Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: IGSF2 Sequence: fasta or formatted (1021aa) NCBI GI: 157694489
Description:

immunoglobulin superfamily, member 2

Referenced in:

Additional Genes in Development
T cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         54           2
 C cysteine            1.8         18           1
 D aspartate           4.0         41           1
 E glutamate           7.1         72           3
 F phenylalanine       3.3         34           2
 G glycine             6.1         62           3
 H histidine           2.8         29           1
 I isoleucine          4.3         44           2
 K lysine              5.6         57           2
 L leucine            10.5        107           6
 M methionine          1.5         15           1
 N asparagine          3.3         34           2
 P proline             3.8         39           2
 Q glutamine           6.1         62           2
 R arginine            4.8         49           2
 S serine              9.8        100           3
 T threonine           7.1         73           2
 V valine              7.3         75           2
 W tryptophan          2.4         25           2
 Y tyrosine            3.0         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   immunoglobulin superfamily, member 2 
IGSF3                 0.296   immunoglobulin superfamily, member 3 isoform 2 [Homo...
IGSF3                 0.292   immunoglobulin superfamily, member 3 isoform 1 [Homo...
IGSF8                 0.125   immunoglobulin superfamily, member 8 
PTGFRN                0.099   prostaglandin F2 receptor negative regulator 
LOC100292114          0.083   PREDICTED: similar to immunoglobulin superfamily, m...
LOC100132705          0.073   PREDICTED: similar to immunoglobulin superfamily, m...
LOC100132900          0.073   PREDICTED: similar to KIAA0466 protein 
HSPG2                 0.015   heparan sulfate proteoglycan 2 
MDGA1                 0.014   MAM domain containing glycosylphosphatidylinositol a...
FGFR2                 0.011   fibroblast growth factor receptor 2 isoform 9 precu...
FGFR2                 0.011   fibroblast growth factor receptor 2 isoform 3 precu...
FGFR2                 0.011   fibroblast growth factor receptor 2 isoform 2 precu...
NCAM2                 0.011   neural cell adhesion molecule 2 precursor 
C10orf72              0.011   hypothetical protein LOC196740 isoform 1 
TTN                   0.010   titin isoform N2-A 
OBSL1                 0.010   obscurin-like 1 
F11R                  0.010   F11 receptor precursor 
CADM1                 0.010   immunoglobulin superfamily, member 4D isoform 2 [Ho...
CADM1                 0.010   immunoglobulin superfamily, member 4D isoform 1 [Ho...
HMCN1                 0.009   hemicentin 1 
FCRL2                 0.009   Fc receptor-like 2 precursor 
PXDN                  0.008   peroxidasin 
C10orf72              0.008   hypothetical protein LOC196740 isoform 2 
CNTN6                 0.007   contactin 6 
PVRL4                 0.007   poliovirus receptor-related 4 
OBSCN                 0.007   obscurin, cytoskeletal calmodulin and titin-interact...
OBSCN                 0.007   obscurin, cytoskeletal calmodulin and titin-interac...
MXRA5                 0.007   adlican 
CDON                  0.007   surface glycoprotein, Ig superfamily member 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press