Guide to the Human Genome
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Name: LOC100133578 Sequence: fasta or formatted (320aa) NCBI GI: 239752250
Description:

PREDICTED: similar to acetylserotonin O-methyltransferase-like

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         26           2
 C cysteine            1.9          6           2
 D aspartate           5.3         17           1
 E glutamate           8.8         28           2
 F phenylalanine       3.8         12           1
 G glycine             7.8         25           3
 H histidine           2.8          9           1
 I isoleucine          2.8          9           1
 K lysine              6.2         20           1
 L leucine             9.7         31           2
 M methionine          2.2          7           1
 N asparagine          1.2          4           1
 P proline             5.9         19           2
 Q glutamine           2.8          9           1
 R arginine            7.5         24           3
 S serine              6.9         22           2
 T threonine           4.1         13           1
 V valine              7.8         25           2
 W tryptophan          1.6          5           2
 Y tyrosine            2.8          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to acetylserotonin O-methyltrans... 
ASMTL                 0.914   acetylserotonin O-methyltransferase-like 
HCN4                  0.014   hyperpolarization activated cyclic nucleotide-gated p...
LOC100292122          0.011   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.011   PREDICTED: hypothetical protein XP_002344191 
ASB6                  0.010   ankyrin repeat and SOCS box-containing 6 isoform 1 [H...
LOC100287390          0.010   PREDICTED: hypothetical protein XP_002342820 
LOC100287390          0.010   PREDICTED: hypothetical protein 
NFIA                  0.008   nuclear factor I/A isoform 4 
NFIA                  0.008   nuclear factor I/A isoform 3 
NFIA                  0.008   nuclear factor I/A isoform 2 
NFIA                  0.008   nuclear factor I/A isoform 1 
WBP11                 0.008   WW domain binding protein 11 
LOC100288496          0.008   PREDICTED: hypothetical protein XP_002342747 
LOC100134702          0.008   PREDICTED: similar to mucin 
COBRA1                0.008   cofactor of BRCA1 
EAF1                  0.006   ELL associated factor 1 
TPH1                  0.006   tryptophan hydroxylase 1 
RIPK1                 0.006   receptor (TNFRSF)-interacting serine-threonine kinas...
IDE                   0.006   insulin-degrading enzyme 
APP                   0.005   amyloid beta A4 protein isoform c precursor 
APP                   0.005   amyloid beta A4 protein isoform b precursor 
APP                   0.005   amyloid beta A4 protein isoform a precursor 
APP                   0.005   amyloid beta A4 protein isoform e precursor 
APP                   0.005   amyloid beta A4 protein isoform f precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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