Guide to the Human Genome
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Name: TFAP2A Sequence: fasta or formatted (433aa) NCBI GI: 109389358
Description:

transcription factor AP-2 alpha isoform c

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [437aa] transcription factor AP-2 alpha isoform a
alt prot [431aa] transcription factor AP-2 alpha isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         29           2
 C cysteine            1.4          6           1
 D aspartate           4.8         21           1
 E glutamate           4.6         20           2
 F phenylalanine       2.3         10           1
 G glycine             6.9         30           2
 H histidine           4.6         20           1
 I isoleucine          3.2         14           1
 K lysine              5.1         22           2
 L leucine            11.1         48           2
 M methionine          1.2          5           1
 N asparagine          6.2         27           2
 P proline             9.5         41           3
 Q glutamine           5.1         22           1
 R arginine            5.3         23           2
 S serine              9.2         40           2
 T threonine           4.4         19           1
 V valine              5.3         23           2
 W tryptophan          0.5          2           1
 Y tyrosine            2.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor AP-2 alpha isoform c 
TFAP2A                0.977   transcription factor AP-2 alpha isoform a 
TFAP2A                0.973   transcription factor AP-2 alpha isoform b 
TFAP2B                0.657   transcription factor AP-2 beta 
TFAP2C                0.558   transcription factor AP-2 gamma 
TFAP2E                0.527   transcription factor AP-2 epsilon (activating enhan...
TFAP2D                0.379   transcription factor AP-2 beta-like 1 
SEC16A                0.017   SEC16 homolog A 
NIPBL                 0.016   delangin isoform B 
NIPBL                 0.016   delangin isoform A 
VPS37C                0.016   vacuolar protein sorting 37C 
SSBP3                 0.016   single stranded DNA binding protein 3 isoform b [Hom...
ARID1A                0.015   AT rich interactive domain 1A isoform a 
ARID1A                0.015   AT rich interactive domain 1A isoform b 
MLL2                  0.015   myeloid/lymphoid or mixed-lineage leukemia 2 
GRINA                 0.014   glutamate receptor, ionotropic, N-methyl D-aspartate...
GRINA                 0.014   glutamate receptor, ionotropic, N-methyl D-aspartate...
RERE                  0.014   atrophin-1 like protein isoform b 
RERE                  0.014   atrophin-1 like protein isoform a 
RERE                  0.014   atrophin-1 like protein isoform a 
CHERP                 0.014   calcium homeostasis endoplasmic reticulum protein [...
R3HDM2                0.014   R3H domain containing 2 
BRD4                  0.013   bromodomain-containing protein 4 isoform long 
RBM33                 0.013   RNA binding motif protein 33 
RFX1                  0.012   regulatory factor X1 
LOC100287742          0.012   PREDICTED: hypothetical protein XP_002343595 
LOC100129365          0.012   PREDICTED: hypothetical protein 
LOC100292058          0.012   PREDICTED: hypothetical protein XP_002344766 
LOC100290367          0.012   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.012   PREDICTED: hypothetical protein XP_002343287 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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