NFIA 11539

Name: NFIA	Sequence: fasta or formatted (509aa)		NCBI GI: 197927284
Description: nuclear factor I/A isoform 1		Referenced in: RNA Polymerase and General Transcription Factors
Other entries for this name: alt prot [501aa] nuclear factor I/A isoform 3 alt prot [554aa] nuclear factor I/A isoform 4 alt prot [498aa] nuclear factor I/A isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.9 25 2 C cysteine 1.4 7 2 D aspartate 4.1 21 1 E glutamate 5.5 28 3 F phenylalanine 4.3 22 1 G glycine 6.3 32 2 H histidine 2.9 15 2 I isoleucine 2.6 13 2 K lysine 5.7 29 2 L leucine 7.5 38 2 M methionine 2.0 10 1 N asparagine 2.0 10 1 P proline 12.2 62 7 Q glutamine 5.3 27 2 R arginine 4.9 25 2 S serine 12.4 63 3 T threonine 6.5 33 2 V valine 6.1 31 1 W tryptophan 1.0 5 1 Y tyrosine 2.6 13 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 nuclear factor I/A isoform 1 NFIA 1.000 nuclear factor I/A isoform 4 NFIA 0.981 nuclear factor I/A isoform 3 NFIA 0.927 nuclear factor I/A isoform 2 NFIX 0.563 nuclear factor I/X (CCAAT-binding transcription fact... NFIC 0.537 nuclear factor I/C isoform 2 NFIC 0.476 nuclear factor I/C isoform 1 NFIB 0.466 nuclear factor I/B POLR2A 0.036 DNA-directed RNA polymerase II A WASF1 0.033 Wiskott-Aldrich syndrome protein family member 1 [Ho... WASF1 0.033 Wiskott-Aldrich syndrome protein family member 1 [Ho... WASF1 0.033 Wiskott-Aldrich syndrome protein family member 1 [Ho... WASF1 0.033 Wiskott-Aldrich syndrome protein family member 1 [Hom... FLJ22184 0.029 PREDICTED: hypothetical protein LOC80164 RERE 0.026 atrophin-1 like protein isoform b RERE 0.026 atrophin-1 like protein isoform a RERE 0.026 atrophin-1 like protein isoform a LOC284297 0.026 hypothetical protein LOC284297 FLJ22184 0.025 PREDICTED: hypothetical protein FLJ22184 SF1 0.025 splicing factor 1 isoform 3 SF1 0.025 splicing factor 1 isoform 2 SF1 0.025 splicing factor 1 isoform 1 LOC100133756 0.025 PREDICTED: hypothetical protein, partial RAPH1 0.024 Ras association and pleckstrin homology domains 1 is... IQSEC2 0.024 IQ motif and Sec7 domain 2 isoform1 PRG4 0.024 proteoglycan 4 isoform D PRG4 0.024 proteoglycan 4 isoform C PRG4 0.024 proteoglycan 4 isoform B PRG4 0.024 proteoglycan 4 isoform A EP300 0.023 E1A binding protein p300 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.