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Search of human proteins with 239753283
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753283 PREDICTED: hypothetical protein [Homo sapiens]
(131 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753283 PREDICTED: hypothetical protein [Homo sapiens] 270 3e-73
gi|169211906 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|169211049 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax ... 34 0.029
gi|169173182 PREDICTED: hypothetical protein [Homo sapiens] 33 0.064
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 32 0.11
gi|169167792 PREDICTED: similar to hCG1745223 [Homo sapiens] 32 0.14
gi|239752133 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239749542 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|88987622 PREDICTED: similar to hCG1745223 [Homo sapiens] 32 0.14
gi|239746658 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239743694 PREDICTED: hypothetical protein XP_002342927 [Homo ... 32 0.14
gi|51464815 PREDICTED: similar to hCG1745223 [Homo sapiens] 32 0.14
gi|148727255 microtubule associated serine/threonine kinase fami... 32 0.14
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu... 32 0.19
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec... 32 0.19
gi|169214872 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|113429040 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|113428887 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|109389358 transcription factor AP-2 alpha isoform c [Homo sap... 32 0.19
gi|73760407 transcription factor AP-2 alpha isoform b [Homo sapi... 32 0.19
gi|4507441 transcription factor AP-2 alpha isoform a [Homo sapiens] 32 0.19
gi|209413756 synapsin III isoform IIIg [Homo sapiens] 31 0.24
gi|209413752 synapsin III isoform IIIa [Homo sapiens] 31 0.24
gi|23308585 G protein-coupled receptor 156 [Homo sapiens] 31 0.32
gi|163965366 nascent polypeptide-associated complex alpha subuni... 30 0.41
gi|62912482 high mobility group AT-hook 2 isoform b [Homo sapiens] 30 0.54
gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens] 30 0.54
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 30 0.54
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 30 0.54
>gi|239753283 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 270 bits (689), Expect = 3e-73
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MASKGQPYFVEVQAPELVTSMGREEGGLAGRLGRQCVSRQAAAGSRGPLLAGSLLAHLAE 60
MASKGQPYFVEVQAPELVTSMGREEGGLAGRLGRQCVSRQAAAGSRGPLLAGSLLAHLAE
Sbjct: 1 MASKGQPYFVEVQAPELVTSMGREEGGLAGRLGRQCVSRQAAAGSRGPLLAGSLLAHLAE 60
Query: 61 QRQWWLVPPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPSELPEMG 120
QRQWWLVPPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPSELPEMG
Sbjct: 61 QRQWWLVPPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPSELPEMG 120
Query: 121 KGSRHPTGRKV 131
KGSRHPTGRKV
Sbjct: 121 KGSRHPTGRKV 131
>gi|169211906 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 35.4 bits (80), Expect = 0.013
Identities = 36/120 (30%), Positives = 43/120 (35%), Gaps = 22/120 (18%)
Query: 7 PYFVEVQAPELVTSMGREEGGLAGRLGRQCVSRQAAAGSRGPLLAGSLLAHLAEQRQWWL 66
P + AP+L + R R R CVSR + G R P A R W
Sbjct: 69 PLGADTSAPDLSRTSSR----CRRRRRRGCVSRLGSEGGRRP----------ARHRPTW- 113
