Search of human proteins with 239753154

Search of human proteins with 239753154

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753154 PREDICTED: hypothetical protein [Homo sapiens]
         (79 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753154 PREDICTED: hypothetical protein [Homo sapiens]           151   9e-38
gi|239747723 PREDICTED: hypothetical protein XP_002348235 [Homo ...   151   9e-38
gi|239741589 PREDICTED: hypothetical protein XP_002342258 [Homo ...   151   9e-38
gi|19923050 death effector domain-containing  DNA binding protei...    35   0.010
gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]            32   0.084
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]            31   0.24 
gi|239757909 PREDICTED: hypothetical protein [Homo sapiens]            30   0.32 
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ...    30   0.42 
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]            30   0.54 
gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]            30   0.54 
gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo ...    30   0.54 
gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo ...    30   0.54 
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s...    30   0.54 
gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo s...    30   0.54 
gi|50726960 phosphatidylinositol (4,5) bisphosphate 5-phosphatas...    30   0.54 
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ...    29   0.71 
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ...    29   0.71 
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ...    29   0.71 
gi|239752421 PREDICTED: hypothetical protein [Homo sapiens]            29   0.71 
gi|239746936 PREDICTED: hypothetical protein [Homo sapiens]            29   0.71 
gi|154146199 sal-like 3 [Homo sapiens]                                 29   0.71 
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ...    29   0.93 
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ...    29   0.93 
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ...    29   0.93 
gi|239757467 PREDICTED: hypothetical protein [Homo sapiens]            29   0.93 
gi|239751993 PREDICTED: hypothetical protein [Homo sapiens]            29   0.93 
gi|239746476 PREDICTED: hypothetical protein [Homo sapiens]            29   0.93 
gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]             29   0.93 
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]                29   0.93 
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        29   0.93 

>gi|239753154 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 79

 Score =  151 bits (382), Expect = 9e-38
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL 60
          MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL
Sbjct: 1  MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL 60

Query: 61 RSIQLSTCLMRMEMTLKSE 79
          RSIQLSTCLMRMEMTLKSE
Sbjct: 61 RSIQLSTCLMRMEMTLKSE 79


>gi|239747723 PREDICTED: hypothetical protein XP_002348235 [Homo
          sapiens]
          Length = 79

 Score =  151 bits (382), Expect = 9e-38
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL 60
          MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL
Sbjct: 1  MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL 60

Query: 61 RSIQLSTCLMRMEMTLKSE 79
          RSIQLSTCLMRMEMTLKSE
Sbjct: 61 RSIQLSTCLMRMEMTLKSE 79


>gi|239741589 PREDICTED: hypothetical protein XP_002342258 [Homo
          sapiens]
          Length = 79

 Score =  151 bits (382), Expect = 9e-38
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL 60
          MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL
Sbjct: 1  MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL 60

Query: 61 RSIQLSTCLMRMEMTLKSE 79
          RSIQLSTCLMRMEMTLKSE
Sbjct: 61 RSIQLSTCLMRMEMTLKSE 79


>gi|19923050 death effector domain-containing  DNA binding protein 2
           [Homo sapiens]
          Length = 326

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 5   SPERRRPSASLSRA------AGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQL 58
           S  RRR S+S + +       GS P+  +RR    P   A RR RGAP A QQ+++  + 
Sbjct: 129 SCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQQQSEPARP 188

Query: 59  SLRSIQLSTCLMRMEM 74
           S  S    TC +R+ +
Sbjct: 189 S--SEGKVTCDIRLRV 202


>gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 303

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 6   PERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQ 50
           P   RPS +  R  G  PS  R + SR P   ALRR+   P AG+
Sbjct: 116 PRPLRPSRAAPRLRGEEPSLLRPQLSRRP--RALRRSTRVPAAGK 158


>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 380

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 5   SPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQ 54
           +P  RR    L R A   P  A RRRS  P     R   G PG G+ R Q
Sbjct: 183 APGARRSRPRLLRPASPPPRPAPRRRSTAP-----RHEGGRPGRGRTRRQ 227


>gi|239757909 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 127

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 13  ASLSRAAGSAP--SAARRRRSREPGVMALRRARGAPGAGQQRAQQR 56
           A LSR  G +P  S A+ RR +EPG + L + +   G GQ+R   R
Sbjct: 62  AELSREGGGSPLQSEAQGRR-QEPGALFLEQRQALRGRGQERRGHR 106


