Guide to the Human Genome
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Name: LOC100292114 Sequence: fasta or formatted (376aa) NCBI GI: 239753216
Description:

PREDICTED: similar to immunoglobulin superfamily, member 3

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         19           2
 C cysteine            1.6          6           1
 D aspartate           4.0         15           1
 E glutamate           9.8         37           1
 F phenylalanine       4.3         16           1
 G glycine             6.4         24           1
 H histidine           1.9          7           1
 I isoleucine          5.3         20           2
 K lysine              3.7         14           1
 L leucine             6.9         26           1
 M methionine          2.1          8           1
 N asparagine          3.5         13           1
 P proline             4.8         18           1
 Q glutamine           4.8         18           1
 R arginine            8.0         30           2
 S serine              9.3         35           2
 T threonine           4.0         15           2
 V valine              9.6         36           2
 W tryptophan          2.7         10           1
 Y tyrosine            2.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to immunoglobulin superfamily, m... 
IGSF3                 0.896   immunoglobulin superfamily, member 3 isoform 2 [Homo...
IGSF3                 0.882   immunoglobulin superfamily, member 3 isoform 1 [Homo...
IGSF2                 0.229   immunoglobulin superfamily, member 2 
IGSF8                 0.134   immunoglobulin superfamily, member 8 
PTGFRN                0.092   prostaglandin F2 receptor negative regulator 
HSPG2                 0.023   heparan sulfate proteoglycan 2 
PIGR                  0.022   polymeric immunoglobulin receptor precursor 
NCAM2                 0.019   neural cell adhesion molecule 2 precursor 
HMCN2                 0.019   PREDICTED: hemicentin 2 
FGFRL1                0.019   fibroblast growth factor receptor-like 1 precursor [...
FGFRL1                0.019   fibroblast growth factor receptor-like 1 precursor [...
FGFRL1                0.019   fibroblast growth factor receptor-like 1 precursor [...
SIGLEC1               0.015   sialoadhesin precursor 
IL1RL1                0.014   interleukin 1 receptor-like 1 isoform 2 precursor [H...
IL1RL1                0.014   interleukin 1 receptor-like 1 isoform 1 precursor [H...
HMCN1                 0.014   hemicentin 1 
LSAMP                 0.014   limbic system-associated membrane protein 
LOC100292423          0.012   PREDICTED: hypothetical protein 
NPTN                  0.012   neuroplastin isoform c precursor 
NPTN                  0.012   neuroplastin isoform b precursor 
LOC100132705          0.012   PREDICTED: similar to immunoglobulin superfamily, m...
LOC100132900          0.012   PREDICTED: similar to KIAA0466 protein 
ROBO3                 0.012   roundabout, axon guidance receptor, homolog 3 
SIGLEC7               0.012   sialic acid binding Ig-like lectin 7 isoform 2 [Hom...
VSTM2L                0.012   V-set and transmembrane domain containing 2 like [Ho...
FGFR3                 0.011   fibroblast growth factor receptor 3 isoform 3 precu...
FGFR3                 0.011   fibroblast growth factor receptor 3 isoform 1 precurs...
CNTN6                 0.011   contactin 6 
MDGA1                 0.011   MAM domain containing glycosylphosphatidylinositol a...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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