Query: 67 VPPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPSELPEMGKGSRHP 126
P P Q P+ SL P PA PE R RG Q P E ++HP
Sbjct: 114 -PRRAEP---QVPEECSL---PAGVLPAQHGPEPRPRGLQPAAHQLPGERGRGSTAAQHP 166
>gi|169211049 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 35.4 bits (80), Expect = 0.013
Identities = 36/120 (30%), Positives = 43/120 (35%), Gaps = 22/120 (18%)
Query: 7 PYFVEVQAPELVTSMGREEGGLAGRLGRQCVSRQAAAGSRGPLLAGSLLAHLAEQRQWWL 66
P + AP+L + R R R CVSR + G R P A R W
Sbjct: 69 PLGADTSAPDLSRTSSR----CRRRRRRGCVSRLGSEGGRRP----------ARHRPTW- 113
Query: 67 VPPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPSELPEMGKGSRHP 126
P P Q P+ SL P PA PE R RG Q P E ++HP
Sbjct: 114 -PRRAEP---QVPEECSL---PAGVLPAQHGPEPRPRGLQPAAHQLPGERGRGSTAAQHP 166
>gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax
homolog 2 [Homo sapiens]
Length = 1210
Score = 34.3 bits (77), Expect = 0.029
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 57 HLAEQRQWWLVPPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPSEL 116
H E Q LV PAQPPS P S LP ++ ++P +R G+ Q PSE
Sbjct: 254 HDKETPQDSLVAPAQPPSQTFPPPS-----LPSKSVAMQQKPTAYVRPMD-GQDQAPSES 307
Query: 117 PEM 119
PE+
Sbjct: 308 PEL 310
>gi|169173182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 33.1 bits (74), Expect = 0.064
Identities = 37/115 (32%), Positives = 43/115 (37%), Gaps = 20/115 (17%)
Query: 32 LGRQCVSRQAAA-------GS--RGPLLAGS----LLAHLAEQRQWWLVPPAQPPSYRQS 78
LGR +R AA+ GS RG ++G L AH A+ L PA P +
Sbjct: 83 LGRPWATRSAASPHSKMWLGSHLRGGEMSGDPHTDLPAHPAQTTNPELELPADPAQPDPA 142
Query: 79 PKSMSLRNLPQRTSPAGRQPEGRMRGFPRGE-------QQRPSELPEMGKGSRHP 126
P S P SPA P G G PR Q P E P GS P
Sbjct: 143 PLSRPAPPRPAHQSPAEEGPRGAAGGGPRTPPAGRTQGQSGPRESPRASPGSAAP 197
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 32.3 bits (72), Expect = 0.11
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 17/98 (17%)
Query: 26 GGLAGRLGRQCVSRQAAAGSRGPLLAGSLLAHLAEQRQWWLVPPAQPPSYRQSPKSMSLR 85
GGL G ++ Q G +GP GS+L P R P S S +
Sbjct: 817 GGLLGHGPQEMRGPQEIRGMQGPPPQGSML--------------GPPQELRGPPGSQSQQ 862
Query: 86 NLPQRTSPAGRQPEGRMRGFPRGE-QQRPSELPEMGKG 122
PQ G P+G M+G P + QQ P+ P +G
Sbjct: 863 GPPQ--GSLGPPPQGGMQGPPGPQGQQNPARGPHPSQG 898
>gi|169167792 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 320
Score = 32.0 bits (71), Expect = 0.14
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 61 QRQWWLVPPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPSELPEMG 120
QR+W P PP RQ + M+ L A R P R G P S LPE+
Sbjct: 141 QRRWLRTTPHPPPPTRQGSREMAGAFL-----VAPRPPYSRSPGGPESAPTPASVLPELR 195
Query: 121 KGSR 124
+G +
Sbjct: 196 RGKQ 199
>gi|239752133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 32.0 bits (71), Expect = 0.14
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 55 LAHLAEQRQWWLVPPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPS 114
LAHL E+ + W P + P + R P G + R G + E QR
Sbjct: 122 LAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRREPPGNARQSRGVGAGKPEPQR-- 179
Query: 115 ELPEMGKGSRHPTGRKV 131
P + +R P R+V
Sbjct: 180 RPPRGSRAARRPRARRV 196
>gi|239749542 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 32.0 bits (71), Expect = 0.14
Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 29 AGRLGRQCV--SRQAAAGSRGPLLAGSLLAHLAEQRQWWLVPPAQPPSYRQSPKSMSLRN 86
+G++GR+ +R +AAG+RGP G A WL QPPS R SP R
Sbjct: 41 SGQVGRRLPIHARDSAAGARGP---GEPTGGRASA---WL--QLQPPSLRSSPLMHPARR 92