>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
           subunit [Homo sapiens]
          Length = 2339

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 7   ERRRPSASLSRAAGSAPSAARRRRSREPGVMALRR--ARGAPGAGQQRAQQRQLSLR 61
           ER RP  S S+ A + P  AR  R R PG    RR   RG+P    +R  +R  + R
Sbjct: 884 ERPRPHRSHSKEA-AGPPEARSERGRGPGPEGGRRHHRRGSPEEAAEREPRRHRAHR 939


>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 292

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 17/64 (26%), Positives = 26/64 (40%)

Query: 7   ERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSLRSIQLS 66
           E RR +       G+ PSA  R    +P +      RG PG GQ  A  +    R  + +
Sbjct: 198 EARRSALQQLHGGGNRPSAPSRVAVEDPWLEVSSSGRGGPGRGQGLAGSQARGTRDPEAA 257

Query: 67  TCLM 70
             ++
Sbjct: 258 QAML 261


>gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 219

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 6   PERRRPSA--SLSRAAGSAPSAARRRRSREPGVMALR 40
           P R+RP A  + +RA+ + P A+RR R R  G+ A R
Sbjct: 143 PPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAAR 179


>gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo
           sapiens]
          Length = 219

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 6   PERRRPSA--SLSRAAGSAPSAARRRRSREPGVMALR 40
           P R+RP A  + +RA+ + P A+RR R R  G+ A R
Sbjct: 143 PPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAAR 179


>gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo
           sapiens]
          Length = 219

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 6   PERRRPSA--SLSRAAGSAPSAARRRRSREPGVMALR 40
           P R+RP A  + +RA+ + P A+RR R R  G+ A R
Sbjct: 143 PPRQRPGAGTAAARASRAGPRASRRGRGRGRGLQAAR 179


>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
            sapiens]
          Length = 1151

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 2    EMSSPERRRPSASLSRA-AGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLS 59
            ++++PE  RP   L  A  GS      R R    G  A R+A    G+ Q +AQQR+++
Sbjct: 1027 DLNTPEESRPGKPLGSAFPGSEAEQTERHRG---GEQAGRKAARRGGSQQPQAQQRRVT 1082


>gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo
            sapiens]
          Length = 1292

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 2    EMSSPERRRPSASLSRA-AGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLS 59
            ++++PE  RP   L  A  GS      R R    G  A R+A    G+ Q +AQQR+++
Sbjct: 1168 DLNTPEESRPGKPLGSAFPGSEAEQTERHRG---GEQAGRKAARRGGSQQPQAQQRRVT 1223


>gi|50726960 phosphatidylinositol (4,5) bisphosphate 5-phosphatase,
           A [Homo sapiens]
          Length = 638

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 1   MEMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSL 60
           +E+ +P+ R PS          P  ++R RSR PG+         P + ++R   R  S 
Sbjct: 498 LELLAPKSRSPS----------PGKSKRHRSRSPGLARFPGLALRPSSRERRGASRSPSP 547

Query: 61  RSIQLS 66
           +S +LS
Sbjct: 548 QSRRLS 553


>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 6 [Homo sapiens]
          Length = 562

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 13  ASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQ 57
           A+ SR  G+AP   R   S+  G  + R  RGA G  QQ+  + Q
Sbjct: 506 AAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQ 550


>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 3 [Homo sapiens]
          Length = 527

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 13  ASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQ 57
           A+ SR  G+AP   R   S+  G  + R  RGA G  QQ+  + Q
Sbjct: 471 AAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQ 515


>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 2 [Homo sapiens]
          Length = 464

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 13  ASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQ 57
           A+ SR  G+AP   R   S+  G  + R  RGA G  QQ+  + Q
Sbjct: 408 AAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQ 452


>gi|239752421 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 127

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 13  ASLSRAAGSAPSAARRR-RSREPGVMALRRARGAPGAGQQRAQQR 56
           A L+R  G +P  +  + R +EPG + L + +   G GQ+R   R
Sbjct: 62  AELAREGGGSPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHR 106


>gi|239746936 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 127

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 13  ASLSRAAGSAPSAARRR-RSREPGVMALRRARGAPGAGQQRAQQR 56
           A L+R  G +P  +  + R +EPG + L + +   G GQ+R   R
Sbjct: 62  AELAREGGGSPLQSEAQGRQQEPGALFLEQRQALRGRGQERRGHR 106


