Guide to the Human Genome
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Name: LOC100292345 Sequence: fasta or formatted (183aa) NCBI GI: 239753049
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         21           2
 C cysteine            4.9          9           2
 D aspartate           1.6          3           1
 E glutamate           2.7          5           1
 F phenylalanine       4.4          8           1
 G glycine             4.4          8           1
 H histidine           1.6          3           1
 I isoleucine          3.8          7           2
 K lysine              1.1          2           1
 L leucine             7.7         14           1
 M methionine          0.5          1           1
 N asparagine          0.0          0           0
 P proline             6.6         12           2
 Q glutamine           2.7          5           1
 R arginine           16.9         31           3
 S serine             14.8         27           2
 T threonine           6.0         11           2
 V valine              4.4          8           1
 W tryptophan          3.8          7           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290040          1.000   PREDICTED: hypothetical protein XP_002347780 
ARRDC2                0.020   arrestin domain containing 2 isoform 2 
ARRDC2                0.020   arrestin domain containing 2 isoform 1 
LOC732428             0.017   PREDICTED: keratin-associated protein 9-2-like 2-li...
KRTAP4-12             0.017   keratin associated protein 4-12 
KRTAP4-8              0.014   PREDICTED: keratin associated protein 4-8 
KRTAP9-2              0.014   keratin associated protein 9.2 
KRTAP9-3              0.014   keratin associated protein 9.3 
KRTAP4-11             0.014   keratin associated protein 4-11 
LOC728318             0.014   PREDICTED: hypothetical protein 
LOC728318             0.014   PREDICTED: hypothetical protein 
LOC728318             0.014   PREDICTED: hypothetical protein 
LOC728341             0.011   PREDICTED: keratin-associated protein 9-2-like 1-li...
KRTAP4-9              0.011   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-9              0.011   keratin associated protein 4-9 
LOC100128260          0.011   PREDICTED: hCG_1742852 
C13orf18              0.011   hypothetical protein LOC80183 
GDF7                  0.011   growth differentiation factor 7 preproprotein 
LOC100128260          0.008   PREDICTED: hCG_1742852 
LOC100288773          0.008   PREDICTED: hypothetical protein XP_002343911 
LOC100128260          0.008   PREDICTED: hCG_1742852 
KRTAP9-8              0.008   keratin associated protein 9.8 
KRTAP5-4              0.008   keratin associated protein 5-4 
LOC100292592          0.008   PREDICTED: hypothetical protein 
LOC100292060          0.008   PREDICTED: hypothetical protein XP_002346153 
LOC728052             0.008   PREDICTED: hypothetical protein 
LOC100289939          0.008   PREDICTED: hypothetical protein XP_002347821 
LOC100290247          0.008   PREDICTED: hypothetical protein XP_002347043 
LOC100288866          0.008   PREDICTED: hypothetical protein XP_002343571 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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