Query: 87 LPQRTSPAGRQPEGRMRGFPRG 108
R S R GR G P G
Sbjct: 93 AAGRGSTVSR---GRRAGTPGG 111
>gi|88987622 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 320
Score = 32.0 bits (71), Expect = 0.14
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 61 QRQWWLVPPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPSELPEMG 120
QR+W P PP RQ + M+ L A R P R G P S LPE+
Sbjct: 141 QRRWLRTTPHPPPPTRQGSREMAGAFL-----VAPRPPYSRSPGGPESAPTPASVLPELR 195
Query: 121 KGSR 124
+G +
Sbjct: 196 RGKQ 199
>gi|239746658 PREDICTED: hypothetical protein [Homo sapiens]
Length = 411
Score = 32.0 bits (71), Expect = 0.14
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 55 LAHLAEQRQWWLVPPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPS 114
LAHL E+ + W P + P + R P G + R G + E QR
Sbjct: 309 LAHLEERSEGWASTFLSAPGPQHPPTPPACSGAATRREPPGNARQSRGVGAGKPEPQR-- 366
Query: 115 ELPEMGKGSRHPTGRKV 131
P + +R P R+V
Sbjct: 367 RPPRGSRAARRPRARRV 383
>gi|239743694 PREDICTED: hypothetical protein XP_002342927 [Homo
sapiens]
Length = 136
Score = 32.0 bits (71), Expect = 0.14
Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 29 AGRLGRQCV--SRQAAAGSRGPLLAGSLLAHLAEQRQWWLVPPAQPPSYRQSPKSMSLRN 86
+G++GR+ +R +AAG+RGP G A WL QPPS R SP R
Sbjct: 41 SGQVGRRLPIHARDSAAGARGP---GEPTGGRASA---WL--QLQPPSLRSSPLMHPARR 92
Query: 87 LPQRTSPAGRQPEGRMRGFPRG 108
R S R GR G P G
Sbjct: 93 AAGRGSTVSR---GRRAGTPGG 111
>gi|51464815 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 319
Score = 32.0 bits (71), Expect = 0.14
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 61 QRQWWLVPPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPSELPEMG 120
QR+W P PP RQ + M+ L A R P R G P S LPE+
Sbjct: 140 QRRWLRTTPHPPPPTRQGSREMAGAFL-----VAPRPPYSRSPGGPESAPTPASVLPELR 194
Query: 121 KGSR 124
+G +
Sbjct: 195 RGKQ 198
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 32.0 bits (71), Expect = 0.14
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 66 LVPPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRGEQQ-RPSEL----PEMG 120
L P + PSYR +P S N Q +SP+ P P G RPS L P++G
Sbjct: 1116 LSPRSPTPSYRSTPDFPSGTNSSQSSSPSSSAPNS-----PAGSGHIRPSTLHGLAPKLG 1170
Query: 121 KGSRHPTGRK 130
G R+ +GR+
Sbjct: 1171 -GQRYRSGRR 1179
>gi|33598929 scavenger receptor class F, member 1 isoform 1
precursor [Homo sapiens]
Length = 830
Score = 31.6 bits (70), Expect = 0.19
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 74 SYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRG-EQQRPSELPEMGKGS 123
S QSP S LP T P +PE +RG G E R ++ P G GS
Sbjct: 749 SVGQSPNSAPKAGLPGATGPMAVRPEEAVRGLGAGTESSRRAQEPVSGCGS 799
>gi|145309306 scavenger receptor class F, member 1 isoform 5
precursor [Homo sapiens]
Length = 744
Score = 31.6 bits (70), Expect = 0.19
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 74 SYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRG-EQQRPSELPEMGKGS 123
S QSP S LP T P +PE +RG G E R ++ P G GS
Sbjct: 663 SVGQSPNSAPKAGLPGATGPMAVRPEEAVRGLGAGTESSRRAQEPVSGCGS 713
>gi|169214872 PREDICTED: hypothetical protein [Homo sapiens]
Length = 284
Score = 31.6 bits (70), Expect = 0.19
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 28 LAGRLGRQCVSRQAAAGSRGPLLAGSLLAHLAEQRQWWLVPPAQPPSYRQSPKSMSLRNL 87
LA RL R C A A AG+ L+H R P P S R +P++ R +
