Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100288089 Sequence: fasta or formatted (186aa) NCBI GI: 239741751
Description:

PREDICTED: hypothetical protein XP_002342312

Not currently referenced in the text

Other entries for this name:
alt mRNA {186aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         23           2
 C cysteine            1.6          3           1
 D aspartate           7.5         14           1
 E glutamate           9.7         18           2
 F phenylalanine       2.2          4           1
 G glycine            10.8         20           2
 H histidine           2.2          4           1
 I isoleucine          0.5          1           1
 K lysine              1.1          2           1
 L leucine            12.4         23           3
 M methionine          1.1          2           1
 N asparagine          0.5          1           1
 P proline            12.4         23           1
 Q glutamine           3.8          7           1
 R arginine            1.1          2           1
 S serine              4.8          9           1
 T threonine           1.6          3           1
 V valine             11.8         22           2
 W tryptophan          0.5          1           1
 Y tyrosine            2.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342312 
LOC100293529          1.000   PREDICTED: hypothetical protein 
LOC100288089          1.000   PREDICTED: hypothetical protein 
LOC100293055          0.056   PREDICTED: similar to COL22A1 protein 
COL22A1               0.056   collagen, type XXII, alpha 1 
MXRA7                 0.031   transmembrane anchor protein 1 isoform 3 
MXRA7                 0.031   transmembrane anchor protein 1 isoform 2 
MXRA7                 0.031   transmembrane anchor protein 1 isoform 1 
ARVCF                 0.028   armadillo repeat protein 
GNAS                  0.023   GNAS complex locus XLas 
COL5A1                0.023   alpha 1 type V collagen preproprotein 
LOC100290783          0.020   PREDICTED: hypothetical protein XP_002347614 
LOC100288864          0.020   PREDICTED: hypothetical protein XP_002343435 
ZFHX2                 0.020   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.020   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.020   PREDICTED: zinc finger homeobox 2 
NACAD                 0.020   NAC alpha domain containing 
NACAD                 0.020   PREDICTED: NAC alpha domain containing 
NACAD                 0.020   PREDICTED: NAC alpha domain containing 
NACAD                 0.020   PREDICTED: NAC alpha domain containing 
NACAD                 0.020   PREDICTED: NAC alpha domain containing 
COL2A1                0.017   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.017   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL7A1                0.017   alpha 1 type VII collagen precursor 
HCN4                  0.017   hyperpolarization activated cyclic nucleotide-gated p...
COL1A2                0.017   alpha 2 type I collagen 
COL3A1                0.017   collagen type III alpha 1 preproprotein 
POLR1A                0.014   DNA-directed RNA polymerase I A 
COL28A1               0.014   collagen, type XXVIII precursor 
WDR33                 0.014   WD repeat domain 33 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press