQDLGSLET 76
+P V G + + + PGA G PG + +P ++ P E + G+
Sbjct: 884 LPGVAGAVGEPGPLGIAGPPGAR------GPPGAVGSPG--VNGAPGEAGRDGNPGNDGP 935
Query: 77 LVRLGS--HEDEEALAFLWDQVVPAYLEYPEAPVGPSDP---EGQAGLGGLCDPVGQVDP 131
R G H+ E V A P PVGP+ G+ G G P G V P
Sbjct: 936 PGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGP 995
Query: 132 EDPYDLE----DQNYLVVQVALEVP--KGHE-VQDASAFLGAHACPEAVATPG-AGPGAP 183
P + D+ + +P KGH +Q G H A + G AGP P
Sbjct: 996 RGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGP 1055
Query: 184 VVP 186
P
Sbjct: 1056 AGP 1058
Score = 28.5 bits (62), Expect = 3.5
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 44 DPGSPGGLEAPAFLLDSIPSEVPETQDLGSLETLVRLGSHEDEEALAFLWDQVVPAYLEY 103
D G PG + P +P + L+ L + H ++ V PA
Sbjct: 1007 DKGEPG---------EKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAP---GSVGPAGPRG 1054
Query: 104 PEAPVGPSDPEGQAGLGGLCDPVGQVDPE 132
P P GP+ +G+ G G P G P+
Sbjct: 1055 PAGPSGPAGKDGRTGHPGTVGPAGIRGPQ 1083
Score = 27.3 bits (59), Expect = 7.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 104 PEAPVGPSDPEGQAGLGGLCDPVGQVDPEDP 134
P P G P G++G G P+G P P
Sbjct: 584 PAGPRGERGPPGESGAAGPTGPIGSRGPSGP 614
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 30.8 bits (68), Expect = 0.70
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 104 PEAPVGPSDPEGQAGLGGLCDPVGQVDP 131
P PVGPS P G+ G G P+G P
Sbjct: 1138 PRGPVGPSGPPGKDGTSGHPGPIGPPGP 1165
>gi|103471997 DNA-directed RNA polymerase I A [Homo sapiens]
Length = 1720
Score = 30.4 bits (67), Expect = 0.92
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 84 EDEEALAFLWDQVVPAYLEYPEAPVGPSDPEGQAGLGGLCDPVGQVDP-EDPYDLEDQNY 142
++E L D +PA L P P +P+G + V ++ P D Y + +
Sbjct: 1463 DEEVGLGTEEDPSLPALLTQPRKPTHSQEPQGPEAMERRVQAVREIHPFIDDYQYDTEES 1522
Query: 143 LVVQVALEVP 152
L QV +++P
Sbjct: 1523 LWCQVTVKLP 1532
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 30.4 bits (67), Expect = 0.92
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 24/81 (29%)
Query: 105 EAPVGPSDPEGQAGLG--GLCDPVGQVDPEDPYDLEDQNYLVVQVALEVPKGHEVQDASA 162
+ P+GP P+G AG G G VGQ+ P P V + ++ PKG
Sbjct: 460 QGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRG-------PVGIGVQGPKGE------- 505
Query: 163 FLGAHACPEAVATPGAGPGAP 183
P ++ PG PG P
Sbjct: 506 -------PGSIGLPGQ-PGVP 518
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 30.4 bits (67), Expect = 0.92
Identities = 28/108 (25%), Positives = 37/108 (34%), Gaps = 15/108 (13%)
Query: 28 PGVEVLKSPGAAPADFDPGSPGGLEAPAFLLDSIPSEVPETQDLGSLETLVRL-GSHEDE 86
PG + P P G P G P P +P QD+ + + R G H
Sbjct: 629 PGPQGQMGPQGPPLHQGGGGPQGFMGPQGP-QGPPQGLPRPQDMHGPQGMQRHPGPHG-- 685
Query: 87 EALAFLWDQVVPAYLEYPEAPVGPSDPEGQAGLGGLCDPVGQVDPEDP 134
P + P P G S P+G G G P G + P+ P
Sbjct: 686 -----------PLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGP 722
Score = 27.3 bits (59), Expect = 7.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 104 PEAPVGPSDPEGQAGLGGLCDPVGQVDPEDPYDLE 138
P+ +GP P G G+ G P G P P+ ++
Sbjct: 725 PQGHLGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQ 759
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.137 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,432,141
Number of Sequences: 37866
Number of extensions: 514617
Number of successful extensions: 2614
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 1874
Number of HSP's gapped (non-prelim): 785
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.