>gi|154146199 sal-like 3 [Homo sapiens]
          Length = 1300

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 7   ERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGA 48
           +R  P  SLS AA  APSA     S+ PG+ AL  + GAP A
Sbjct: 234 QRPPPRPSLSPAA--APSAPGPAPSQLPGLAALPLSAGAPAA 273


>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 4 [Homo sapiens]
          Length = 588

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 13  ASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQR 52
           A+ SR  G+AP   R   S+  G  + R  RGA G  QQ+
Sbjct: 471 AAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQ 510


>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 5 [Homo sapiens]
          Length = 561

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 13  ASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQR 52
           A+ SR  G+AP   R   S+  G  + R  RGA G  QQ+
Sbjct: 506 AAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQ 545


>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 1 [Homo sapiens]
          Length = 623

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 13  ASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQR 52
           A+ SR  G+AP   R   S+  G  + R  RGA G  QQ+
Sbjct: 506 AAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQ 545


>gi|239757467 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 278

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 10  RPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPG 47
           RP+   +RAA +AP + R+        +  RRAR +PG
Sbjct: 96  RPAGLAARAAAAAPRSLRKPSPSPSPSLRRRRARNSPG 133


>gi|239751993 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 278

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 10  RPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPG 47
           RP+   +RAA +AP + R+        +  RRAR +PG
Sbjct: 96  RPAGLAARAAAAAPRSLRKPSPSPSPSLRRRRARNSPG 133


>gi|239746476 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 278

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 10  RPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPG 47
           RP+   +RAA +AP + R+        +  RRAR +PG
Sbjct: 96  RPAGLAARAAAAAPRSLRKPSPSPSPSLRRRRARNSPG 133


>gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 212

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 2   EMSSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGA 48
           E   P R  P  + SR   ++P+A+ R RSR         + GAPG+
Sbjct: 105 EAERPRRPEPGGARSRPVAASPAASSRARSRP------ESSPGAPGS 145


>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
          Length = 2303

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 8    RRRPSASLSRAAGSAPSAARRRRSREPGVMAL-------RRARGAPGAGQQRAQQRQLSL 60
            RRR   S + +A SAP  A  RR R P + A+          R AP  G   A+QR  + 
Sbjct: 2006 RRRSELSSAESAASAPQGASPRRGR-PALPAVFLCSSRCEELRAAPRQGPAPARQRPPAA 2064

Query: 61   R 61
            R
Sbjct: 2065 R 2065


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 9    RRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQR 56
            R P  +  R+    P+  RR RSR P V   R     P   ++R++ R
Sbjct: 1926 RTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSR 1973



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 8   RRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSLRSIQ 64
           R   +A   R+    P+     RSR P     RR+R A   G+ R+ QR+   RS Q
Sbjct: 485 RSPATAKRGRSRSRTPTKRGHSRSRSP---QWRRSRSAQRWGRSRSPQRRGRSRSPQ 538



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 4    SSPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSLRS 62
            S  E+ R +    R+  S  ++ RR+RSR       RR RG  G    R+  RQ S R+
Sbjct: 1777 SRREKTRTTRRRDRSGSSQSTSRRRQRSRSRS-RVTRRRRGGSGY-HSRSPARQESSRT 1833



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 20/58 (34%), Positives = 26/58 (44%)

Query: 5   SPERRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQLSLRS 62
           +P +R  S S S     + SA R  RSR P      R+   PG  + R  QR+   RS
Sbjct: 499 TPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRS 556



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 9   RRPSASLSRAA---GSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQR 56
           R P    SR+A   G + S  RR RSR P      R+R     G+ R+ +R
Sbjct: 509 RSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARR 559



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 8    RRRPSASLSRAAGSAPSAARRRRSREPGVMALRRARGAPG---AGQQRAQQR 56
            RR PS S    A  + S+ RRR +  P      R   +P     G QR++ R
Sbjct: 1725 RRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSR 1776


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.122    0.325 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,899,660
Number of Sequences: 37866
Number of extensions: 118988
Number of successful extensions: 1374
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 1240
Number of HSP's gapped (non-prelim): 217
length of query: 79
length of database: 18,247,518
effective HSP length: 51
effective length of query: 28
effective length of database: 16,316,352
effective search space: 456857856
effective search space used: 456857856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.