Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100290247 Sequence: fasta or formatted (156aa) NCBI GI: 239749435
Description:

PREDICTED: hypothetical protein XP_002347043

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         17           3
 C cysteine            9.0         14           5
 D aspartate           1.3          2           1
 E glutamate           3.2          5           1
 F phenylalanine       2.6          4           1
 G glycine             8.3         13           2
 H histidine           3.8          6           1
 I isoleucine          0.0          0           0
 K lysine              1.3          2           1
 L leucine             9.6         15           3
 M methionine          0.6          1           1
 N asparagine          0.0          0           0
 P proline            10.9         17           2
 Q glutamine           1.3          2           2
 R arginine           14.7         23           2
 S serine             10.3         16           2
 T threonine           4.5          7           1
 V valine              3.8          6           1
 W tryptophan          1.9          3           1
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347043 
LOC100292060          1.000   PREDICTED: hypothetical protein XP_002346153 
LOC100287835          1.000   PREDICTED: hypothetical protein XP_002342895 
LOC100293604          0.050   PREDICTED: hypothetical protein 
LOC100289721          0.050   PREDICTED: hypothetical protein XP_002347280 
LOC100287837          0.050   PREDICTED: hypothetical protein XP_002343157 
KRTAP5-11             0.035   keratin associated protein 5-11 
NFKBIE                0.025   nuclear factor of kappa light polypeptide gene enhan...
KRTAP5-5              0.025   keratin associated protein 5-5 
LOC100131830          0.025   PREDICTED: hypothetical protein 
LOC100131830          0.025   PREDICTED: hypothetical protein 
ILDR2                 0.025   immunoglobulin-like domain containing receptor 2 [Ho...
IGSF5                 0.025   immunoglobulin superfamily 5 like 
LOC100131830          0.022   PREDICTED: hypothetical protein 
KRTAP4-5              0.022   keratin associated protein 4-5 
LSR                   0.022   LISCH protein isoform 2 
LSR                   0.022   LISCH protein isoform 1 
DAB2IP                0.022   disabled homolog 2 interacting protein isoform 2 [Ho...
DAB2IP                0.022   disabled homolog 2 interacting protein isoform 1 [Ho...
C9orf169              0.022   hypothetical protein LOC375791 
XKR4                  0.022   XK, Kell blood group complex subunit-related family,...
KRTAP5-3              0.022   keratin associated protein 5-3 
NFATC4                0.019   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.019   nuclear factor of activated T-cells, cytoplasmic, ca...
LOC728318             0.019   PREDICTED: hypothetical protein 
LOC728318             0.019   PREDICTED: hypothetical protein 
LOC728318             0.019   PREDICTED: hypothetical protein 
KRTAP5-10             0.019   keratin associated protein 5-10 
RGS19                 0.019   G protein signalling regulator 19 
RGS19                 0.019   G protein signalling regulator 19 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press