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Search of human proteins with 239752250
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752250 PREDICTED: similar to acetylserotonin
O-methyltransferase-like [Homo sapiens]
(320 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752250 PREDICTED: similar to acetylserotonin O-methyltrans... 652 0.0
gi|117553627 acetylserotonin O-methyltransferase-like [Homo sapi... 598 e-171
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 34 0.20
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 32 0.98
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ... 32 0.98
gi|8923516 ankyrin repeat and SOCS box-containing 6 isoform 1 [H... 31 1.3
gi|239743315 PREDICTED: hypothetical protein XP_002342820 [Homo ... 31 1.7
gi|239508997 PREDICTED: hypothetical protein [Homo sapiens] 31 1.7
gi|224465184 nuclear factor I/A isoform 4 [Homo sapiens] 30 2.2
gi|224465182 nuclear factor I/A isoform 3 [Homo sapiens] 30 2.2
gi|30840980 nuclear factor I/A isoform 2 [Homo sapiens] 30 2.2
gi|197927284 nuclear factor I/A isoform 1 [Homo sapiens] 30 2.2
gi|7706501 WW domain binding protein 11 [Homo sapiens] 30 2.2
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ... 30 3.7
gi|239508698 PREDICTED: similar to mucin [Homo sapiens] 30 3.7
gi|20070260 cofactor of BRCA1 [Homo sapiens] 30 3.7
gi|38569495 ELL associated factor 1 [Homo sapiens] 29 4.9
gi|4759248 tryptophan hydroxylase 1 [Homo sapiens] 29 6.4
gi|57242761 receptor (TNFRSF)-interacting serine-threonine kinas... 29 6.4
gi|155969707 insulin-degrading enzyme [Homo sapiens] 29 6.4
gi|41406057 amyloid beta A4 protein isoform c precursor [Homo sa... 28 8.3
gi|41406055 amyloid beta A4 protein isoform b precursor [Homo sa... 28 8.3
gi|4502167 amyloid beta A4 protein isoform a precursor [Homo sap... 28 8.3
gi|209915570 amyloid beta A4 protein isoform e precursor [Homo s... 28 8.3
gi|209915573 amyloid beta A4 protein isoform f precursor [Homo s... 28 8.3
>gi|239752250 PREDICTED: similar to acetylserotonin
O-methyltransferase-like [Homo sapiens]
Length = 320
Score = 652 bits (1682), Expect = 0.0
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MVLCPVIGKLLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAME 60
MVLCPVIGKLLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAME
Sbjct: 1 MVLCPVIGKLLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAME 60
Query: 61 TAKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHS 120
TAKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHS
Sbjct: 61 TAKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHS 120
Query: 121 VFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQA 180
VFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQA
Sbjct: 121 VFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQA 180
Query: 181 LGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYYPPRPEDLRRSVKHDPIPAADTFEDLSD 240
LGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYYPPRPEDLRRSVKHDPIPAADTFEDLSD
Sbjct: 181 LGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYYPPRPEDLRRSVKHDPIPAADTFEDLSD 240
Query: 241 VEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFPTRLLELIEGFMLSKG 300
VEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFPTRLLELIEGFMLSKG
Sbjct: 241 VEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFPTRLLELIEGFMLSKG 300
Query: 301 PACCWWRRSWMRRRGWRSAP 320
PACCWWRRSWMRRRGWRSAP
Sbjct: 301 PACCWWRRSWMRRRGWRSAP 320
>gi|117553627 acetylserotonin O-methyltransferase-like [Homo
sapiens]
Length = 621
Score = 598 bits (1541), Expect = e-171
Identities = 299/300 (99%), Positives = 299/300 (99%)
Query: 1 MVLCPVIGKLLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAME 60
MVLCPVIGKLLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAME
Sbjct: 1 MVLCPVIGKLLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAME 60
Query: 61 TAKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHS 120
TAKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHS
Sbjct: 61 TAKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHS 120
Query: 121 VFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQA 180
VFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQA
Sbjct: 121 VFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQA 180
Query: 181 LGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYYPPRPEDLRRSVKHDPIPAADTFEDLSD 240
LGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYYPPRPEDLRRSVKHD IPAADTFEDLSD
Sbjct: 181 LGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYYPPRPEDLRRSVKHDSIPAADTFEDLSD 240
Query: 241 VEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFPTRLLELIEGFMLSKG 300
VEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFPTRLLELIEGFMLSKG
Sbjct: 241 VEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFPTRLLELIEGFMLSKG 300
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 33.9 bits (76), Expect = 0.20
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 216 RPEDLRRSVKHDPIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECH 275
R + RRS++ P+P+ GG+E G+ D + A AG+++ +C
Sbjct: 40 RQDPSRRSIRLRPLPSPSP-----SAAAGGTESRSSALGAADSEGPARGAGKSSTNGDCR 94
Query: 276 RTRETLPPFPTR 287
R R +L +R
Sbjct: 95 RFRGSLASLGSR 106
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 31.6 bits (70), Expect = 0.98
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 258 EKAEAGEAGQATAEAECHRTRETL--PPFPTRLLELIEGFMLSKGPACCWWRRSWMRRRG 315
E A GE E + H RE L PP P + LI GF + +G W SW R G
Sbjct: 279 EDATPGEGRLPDFEKQPHSPRERLDPPPAPFGQMILILGFRVGRGGTGSW---SWRRGAG 335
Query: 316 WRSAP 320
P
Sbjct: 336 SAELP 340
>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
sapiens]
Length = 459
Score = 31.6 bits (70), Expect = 0.98
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 258 EKAEAGEAGQATAEAECHRTRETL--PPFPTRLLELIEGFMLSKGPACCWWRRSWMRRRG 315
E A GE E + H RE L PP P + LI GF + +G W SW R G
Sbjct: 279 EDATPGEGRLPDFEKQPHSPRERLDPPPAPFGQMILILGFRVGRGGTGSW---SWRRGAG 335
Query: 316 WRSAP 320
P
Sbjct: 336 SAELP 340
>gi|8923516 ankyrin repeat and SOCS box-containing 6 isoform 1 [Homo
sapiens]
Length = 421
Score = 31.2 bits (69), Expect = 1.3
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 146 EETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQALGGML--VESVHGDFLNVVGFP--L 201
+E+ +E +L V + + + + I +G + ++++H + +P L
Sbjct: 316 DESHADLLRKAETVLDLMVTNSQKLQLPENFDIHPVGSLAEKIQALHFSLRQLESYPPPL 375
Query: 202 NHFCKQLVKLYYPPRPEDLRRSVKHDPIP 230
H C+ ++LY P P D++ VK P+P
Sbjct: 376 KHLCRVAIRLYLQPWPVDVK--VKALPLP 402
>gi|239743315 PREDICTED: hypothetical protein XP_002342820 [Homo
sapiens]
Length = 248
Score = 30.8 bits (68), Expect = 1.7
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 236 EDLSDVEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFP---------- 285
E+L +GGG E ++AG DE+ G+A A +TR P P
Sbjct: 65 EELGRHDGGGEEAQAQEAGDGDERYILEGCGRARAGVP--QTRAPGSPLPLGSVPDPRCD 122
Query: 286 TRLLELIEGFMLSKGPACCW--WRRSWMRRRGWR 317
T L G G CW +RS RR+ WR
Sbjct: 123 TASLPSPAG----GGRTSCWAPGKRSRTRRKSWR 152
>gi|239508997 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 30.8 bits (68), Expect = 1.7
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 236 EDLSDVEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFP---------- 285
E+L +GGG E ++AG DE+ G+A A +TR P P
Sbjct: 65 EELGRHDGGGEEAQAQEAGDGDERYILEGCGRARAGVP--QTRAPGSPLPLGSVPDPRCD 122
Query: 286 TRLLELIEGFMLSKGPACCW--WRRSWMRRRGWR 317
T L G G CW +RS RR+ WR
Sbjct: 123 TASLPSPAG----GGRTSCWAPGKRSRTRRKSWR 152
