Guide to the Human Genome
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Name: VSTM2L Sequence: fasta or formatted (204aa) NCBI GI: 18079321
Description:

V-set and transmembrane domain containing 2 like

Referenced in:

Additional Immunoglobulin-related Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         23           2
 C cysteine            1.5          3           1
 D aspartate           4.9         10           1
 E glutamate           5.9         12           1
 F phenylalanine       2.0          4           1
 G glycine             7.4         15           2
 H histidine           4.9         10           2
 I isoleucine          2.0          4           1
 K lysine              6.4         13           1
 L leucine             8.3         17           1
 M methionine          1.5          3           1
 N asparagine          2.0          4           1
 P proline             7.8         16           4
 Q glutamine           3.9          8           2
 R arginine            5.9         12           1
 S serine              8.3         17           1
 T threonine           4.4          9           1
 V valine              6.9         14           2
 W tryptophan          2.5          5           2
 Y tyrosine            2.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   V-set and transmembrane domain containing 2 like [Ho... 
VSTM2B                0.250   V-set and transmembrane domain containing 2B 
VSTM2B                0.250   PREDICTED: V-set and transmembrane domain containin...
VSTM2B                0.250   PREDICTED: V-set and transmembrane domain containin...
VSTM2B                0.250   PREDICTED: V-set and transmembrane domain containin...
VSTM2A                0.235   V-set and transmembrane domain containing 2 
NPTN                  0.085   neuroplastin isoform c precursor 
NPTN                  0.085   neuroplastin isoform b precursor 
BSG                   0.045   basigin isoform 1 precursor 
PDCD1                 0.033   programmed cell death 1 precursor 
VTCN1                 0.030   V-set domain containing T cell activation inhibitor ...
IGSF2                 0.030   immunoglobulin superfamily, member 2 
C10orf134             0.028   PREDICTED: chromosome 10 open reading frame 134 [Ho...
C10orf134             0.028   PREDICTED: chromosome 10 open reading frame 134 [Ho...
C10orf134             0.028   PREDICTED: chromosome 10 open reading frame 134 [Ho...
KIRREL3               0.025   kin of IRRE like 3 isoform 2 
KIRREL3               0.025   kin of IRRE like 3 isoform 1 
HSPG2                 0.025   heparan sulfate proteoglycan 2 
CD276                 0.025   CD276 antigen isoform a 
CD276                 0.025   CD276 antigen isoform b 
IGSF3                 0.025   immunoglobulin superfamily, member 3 isoform 1 [Homo...
IGSF3                 0.025   immunoglobulin superfamily, member 3 isoform 2 [Homo...
CD8A                  0.022   CD8 antigen alpha polypeptide isoform 1 precursor [H...
CD8A                  0.022   CD8 antigen alpha polypeptide isoform 2 precursor [H...
CD8A                  0.022   CD8 antigen alpha polypeptide isoform 1 precursor [...
IGSF8                 0.022   immunoglobulin superfamily, member 8 
LOC100292114          0.022   PREDICTED: similar to immunoglobulin superfamily, m...
SIRPB1                0.022   signal-regulatory protein beta 1 isoform 3 precurso...
DAZAP2                0.020   DAZ associated protein 2 isoform e 
KIAA1598              0.020   shootin1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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