Sbjct: 30 LAVRLSRCCWCHHAGA-------AGTDLSHRQALRGLLQCPVQPPGSARAAPRTRGDRVI 82
Query: 88 PQRTSPAGRQPEGRMRGFPR 107
P+ TS G E R+ +P+
Sbjct: 83 PRATS--GCPAEARVTNYPQ 100
>gi|113429040 PREDICTED: hypothetical protein [Homo sapiens]
Length = 284
Score = 31.6 bits (70), Expect = 0.19
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 28 LAGRLGRQCVSRQAAAGSRGPLLAGSLLAHLAEQRQWWLVPPAQPPSYRQSPKSMSLRNL 87
LA RL R C A A AG+ L+H R P P S R +P++ R +
Sbjct: 30 LAVRLSRCCWCHHAGA-------AGTDLSHRQALRGLLQCPVQPPGSARAAPRTRGDRVI 82
Query: 88 PQRTSPAGRQPEGRMRGFPR 107
P+ TS G E R+ +P+
Sbjct: 83 PRATS--GCPAEARVTNYPQ 100
>gi|113428887 PREDICTED: hypothetical protein [Homo sapiens]
Length = 284
Score = 31.6 bits (70), Expect = 0.19
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 28 LAGRLGRQCVSRQAAAGSRGPLLAGSLLAHLAEQRQWWLVPPAQPPSYRQSPKSMSLRNL 87
LA RL R C A A AG+ L+H R P P S R +P++ R +
Sbjct: 30 LAVRLSRCCWCHHAGA-------AGTDLSHRQALRGLLQCPVQPPGSARAAPRTRGDRVI 82
Query: 88 PQRTSPAGRQPEGRMRGFPR 107
P+ TS G E R+ +P+
Sbjct: 83 PRATS--GCPAEARVTNYPQ 100
>gi|109389358 transcription factor AP-2 alpha isoform c [Homo
sapiens]
Length = 433
Score = 31.6 bits (70), Expect = 0.19
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 68 PPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPSELPEMGKGSRH 125
PP P Y QS S N P +P QP+ + G+P Q + S L +G H
Sbjct: 55 PPPYQPIYPQSQDPYSHVNDPYSLNPLHAQPQPQHPGWPGQRQSQESGLLHTHRGLPH 112
>gi|73760407 transcription factor AP-2 alpha isoform b [Homo
sapiens]
Length = 431
Score = 31.6 bits (70), Expect = 0.19
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 68 PPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPSELPEMGKGSRH 125
PP P Y QS S N P +P QP+ + G+P Q + S L +G H
Sbjct: 53 PPPYQPIYPQSQDPYSHVNDPYSLNPLHAQPQPQHPGWPGQRQSQESGLLHTHRGLPH 110
>gi|4507441 transcription factor AP-2 alpha isoform a [Homo sapiens]
Length = 437
Score = 31.6 bits (70), Expect = 0.19
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 68 PPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPSELPEMGKGSRH 125
PP P Y QS S N P +P QP+ + G+P Q + S L +G H
Sbjct: 59 PPPYQPIYPQSQDPYSHVNDPYSLNPLHAQPQPQHPGWPGQRQSQESGLLHTHRGLPH 116
>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
Length = 579
Score = 31.2 bits (69), Expect = 0.24
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 68 PPAQPPSYRQSPKSM-SLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPSELPEMGKGS 123
PP P QSP+ S QR SP G+QP G P +QQR P++ + S
Sbjct: 436 PPQGGPRQAQSPQPQRSGSPSQQRLSPQGQQPLSPQSGSP--QQQRSPGSPQLSRAS 490
>gi|209413752 synapsin III isoform IIIa [Homo sapiens]
Length = 580
Score = 31.2 bits (69), Expect = 0.24
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 68 PPAQPPSYRQSPKSM-SLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPSELPEMGKGS 123
PP P QSP+ S QR SP G+QP G P +QQR P++ + S
Sbjct: 437 PPQGGPRQAQSPQPQRSGSPSQQRLSPQGQQPLSPQSGSP--QQQRSPGSPQLSRAS 491
>gi|23308585 G protein-coupled receptor 156 [Homo sapiens]
Length = 814
Score = 30.8 bits (68), Expect = 0.32
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 39 RQAAAGSRG--PLLAGSLLAHLAEQRQWWLVPPAQPPSYRQSPKSMSLRNLPQRTSPAGR 96
R+AA +R P A S + H A + VP A + Q+ S SL PQ T R
Sbjct: 602 RRAAQRARSHFPGSAPSSVGHRANRT----VPGAHSRLHVQNGDSPSLA--PQTTDSRVR 655
Query: 97 QPEGRMRGFPRGEQQRPSELPEMGKGSRHPTGRK 130
+P R P Q RP L + P G +
Sbjct: 656 RPSSRKPSLPSDPQDRPGTLEGSKQSQTEPEGAR 689
