Guide to the Human Genome
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Name: RIPK1 Sequence: fasta or formatted (671aa) NCBI GI: 57242761
Description:

receptor (TNFRSF)-interacting serine-threonine kinase 1

Referenced in:

TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         35           2
 C cysteine            1.5         10           1
 D aspartate           4.3         29           2
 E glutamate           8.6         58           3
 F phenylalanine       2.7         18           1
 G glycine             6.4         43           2
 H histidine           3.3         22           1
 I isoleucine          5.2         35           2
 K lysine              6.6         44           2
 L leucine             8.8         59           2
 M methionine          3.6         24           2
 N asparagine          6.0         40           2
 P proline             5.7         38           2
 Q glutamine           4.8         32           2
 R arginine            4.3         29           4
 S serine              8.5         57           3
 T threonine           4.3         29           2
 V valine              5.1         34           2
 W tryptophan          1.0          7           1
 Y tyrosine            4.2         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   receptor (TNFRSF)-interacting serine-threonine kinas... 
RIPK3                 0.086   receptor-interacting serine-threonine kinase 3 [Homo...
RIPK4                 0.083   ankyrin repeat domain 3 
RIPK2                 0.080   receptor-interacting serine-threonine kinase 2 
ANKK1                 0.076   ankyrin repeat and kinase domain containing 1 
MATK                  0.072   megakaryocyte-associated tyrosine kinase isoform c [...
MATK                  0.072   megakaryocyte-associated tyrosine kinase isoform b [...
MATK                  0.072   megakaryocyte-associated tyrosine kinase isoform a [...
LYN                   0.071   Yamaguchi sarcoma viral (v-yes-1) oncogene homolog ...
LYN                   0.071   Yamaguchi sarcoma viral (v-yes-1) oncogene homolog is...
IGF1R                 0.070   insulin-like growth factor 1 receptor precursor [Homo...
LCK                   0.070   lymphocyte-specific protein tyrosine kinase precurs...
LCK                   0.070   lymphocyte-specific protein tyrosine kinase precurs...
CSK                   0.068   c-src tyrosine kinase 
CSK                   0.068   c-src tyrosine kinase 
HCK                   0.067   hemopoietic cell kinase isoform p61HCK 
INSR                  0.066   insulin receptor isoform Short precursor 
INSR                  0.066   insulin receptor isoform Long precursor 
TESK2                 0.065   testis-specific protein kinase 2 
FGFR4                 0.063   fibroblast growth factor receptor 4 isoform 2 precur...
FGFR4                 0.063   fibroblast growth factor receptor 4 isoform 1 precur...
FGFR4                 0.063   fibroblast growth factor receptor 4 isoform 1 precur...
LIMK2                 0.063   LIM domain kinase 2 isoform 2b 
LIMK2                 0.063   LIM domain kinase 2 isoform 2a 
ITK                   0.062   IL2-inducible T-cell kinase 
LIMK1                 0.062   LIM domain kinase 1 
INSRR                 0.062   insulin receptor-related receptor precursor 
BLK                   0.061   B lymphoid tyrosine kinase 
FGFR1                 0.061   fibroblast growth factor receptor 1 isoform 4 precur...
FGFR1                 0.061   fibroblast growth factor receptor 1 isoform 3 precur...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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