Guide to the Human Genome
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Name: C13orf18 Sequence: fasta or formatted (662aa) NCBI GI: 156151402
Description:

hypothetical protein LOC80183

Referenced in:

Inositol Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         43           2
 C cysteine            4.5         30           2
 D aspartate           5.1         34           1
 E glutamate           6.8         45           2
 F phenylalanine       5.0         33           2
 G glycine             4.5         30           1
 H histidine           2.7         18           1
 I isoleucine          5.0         33           2
 K lysine              5.4         36           2
 L leucine             8.2         54           2
 M methionine          1.5         10           2
 N asparagine          2.7         18           1
 P proline             5.3         35           2
 Q glutamine           5.0         33           3
 R arginine            4.2         28           2
 S serine             12.2         81           3
 T threonine           5.1         34           2
 V valine              6.8         45           2
 W tryptophan          1.1          7           1
 Y tyrosine            2.3         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC80183 
KIAA0226              0.251   hypothetical protein LOC9711 isoform 1 
KIAA0226              0.250   hypothetical protein LOC9711 isoform 2 
PLEKHM3               0.103   pleckstrin homology domain containing, family M, me...
PLEKHM1               0.098   pleckstrin homology domain containing, family M (wit...
LOC100291232          0.089   PREDICTED: hypothetical protein XP_002347841 
DEF8                  0.087   differentially expressed in FDCP 8 isoform 1 
LOC100293478          0.050   PREDICTED: similar to pleckstrin homology domain co...
MUC16                 0.013   mucin 16 
LOC729792             0.011   PREDICTED: hypothetical protein 
LOC729792             0.011   PREDICTED: hypothetical protein 
LOC729792             0.011   PREDICTED: hypothetical protein 
LOC100294501          0.011   PREDICTED: hypothetical protein 
LOC100294249          0.011   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.011   PREDICTED: hypothetical protein 
LOC100294204          0.011   PREDICTED: hypothetical protein 
LOC100294136          0.011   PREDICTED: hypothetical protein 
LOC100294091          0.011   PREDICTED: hypothetical protein 
LOC730401             0.011   PREDICTED: hypothetical protein 
MARK1                 0.010   MAP/microtubule affinity-regulating kinase 1 
C15orf42              0.009   leucine-rich repeat kinase 1 
HEG1                  0.008   HEG homolog 1 
POLR2A                0.008   DNA-directed RNA polymerase II A 
ZNF469                0.008   zinc finger protein 469 
MUC17                 0.008   mucin 17 
LOC100292252          0.008   PREDICTED: hypothetical protein 
LOC100290134          0.008   PREDICTED: hypothetical protein XP_002346595 
LOC100288551          0.008   PREDICTED: hypothetical protein XP_002342436 
HR                    0.008   hairless protein isoform a 
HR                    0.008   hairless protein isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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