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 30.4 bits (67), Expect = 0.41
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 68 PPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRG--FPRGEQQRPSELPEMGKGS 123
P A PPS + P + S + P + P+G FP+G P+ P KGS
Sbjct: 989 PAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGS 1046
Score = 29.3 bits (64), Expect = 0.92
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 63 QWWLVPPAQ-PPSYRQSPKSMSLRNLPQRTSPAGRQPE---GRMRGFPRGEQQRPSELPE 118
+W PPA PPS + P + S + P T PA P G P+G P+ P
Sbjct: 960 KWAPTPPAATPPSPKGGPATPSPKGAP--TPPAATPPSPKGGPATPSPKGAPTPPAVTPP 1017
Query: 119 MGKGS 123
KGS
Sbjct: 1018 SPKGS 1022
Score = 26.6 bits (57), Expect = 6.0
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 68 PPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFP-RGEQQRPSELPEMGKG 122
P A PPS + P + S + P + P+G + P +G P+ P KG
Sbjct: 1083 PAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKG 1138
>gi|62912482 high mobility group AT-hook 2 isoform b [Homo sapiens]
Length = 106
Score = 30.0 bits (66), Expect = 0.54
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 93 PAGRQPEGRMRGFPRGEQQRPSELPEMGKGSRHPTGRK 130
PA P+ R RG PR +QQ P+ P + P G K
Sbjct: 19 PAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSK 56
>gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens]
Length = 109
Score = 30.0 bits (66), Expect = 0.54
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 93 PAGRQPEGRMRGFPRGEQQRPSELPEMGKGSRHPTGRK 130
PA P+ R RG PR +QQ P+ P + P G K
Sbjct: 19 PAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSK 56
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 30.0 bits (66), Expect = 0.54
Identities = 29/123 (23%), Positives = 41/123 (33%), Gaps = 5/123 (4%)
Query: 5 GQPYFVEVQAPELVTSMGREEGGLAGRLGRQCVSRQAAAGSRGPLLAGSLLAHLAEQRQW 64
GQPY + +T GR + + G Q + G G G + +
Sbjct: 419 GQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPH- 477
Query: 65 WLVPPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPSELPEMGKGSR 124
P Q P Y Q P S + P QP P QQ PS+ P +
Sbjct: 478 ---PQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQ-PSQPPHQQSPAP 533
Query: 125 HPT 127
+P+
Sbjct: 534 YPS 536
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 30.0 bits (66), Expect = 0.54
Identities = 29/123 (23%), Positives = 41/123 (33%), Gaps = 5/123 (4%)
Query: 5 GQPYFVEVQAPELVTSMGREEGGLAGRLGRQCVSRQAAAGSRGPLLAGSLLAHLAEQRQW 64
GQPY + +T GR + + G Q + G G G + +
Sbjct: 419 GQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPH- 477
Query: 65 WLVPPAQPPSYRQSPKSMSLRNLPQRTSPAGRQPEGRMRGFPRGEQQRPSELPEMGKGSR 124
P Q P Y Q P S + P QP P QQ PS+ P +
Sbjct: 478 ---PQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQ-PSQPPHQQSPAP 533
Query: 125 HPT 127
+P+
Sbjct: 534 YPS 536
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,387,384
Number of Sequences: 37866
Number of extensions: 348078
Number of successful extensions: 1573
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 1452
Number of HSP's gapped (non-prelim): 238
length of query: 131
length of database: 18,247,518
effective HSP length: 91
effective length of query: 40
effective length of database: 14,801,712
effective search space: 592068480
effective search space used: 592068480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.