Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100128260 Sequence: fasta or formatted (402aa) NCBI GI: 169216528
Description:

PREDICTED: hCG_1742852

Not currently referenced in the text

Other entries for this name:
alt prot {402aa} PREDICTED: hCG_1742852
alt prot {402aa} PREDICTED: hCG_1742852
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         35           3
 C cysteine            3.0         12           1
 D aspartate           5.5         22           1
 E glutamate           6.2         25           3
 F phenylalanine       4.7         19           1
 G glycine            10.7         43           2
 H histidine           4.2         17           2
 I isoleucine          1.0          4           1
 K lysine              1.5          6           1
 L leucine             8.0         32           2
 M methionine          1.5          6           1
 N asparagine          1.0          4           1
 P proline             8.7         35           2
 Q glutamine           2.5         10           1
 R arginine            9.7         39           2
 S serine              8.7         35           2
 T threonine           5.5         22           2
 V valine              5.5         22           2
 W tryptophan          2.5         10           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hCG_1742852 
LOC100128260          0.995   PREDICTED: hCG_1742852 
LOC100288773          0.989   PREDICTED: hypothetical protein XP_002343911 
LOC100128260          0.989   PREDICTED: hCG_1742852 
UTY                   0.105   tetratricopeptide repeat protein isoform 1 
LOC100128682          0.099   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.099   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.099   PREDICTED: hypothetical protein LOC100128682 
C16orf89              0.097   hypothetical protein LOC146556 isoform 1 
STAP2                 0.042   signal transducing adaptor family member 2 isoform 1...
MAP3K15               0.041   mitogen-activated protein kinase kinase kinase 15 [...
SEPSECS               0.039   Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN...
C15orf40              0.037   hypothetical protein LOC123207 isoform d 
CNGA1                 0.036   cyclic nucleotide gated channel alpha 1 isoform 1 [...
PODXL                 0.035   podocalyxin-like isoform 1 precursor 
CHEK2                 0.035   protein kinase CHK2 isoform c 
REL                   0.035   v-rel reticuloendotheliosis viral oncogene homolog [H...
LOC100132815          0.033   PREDICTED: hypothetical protein 
LOC100132815          0.033   PREDICTED: hypothetical protein 
LOC100132815          0.033   PREDICTED: hypothetical protein 
C14orf178             0.033   hypothetical protein LOC283579 
ZNF283                0.031   zinc finger protein 283 
C9orf37               0.029   chromosome 9 open reading frame 37 
ZNF195                0.029   zinc finger protein 195 isoform 2 
ZNF195                0.029   zinc finger protein 195 isoform 1 
ITGB1                 0.028   integrin beta 1 isoform 1C-1 precursor 
PPIL3                 0.028   peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo...
ITGB1                 0.027   integrin beta 1 isoform 1C-2 precursor 
LOC100294407          0.024   PREDICTED: similar to hCG2039376 
BEND2                 0.024   BEN domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press