Guide to the Human Genome
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Name: IGSF3 Sequence: fasta or formatted (1194aa) NCBI GI: 55953135
Description:

immunoglobulin superfamily, member 3 isoform 2

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [1214aa] immunoglobulin superfamily, member 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         67           2
 C cysteine            1.7         20           1
 D aspartate           4.4         52           7
 E glutamate           8.2         98           6
 F phenylalanine       3.9         46           2
 G glycine             5.5         66           2
 H histidine           2.2         26           1
 I isoleucine          4.3         51           2
 K lysine              3.9         46           1
 L leucine             8.2         98           2
 M methionine          1.1         13           1
 N asparagine          3.4         40           2
 P proline             5.2         62           2
 Q glutamine           5.4         64           1
 R arginine            6.9         82           2
 S serine             10.1        120           3
 T threonine           6.3         75           2
 V valine              8.5        102           2
 W tryptophan          2.3         28           1
 Y tyrosine            3.2         38           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   immunoglobulin superfamily, member 3 isoform 2 [Homo... 
IGSF3                 0.995   immunoglobulin superfamily, member 3 isoform 1 [Homo...
LOC100292114          0.276   PREDICTED: similar to immunoglobulin superfamily, m...
IGSF2                 0.253   immunoglobulin superfamily, member 2 
IGSF8                 0.110   immunoglobulin superfamily, member 8 
PTGFRN                0.095   prostaglandin F2 receptor negative regulator 
LOC100132705          0.090   PREDICTED: similar to immunoglobulin superfamily, m...
LOC100132900          0.090   PREDICTED: similar to KIAA0466 protein 
HSPG2                 0.018   heparan sulfate proteoglycan 2 
PIGR                  0.010   polymeric immunoglobulin receptor precursor 
C10orf72              0.009   hypothetical protein LOC196740 isoform 2 
C10orf72              0.009   hypothetical protein LOC196740 isoform 1 
CSRNP3                0.008   cysteine-serine-rich nuclear protein 3 
LOC100290415          0.008   PREDICTED: hypothetical protein XP_002347493 
NCAM2                 0.008   neural cell adhesion molecule 2 precursor 
TTN                   0.008   titin isoform N2-A 
MXRA8                 0.007   matrix-remodelling associated 8 
ZNF526                0.007   zinc finger protein 526 
TTBK1                 0.007   tau tubulin kinase 1 
SETD1B                0.007   SET domain containing 1B 
FGFR2                 0.006   fibroblast growth factor receptor 2 isoform 3 precu...
FGFR2                 0.006   fibroblast growth factor receptor 2 isoform 2 precu...
FGFRL1                0.006   fibroblast growth factor receptor-like 1 precursor [...
FGFRL1                0.006   fibroblast growth factor receptor-like 1 precursor [...
FGFRL1                0.006   fibroblast growth factor receptor-like 1 precursor [...
VPRBP                 0.006   HIV-1 Vpr binding protein 
CENPB                 0.006   centromere protein B 
HOMEZ                 0.006   homeodomain leucine zipper protein 
PRDM2                 0.006   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.006   retinoblastoma protein-binding zinc finger protein i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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