COBRA1 11809

Name: COBRA1	Sequence: fasta or formatted (580aa)		NCBI GI: 20070260
Description: cofactor of BRCA1		Referenced in: DNases, Recombination, and DNA Repair
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.7 39 2 C cysteine 1.9 11 1 D aspartate 5.3 31 2 E glutamate 8.3 48 2 F phenylalanine 5.2 30 2 G glycine 4.5 26 1 H histidine 2.6 15 1 I isoleucine 2.2 13 1 K lysine 6.4 37 2 L leucine 17.2 100 5 M methionine 2.4 14 1 N asparagine 2.4 14 1 P proline 5.9 34 1 Q glutamine 5.0 29 1 R arginine 5.2 30 2 S serine 5.3 31 2 T threonine 4.5 26 1 V valine 6.7 39 2 W tryptophan 0.5 3 1 Y tyrosine 1.7 10 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 cofactor of BRCA1 SMARCA2 0.007 SWI/SNF-related matrix-associated actin-dependent re... SMARCA2 0.007 SWI/SNF-related matrix-associated actin-dependent re... AMBN 0.007 ameloblastin precursor TTN 0.007 titin isoform N2-A TTN 0.007 titin isoform novex-2 TTN 0.007 titin isoform novex-1 TTN 0.007 titin isoform N2-B PI4KA 0.006 phosphatidylinositol 4-kinase type 3 alpha isoform ... SYCE1 0.006 synaptonemal complex central element protein 1 isof... SYCE1 0.006 synaptonemal complex central element protein 1 isof... MAP1B 0.006 microtubule-associated protein 1B CASC3 0.006 metastatic lymph node 51 DOCK3 0.005 dedicator of cytokinesis 3 SYNE2 0.005 spectrin repeat containing, nuclear envelope 2 isof... SYNE2 0.005 spectrin repeat containing, nuclear envelope 2 isof... MACF1 0.004 microfilament and actin filament cross-linker protei... MACF1 0.004 microfilament and actin filament cross-linker protei... FRAT2 0.004 GSK-3 binding protein FRAT2 LOC100133578 0.004 PREDICTED: similar to acetylserotonin O-methyltrans... ASMTL 0.004 acetylserotonin O-methyltransferase-like CCNK 0.004 cyclin K isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.