Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100288773 Sequence: fasta or formatted (402aa) NCBI GI: 239747074
Description:

PREDICTED: hypothetical protein XP_002343911

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         34           3
 C cysteine            3.0         12           1
 D aspartate           5.0         20           1
 E glutamate           6.5         26           3
 F phenylalanine       4.7         19           1
 G glycine            10.9         44           2
 H histidine           4.0         16           1
 I isoleucine          1.0          4           1
 K lysine              1.5          6           1
 L leucine             8.0         32           2
 M methionine          1.5          6           1
 N asparagine          1.0          4           1
 P proline             8.7         35           2
 Q glutamine           2.5         10           1
 R arginine           10.0         40           2
 S serine              8.7         35           2
 T threonine           5.7         23           2
 V valine              5.5         22           2
 W tryptophan          2.5         10           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343911 
LOC100128260          1.000   PREDICTED: hCG_1742852 
LOC100128260          0.994   PREDICTED: hCG_1742852 
LOC100128260          0.990   PREDICTED: hCG_1742852 
UTY                   0.103   tetratricopeptide repeat protein isoform 1 
LOC100128682          0.094   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.094   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.094   PREDICTED: hypothetical protein LOC100128682 
C16orf89              0.094   hypothetical protein LOC146556 isoform 1 
STAP2                 0.041   signal transducing adaptor family member 2 isoform 1...
MAP3K15               0.037   mitogen-activated protein kinase kinase kinase 15 [...
C15orf40              0.036   hypothetical protein LOC123207 isoform d 
SEPSECS               0.035   Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN...
CNGA1                 0.035   cyclic nucleotide gated channel alpha 1 isoform 1 [...
CHEK2                 0.035   protein kinase CHK2 isoform c 
REL                   0.035   v-rel reticuloendotheliosis viral oncogene homolog [H...
PODXL                 0.035   podocalyxin-like isoform 1 precursor 
LOC100132815          0.031   PREDICTED: hypothetical protein 
LOC100132815          0.031   PREDICTED: hypothetical protein 
LOC100132815          0.031   PREDICTED: hypothetical protein 
C14orf178             0.031   hypothetical protein LOC283579 
PPIL3                 0.029   peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo...
ZNF195                0.028   zinc finger protein 195 isoform 2 
ZNF195                0.028   zinc finger protein 195 isoform 1 
ZNF283                0.028   zinc finger protein 283 
C9orf37               0.027   chromosome 9 open reading frame 37 
ITGB1                 0.024   integrin beta 1 isoform 1C-1 precursor 
ITGB1                 0.023   integrin beta 1 isoform 1C-2 precursor 
LOC100294407          0.023   PREDICTED: similar to hCG2039376 
SUGT1                 0.023   suppressor of G2 allele of SKP1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press