Guide to the Human Genome
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Name: DEDD2 Sequence: fasta or formatted (326aa) NCBI GI: 19923050
Description:

death effector domain-containing DNA binding protein 2

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         32           2
 C cysteine            2.5          8           1
 D aspartate           4.0         13           1
 E glutamate           9.2         30           3
 F phenylalanine       1.8          6           1
 G glycine             9.2         30           2
 H histidine           1.2          4           1
 I isoleucine          0.6          2           1
 K lysine              1.5          5           1
 L leucine            13.5         44           3
 M methionine          1.2          4           1
 N asparagine          0.6          2           1
 P proline             4.9         16           2
 Q glutamine           4.9         16           3
 R arginine           14.1         46           5
 S serine              9.5         31           4
 T threonine           3.1         10           1
 V valine              4.9         16           2
 W tryptophan          0.9          3           1
 Y tyrosine            2.5          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   death effector domain-containing  DNA binding protei... 
DEDD                  0.362   death effector domain-containing protein 
DEDD                  0.362   death effector domain-containing protein 
DEDD                  0.362   death effector domain-containing protein 
ZRANB2                0.026   zinc finger protein 265 isoform 2 
ZRANB2                0.024   zinc finger protein 265 isoform 1 
KIAA1853              0.024   KIAA1853 protein 
LOC100170229          0.023   hypothetical protein LOC100170229 
SFRS2                 0.021   splicing factor, arginine/serine-rich 2 
PPRC1                 0.021   peroxisome proliferator-activated receptor gamma, co...
SRRM2                 0.019   splicing coactivator subunit SRm300 
C2orf16               0.019   hypothetical protein LOC84226 
USP6NL                0.019   USP6 N-terminal like isoform 1 
USP6NL                0.019   USP6 N-terminal like isoform 2 
SON                   0.019   SON DNA-binding protein isoform F 
SON                   0.019   SON DNA-binding protein isoform B 
FLJ10357              0.019   hypothetical protein LOC55701 
GPATCH8               0.019   G patch domain containing 8 
LOC100293809          0.018   PREDICTED: hypothetical protein 
LOC100130174          0.018   PREDICTED: hypothetical protein 
LOC100294366          0.018   PREDICTED: hypothetical protein 
PPIG                  0.018   peptidylprolyl isomerase G 
FLJ36031              0.018   hypothetical protein LOC168455 
LOC100130882          0.018   PREDICTED: hypothetical protein 
LOC100130882          0.018   PREDICTED: hypothetical protein 
LOC100130882          0.018   PREDICTED: hypothetical protein 
PDS5B                 0.018   PDS5, regulator of cohesion maintenance, homolog B [H...
DACT3                 0.018   thymus expressed gene 3-like 
DVL2                  0.016   dishevelled 2 
LOC100292994          0.016   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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