Guide to the Human Genome
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Name: LOC100288294 Sequence: fasta or formatted (136aa) NCBI GI: 239749542
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {136aa} PREDICTED: hypothetical protein XP_002342927
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         11           2
 C cysteine            0.0          0           0
 D aspartate           1.5          2           1
 E glutamate           2.2          3           1
 F phenylalanine       2.2          3           1
 G glycine            16.2         22           2
 H histidine           1.5          2           1
 I isoleucine          2.9          4           2
 K lysine              2.9          4           2
 L leucine             5.9          8           1
 M methionine          2.2          3           1
 N asparagine          0.0          0           0
 P proline            11.8         16           2
 Q glutamine           3.7          5           1
 R arginine           13.2         18           2
 S serine             13.2         18           2
 T threonine           5.1          7           1
 V valine              4.4          6           2
 W tryptophan          1.5          2           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288294          1.000   PREDICTED: hypothetical protein XP_002342927 
LOC100293695          0.984   PREDICTED: hypothetical protein 
LOC100292058          0.063   PREDICTED: hypothetical protein XP_002344766 
LOC100290367          0.063   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.063   PREDICTED: hypothetical protein XP_002343287 
RBM33                 0.051   RNA binding motif protein 33 
COL1A1                0.047   alpha 1 type I collagen preproprotein 
CSF1                  0.039   colony stimulating factor 1 isoform a precursor [Hom...
CSF1                  0.039   colony stimulating factor 1 isoform a precursor [Hom...
LOC100290430          0.039   PREDICTED: hypothetical protein XP_002346632 
DUSP8                 0.039   dual specificity phosphatase 8 
CELSR2                0.039   cadherin EGF LAG seven-pass G-type receptor 2 
LOC100131320          0.035   PREDICTED: hypothetical protein isoform 1 
LOC730198             0.035   PREDICTED: hypothetical protein 
LOC730198             0.035   PREDICTED: hypothetical protein 
LOC730198             0.035   PREDICTED: hypothetical protein 
LOC100290372          0.031   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.031   PREDICTED: hypothetical protein XP_002342652 
HNRNPR                0.031   heterogeneous nuclear ribonucleoprotein R isoform 3...
HNRNPR                0.031   heterogeneous nuclear ribonucleoprotein R isoform 1...
HNRNPR                0.031   heterogeneous nuclear ribonucleoprotein R isoform 4...
HNRNPR                0.031   heterogeneous nuclear ribonucleoprotein R isoform 2 [...
SRRM1                 0.031   serine/arginine repetitive matrix 1 
USP21                 0.031   ubiquitin-specific protease 21 
USP21                 0.031   ubiquitin-specific protease 21 
LOC100293377          0.028   PREDICTED: hypothetical protein 
C6orf186              0.028   chromosome 6 open reading frame 186 
LOC100291743          0.028   PREDICTED: hypothetical protein XP_002344931 
LOC100293014          0.028   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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