Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287390 Sequence: fasta or formatted (248aa) NCBI GI: 239508997
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {248aa} PREDICTED: hypothetical protein XP_002342820
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         28           2
 C cysteine            3.6          9           1
 D aspartate           4.0         10           1
 E glutamate           4.4         11           2
 F phenylalanine       0.8          2           1
 G glycine            13.3         33           3
 H histidine           2.4          6           1
 I isoleucine          0.8          2           1
 K lysine              1.6          4           1
 L leucine             6.0         15           1
 M methionine          1.2          3           1
 N asparagine          1.2          3           1
 P proline             5.2         13           1
 Q glutamine           4.4         11           2
 R arginine           12.1         30           2
 S serine             11.7         29           2
 T threonine           7.7         19           2
 V valine              5.2         13           1
 W tryptophan          2.4          6           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287390          1.000   PREDICTED: hypothetical protein XP_002342820 
DMRT2                 0.035   doublesex and mab-3 related transcription factor 2 ...
DMRT2                 0.035   doublesex and mab-3 related transcription factor 2 is...
DMRT2                 0.035   doublesex and mab-3 related transcription factor 2 ...
LOC100292370          0.025   PREDICTED: hypothetical protein 
SRRM2                 0.025   splicing coactivator subunit SRm300 
SFRS16                0.023   splicing factor, arginine/serine-rich 16 
FLJ37078              0.021   hypothetical protein LOC222183 
VHL                   0.018   von Hippel-Lindau tumor suppressor isoform 2 
VHL                   0.018   von Hippel-Lindau tumor suppressor isoform 1 
PKD1L1                0.018   polycystin-1L1 
LOC729580             0.016   PREDICTED: hypothetical protein 
LOC100290286          0.016   PREDICTED: hypothetical protein XP_002348149 
LOC100288658          0.016   PREDICTED: hypothetical protein XP_002342750 
LOC100288658          0.016   PREDICTED: hypothetical protein 
LOC100129463          0.016   PREDICTED: hypothetical protein 
LOC100291574          0.016   PREDICTED: hypothetical protein XP_002345618 
LOC100129463          0.016   PREDICTED: hypothetical protein 
LOC100129463          0.016   PREDICTED: hypothetical protein 
LOC100287418          0.016   PREDICTED: hypothetical protein XP_002342289 
LOC100129463          0.016   PREDICTED: hypothetical protein 
SPACA3                0.016   sperm acrosome associated 3 
KNDC1                 0.016   kinase non-catalytic C-lobe domain (KIND) containin...
LOC388780             0.014   PREDICTED: hypothetical protein 
LOC100291061          0.014   PREDICTED: hypothetical protein XP_002348193 
LOC388780             0.014   PREDICTED: hypothetical protein 
LOC100287602          0.014   PREDICTED: hypothetical protein XP_002343855 
LOC100289204          0.014   PREDICTED: hypothetical protein XP_002343822 
JMY                   0.014   junction-mediating and regulatory protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press