Guide to the Human Genome
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Name: LOC100132705 Sequence: fasta or formatted (195aa) NCBI GI: 169215606
Description:

PREDICTED: similar to immunoglobulin superfamily, member 3

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1          6           1
 C cysteine            1.5          3           1
 D aspartate           4.6          9           2
 E glutamate           7.2         14           1
 F phenylalanine       5.1         10           1
 G glycine             8.2         16           2
 H histidine           4.1          8           2
 I isoleucine          5.1         10           1
 K lysine              4.1          8           2
 L leucine             7.2         14           2
 M methionine          1.0          2           1
 N asparagine          2.6          5           2
 P proline             5.6         11           2
 Q glutamine           7.2         14           1
 R arginine            6.2         12           1
 S serine              8.2         16           2
 T threonine           6.2         12           1
 V valine              7.7         15           2
 W tryptophan          1.5          3           1
 Y tyrosine            3.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to immunoglobulin superfamily, m... 
LOC100132900          0.766   PREDICTED: similar to KIAA0466 protein 
IGSF3                 0.564   immunoglobulin superfamily, member 3 isoform 1 [Homo...
IGSF3                 0.564   immunoglobulin superfamily, member 3 isoform 2 [Homo...
IGSF2                 0.388   immunoglobulin superfamily, member 2 
IGSF8                 0.286   immunoglobulin superfamily, member 8 
PTGFRN                0.163   prostaglandin F2 receptor negative regulator 
LOC100290415          0.034   PREDICTED: hypothetical protein XP_002347493 
LOC100292114          0.024   PREDICTED: similar to immunoglobulin superfamily, m...
LOC100130811          0.021   PREDICTED: similar to hCG2038921 
LOC100130811          0.021   PREDICTED: similar to hCG2038921 
HMCN1                 0.018   hemicentin 1 
NCAM1                 0.018   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.018   neural cell adhesion molecule 1 isoform 2 
NCAM1                 0.018   neural cell adhesion molecule 1 isoform 3 
TTN                   0.016   titin isoform N2-A 
NPTN                  0.016   neuroplastin isoform d precursor 
NPTN                  0.016   neuroplastin isoform c precursor 
NPTN                  0.016   neuroplastin isoform a precursor 
NPTN                  0.016   neuroplastin isoform b precursor 
SCN4B                 0.016   sodium channel, voltage-gated, type IV, beta isoform...
VSIG1                 0.016   V-set and immunoglobulin domain containing 1 
OBSL1                 0.013   obscurin-like 1 
CH25H                 0.013   cholesterol 25-hydroxylase 
CNTN1                 0.013   contactin 1 isoform 1 precursor 
CNTN1                 0.013   contactin 1 isoform 2 precursor 
CD274                 0.010   CD274 molecule 
TTN                   0.010   titin isoform novex-2 
TTN                   0.010   titin isoform novex-1 
TTN                   0.010   titin isoform N2-B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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