Guide to the Human Genome
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Name: LOC100288812 Sequence: fasta or formatted (219aa) NCBI GI: 239741872
Description:

PREDICTED: hypothetical protein XP_002342329

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         21           3
 C cysteine            4.1          9           2
 D aspartate           1.8          4           1
 E glutamate           3.7          8           1
 F phenylalanine       4.1          9           2
 G glycine             9.1         20           1
 H histidine           5.5         12           2
 I isoleucine          2.3          5           1
 K lysine              1.8          4           1
 L leucine             9.6         21           2
 M methionine          2.3          5           1
 N asparagine          1.8          4           1
 P proline             9.1         20           2
 Q glutamine           5.0         11           3
 R arginine           13.2         29           3
 S serine             12.3         27           2
 T threonine           2.3          5           1
 V valine              1.4          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342329 
LOC100289796          1.000   PREDICTED: hypothetical protein XP_002346485 
LOC100293212          0.993   PREDICTED: hypothetical protein 
LOC728392             0.037   hypothetical protein LOC728392 
AVEN                  0.035   cell death regulator aven 
LOC100127891          0.033   PREDICTED: hypothetical protein 
SRRM1                 0.033   serine/arginine repetitive matrix 1 
LOC100288496          0.030   PREDICTED: hypothetical protein XP_002342747 
TTBK1                 0.030   tau tubulin kinase 1 
VEGFA                 0.028   vascular endothelial growth factor A isoform f precu...
VEGFA                 0.028   vascular endothelial growth factor A isoform e precu...
VEGFA                 0.028   vascular endothelial growth factor A isoform d precu...
VEGFA                 0.028   vascular endothelial growth factor A isoform c precu...
VEGFA                 0.028   vascular endothelial growth factor A isoform b precu...
VEGFA                 0.028   vascular endothelial growth factor A isoform a precu...
VEGFA                 0.028   vascular endothelial growth factor A isoform g precu...
CACNA1A               0.028   calcium channel, alpha 1A subunit isoform 4 
CACNA1A               0.028   calcium channel, alpha 1A subunit isoform 3 
ZNF219                0.028   zinc finger protein 219 
ZNF219                0.028   zinc finger protein 219 
ZNF219                0.028   zinc finger protein 219 
CCDC9                 0.028   coiled-coil domain containing 9 
ZFP91                 0.028   zinc finger protein 91 
WDR33                 0.026   WD repeat domain 33 isoform 1 
SYNCRIP               0.023   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.023   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.023   synaptotagmin binding, cytoplasmic RNA interacting ...
TNFAIP3               0.023   tumor necrosis factor, alpha-induced protein 3 
LOC100132013          0.023   PREDICTED: hypothetical protein 
LOC100132013          0.023   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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