Guide to the Human Genome
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Name: PIGR Sequence: fasta or formatted (764aa) NCBI GI: 31377806
Description:

polymeric immunoglobulin receptor precursor

Referenced in:

Fc Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         58           2
 C cysteine            2.7         21           1
 D aspartate           5.0         38           2
 E glutamate           7.1         54           2
 F phenylalanine       3.3         25           1
 G glycine             8.8         67           2
 H histidine           0.8          6           1
 I isoleucine          3.5         27           2
 K lysine              5.5         42           2
 L leucine             8.6         66           2
 M methionine          0.5          4           1
 N asparagine          5.1         39           2
 P proline             4.2         32           2
 Q glutamine           4.1         31           1
 R arginine            5.4         41           1
 S serine              8.9         68           2
 T threonine           5.8         44           2
 V valine              8.5         65           3
 W tryptophan          1.4         11           1
 Y tyrosine            3.3         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   polymeric immunoglobulin receptor precursor 
FCAMR                 0.051   Fc receptor, IgA, IgM, high affinity isoform 2 [Hom...
FCAMR                 0.049   Fc receptor, IgA, IgM, high affinity isoform 1 [Hom...
FCAMR                 0.049   Fc receptor, IgA, IgM, high affinity isoform 1 [Hom...
CD300C                0.032   CD300C antigen 
FAIM3                 0.031   Fas apoptotic inhibitory molecule 3 isoform a [Homo...
FAIM3                 0.031   Fas apoptotic inhibitory molecule 3 isoform a 
CD300A                0.030   leukocyte membrane antigen 
CD300E                0.025   CD300e molecule 
NCR2                  0.024   natural cytotoxicity triggering receptor 2 
CD300LG               0.022   CD300 molecule-like family member g 
CD300LF               0.021   NK inhibitory receptor precursor 
LOC100130520          0.020   PREDICTED: similar to CD300C antigen 
LOC100130520          0.020   PREDICTED: similar to CD300C antigen 
LOC100130520          0.020   PREDICTED: similar to CD300C antigen 
CD300LD               0.020   CD300 molecule-like family member d 
IGSF10                0.020   immunoglobulin superfamily, member 10 
TREM2                 0.019   triggering receptor expressed on myeloid cells 2 prec...
CD300LB               0.019   CD300 molecule-like family member b 
TREML4                0.018   triggering receptor expressed on myeloid cells-like ...
OBSCN                 0.018   obscurin, cytoskeletal calmodulin and titin-interact...
OBSCN                 0.018   obscurin, cytoskeletal calmodulin and titin-interac...
IGSF3                 0.017   immunoglobulin superfamily, member 3 isoform 2 [Homo...
HMCN1                 0.016   hemicentin 1 
CNTN5                 0.015   contactin 5 isoform long 
CNTN5                 0.015   contactin 5 isoform short 
HMCN2                 0.015   PREDICTED: hemicentin 2 
HMCN2                 0.015   PREDICTED: hemicentin 2 
HMCN2                 0.015   PREDICTED: hemicentin 2 
DSCAM                 0.014   Down syndrome cell adhesion molecule isoform CHD2-42...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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