>gi|224465184 nuclear factor I/A isoform 4 [Homo sapiens]
Length = 554
Score = 30.4 bits (67), Expect = 2.2
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 18/95 (18%)
Query: 157 EELLWEYVHSGEPM--DKAGGYGIQALGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYYP 214
+E L E+V P +AG G G VH FL P P
Sbjct: 438 QETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLP-------------P 484
Query: 215 PRPEDLRRSVKHDPIPAADTFEDLSDVEGGGSEPT 249
P P + R V P+P DT + EGG + PT
Sbjct: 485 PPPPPMARPV---PLPVPDTKPPTTSTEGGAASPT 516
>gi|224465182 nuclear factor I/A isoform 3 [Homo sapiens]
Length = 501
Score = 30.4 bits (67), Expect = 2.2
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 18/95 (18%)
Query: 157 EELLWEYVHSGEPM--DKAGGYGIQALGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYYP 214
+E L E+V P +AG G G VH FL P P
Sbjct: 385 QETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLP-------------P 431
Query: 215 PRPEDLRRSVKHDPIPAADTFEDLSDVEGGGSEPT 249
P P + R V P+P DT + EGG + PT
Sbjct: 432 PPPPPMARPV---PLPVPDTKPPTTSTEGGAASPT 463
>gi|30840980 nuclear factor I/A isoform 2 [Homo sapiens]
Length = 498
Score = 30.4 bits (67), Expect = 2.2
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 18/95 (18%)
Query: 157 EELLWEYVHSGEPM--DKAGGYGIQALGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYYP 214
+E L E+V P +AG G G VH FL P P
Sbjct: 393 QETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLP-------------P 439
Query: 215 PRPEDLRRSVKHDPIPAADTFEDLSDVEGGGSEPT 249
P P + R V P+P DT + EGG + PT
Sbjct: 440 PPPPPMARPV---PLPVPDTKPPTTSTEGGAASPT 471
>gi|197927284 nuclear factor I/A isoform 1 [Homo sapiens]
Length = 509
Score = 30.4 bits (67), Expect = 2.2
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 18/95 (18%)
Query: 157 EELLWEYVHSGEPM--DKAGGYGIQALGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYYP 214
+E L E+V P +AG G G VH FL P P
Sbjct: 393 QETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLP-------------P 439
Query: 215 PRPEDLRRSVKHDPIPAADTFEDLSDVEGGGSEPT 249
P P + R V P+P DT + EGG + PT
Sbjct: 440 PPPPPMARPV---PLPVPDTKPPTTSTEGGAASPT 471
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 30.4 bits (67), Expect = 2.2
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 217 PEDLRRSVKHDPIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAE 261
PED+ + D +DT D SD E G E RD G RD E
Sbjct: 259 PEDMDQDKHDDSTDDSDT--DKSDGESDGDEFVHRDNGERDNNEE 301
>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
sapiens]
Length = 306
Score = 29.6 bits (65), Expect = 3.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 243 GGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFPTR 287
G GS P+ G++D + EA A T+ HRT + P P R
Sbjct: 52 GSGSSPSADQQGAQDREEEAAAAPAPTSRG--HRTEKRKPQQPQR 94
>gi|239508698 PREDICTED: similar to mucin [Homo sapiens]
Length = 265
Score = 29.6 bits (65), Expect = 3.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 243 GGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFPTR 287
G GS P+ G++D + EA A T+ HRT + P P R
Sbjct: 123 GSGSSPSADQQGAQDREEEAAAAPAPTSRG--HRTEKRKPQQPQR 165
>gi|20070260 cofactor of BRCA1 [Homo sapiens]
Length = 580
Score = 29.6 bits (65), Expect = 3.7
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 19 SASPRRQEILSNA-----GLRFEVVPSKFKEKLDKASFATPYGYAMETAKQKALEVANRL 73
+ASPR++ + +A L V PSK E L KA P G + E K+ ++ +L
Sbjct: 492 TASPRKENVHRHALRLLIHLHPRVAPSKL-EALQKA--LEPTGQSGEAVKELYSQLGEKL 548
Query: 74 YQKDLRAPDVVIGADT 89
Q D R P A+T
Sbjct: 549 EQLDHRKPSPAQAAET 564
>gi|38569495 ELL associated factor 1 [Homo sapiens]
Length = 268
Score = 29.3 bits (64), Expect = 4.9
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 215 PRPEDLRRSVKHDPIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAEAG--EAGQATAEA 272
P PE +K + D E +S G S ++ +GS D+ + +G + G A+
Sbjct: 164 PSPEPQLDDIKRELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQ 223
Query: 273 ECHR 276
H+
Sbjct: 224 PSHQ 227
>gi|4759248 tryptophan hydroxylase 1 [Homo sapiens]
Length = 444
Score = 28.9 bits (63), Expect = 6.4
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 175 GYGIQALGGMLVESVHGDFLNVVGFPLNHFCKQLVKL----YYPPRPEDLRRSVKHDPIP 230
G+ I+ + G L DFL+ + F + H C Q V+ +Y P P+ + H P+
Sbjct: 226 GFSIRPVAGYLSPR---DFLSGLAFRVFH-CTQYVRHSSDPFYTPEPDTCHELLGHVPLL 281
Query: 231 AADTFEDLSDVEGGGSEPTQRDA 253
A +F S G S +A
Sbjct: 282 AEPSFAQFSQEIGLASLGASEEA 304
>gi|57242761 receptor (TNFRSF)-interacting serine-threonine kinase 1
[Homo sapiens]
Length = 671
Score = 28.9 bits (63), Expect = 6.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 216 RPEDLRRSVKHDPIPAADTFEDLSDVEGGGS 246
R E+ RR V HDP +E+ + EG G+
Sbjct: 407 REEERRRRVSHDPFAQQRPYENFQNTEGKGT 437
>gi|155969707 insulin-degrading enzyme [Homo sapiens]
Length = 1019
Score = 28.9 bits (63), Expect = 6.4
Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 3 LCPVIGKLLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAMET- 61
LCP+ + R V A S + ++++A F++ + K + F T Y +ET
Sbjct: 170 LCPLFDESCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETR 229
Query: 62 -------AKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILE 99
+Q+ L+ + Y +L A V+G +++ + L+++
Sbjct: 230 PNQEGIDVRQELLKFHSAYYSSNLMAV-CVLGRESLDDLTNLVVK 273
>gi|41406057 amyloid beta A4 protein isoform c precursor [Homo
sapiens]
Length = 695
Score = 28.5 bits (62), Expect = 8.3
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 227 DPIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAE 273
D + +AD ED SDV GG++ D GS D+ E E + AE E
Sbjct: 194 DNVDSADAEEDDSDVWWGGADTDYAD-GSEDKVVEVAEE-EEVAEVE 238
>gi|41406055 amyloid beta A4 protein isoform b precursor [Homo
sapiens]
Length = 751
Score = 28.5 bits (62), Expect = 8.3
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 227 DPIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAE 273
D + +AD ED SDV GG++ D GS D+ E E + AE E
Sbjct: 194 DNVDSADAEEDDSDVWWGGADTDYAD-GSEDKVVEVAEE-EEVAEVE 238
>gi|4502167 amyloid beta A4 protein isoform a precursor [Homo
sapiens]
Length = 770
Score = 28.5 bits (62), Expect = 8.3
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 227 DPIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAE 273
D + +AD ED SDV GG++ D GS D+ E E + AE E
Sbjct: 194 DNVDSADAEEDDSDVWWGGADTDYAD-GSEDKVVEVAEE-EEVAEVE 238
>gi|209915570 amyloid beta A4 protein isoform e precursor [Homo
sapiens]
Length = 639
Score = 28.5 bits (62), Expect = 8.3
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 227 DPIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAE 273
D + +AD ED SDV GG++ D GS D+ E E + AE E
Sbjct: 138 DNVDSADAEEDDSDVWWGGADTDYAD-GSEDKVVEVAEE-EEVAEVE 182
>gi|209915573 amyloid beta A4 protein isoform f precursor [Homo
sapiens]
Length = 714
Score = 28.5 bits (62), Expect = 8.3
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 227 DPIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAE 273
D + +AD ED SDV GG++ D GS D+ E E + AE E
Sbjct: 138 DNVDSADAEEDDSDVWWGGADTDYAD-GSEDKVVEVAEE-EEVAEVE 182
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,870,243
Number of Sequences: 37866
Number of extensions: 595611
Number of successful extensions: 1884
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1877
Number of HSP's gapped (non-prelim): 28
length of query: 320
length of database: 18,247,518
effective HSP length: 102
effective length of query: 218
effective length of database: 14,385,186
effective search space: 3135970548
effective search space used: 3135970548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.