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Search of human proteins with 239752105
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752105 PREDICTED: hypothetical protein [Homo sapiens]
(79 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757603 PREDICTED: hypothetical protein [Homo sapiens] 162 4e-41
gi|239752105 PREDICTED: hypothetical protein [Homo sapiens] 162 4e-41
gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo ... 107 3e-24
gi|19923050 death effector domain-containing DNA binding protei... 36 0.006
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 35 0.010
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 35 0.010
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 35 0.010
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 35 0.010
gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens] 34 0.029
gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens] 34 0.029
gi|7657615 podocin [Homo sapiens] 33 0.038
gi|239755074 PREDICTED: hypothetical protein [Homo sapiens] 33 0.038
gi|239749600 PREDICTED: hypothetical protein XP_002347101 [Homo ... 33 0.038
gi|239743867 PREDICTED: hypothetical protein XP_002342984 [Homo ... 33 0.038
gi|239756862 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|239746493 PREDICTED: hypothetical protein XP_002343745 [Homo ... 33 0.064
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 32 0.14
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|92859871 SMAD family member 6 isoform 1 [Homo sapiens] 32 0.14
gi|124494251 BCL2-associated athanogene isoform 1L [Homo sapiens] 32 0.14
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi... 32 0.14
gi|218749848 family with sequence similarity 38, member A [Homo ... 32 0.14
gi|122937211 KIAA0368 protein [Homo sapiens] 31 0.19
gi|14719402 homolog of yeast ribosome biogenesis regulatory prot... 31 0.24
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 31 0.24
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ... 31 0.24
gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo ... 31 0.24
gi|120587019 zinc finger protein 318 [Homo sapiens] 31 0.24
gi|240849329 hypothetical protein LOC728392 [Homo sapiens] 30 0.32
>gi|239757603 PREDICTED: hypothetical protein [Homo sapiens]
Length = 79
Score = 162 bits (411), Expect = 4e-41
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MGSARFIPTKPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAGRE 60
MGSARFIPTKPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAGRE
Sbjct: 1 MGSARFIPTKPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAGRE 60
Query: 61 PKGAGRRRRPGAPRGPFTQ 79
PKGAGRRRRPGAPRGPFTQ
Sbjct: 61 PKGAGRRRRPGAPRGPFTQ 79
>gi|239752105 PREDICTED: hypothetical protein [Homo sapiens]
Length = 79
Score = 162 bits (411), Expect = 4e-41
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MGSARFIPTKPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAGRE 60
MGSARFIPTKPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAGRE
Sbjct: 1 MGSARFIPTKPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAGRE 60
Query: 61 PKGAGRRRRPGAPRGPFTQ 79
PKGAGRRRRPGAPRGPFTQ
Sbjct: 61 PKGAGRRRRPGAPRGPFTQ 79
>gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo
sapiens]
Length = 245
Score = 107 bits (266), Expect = 3e-24
Identities = 57/75 (76%), Positives = 58/75 (77%), Gaps = 4/75 (5%)
Query: 1 MGSARFIPTKPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAGRE 60
MGSARFIPTKPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQR P
Sbjct: 1 MGSARFIPTKPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQRTPGPDGQDAS 60
Query: 61 PKG----AGRRRRPG 71
P+ GR RR G
Sbjct: 61 PRAREEDGGRERRGG 75
>gi|19923050 death effector domain-containing DNA binding protein 2
[Homo sapiens]
Length = 326
Score = 36.2 bits (82), Expect = 0.006
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 8 PTKPRTVAIKPSAFSRRNPG---REKDGSASLEGARRQRRVGS----RQRYARPGRAGRE 60
P P + S+ S+R G R + S+S + Q GS RQR +R GR
Sbjct: 109 PVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSR----GR- 163
Query: 61 PKGAGRRRRPGAPRGPFTQ 79
P G RRRR GAP P Q
Sbjct: 164 PSGGARRRRRGAPAAPQQQ 182
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 35.4 bits (80), Expect = 0.010
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 18 PSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAGREPKGAGRRRRPGAPR 74
P A +R PGR G + G+R Q GS Q ARP RAG +P RR APR
Sbjct: 142 PQAAARTAPGRAASGGSG-PGSRGQ---GSDQVGARPSRAGGQPPPLTCRRCRAAPR 194
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 35.4 bits (80), Expect = 0.010
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 18 PSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAGREPKGAGRRRRPGAPR 74
P A +R PGR G + G+R Q GS Q ARP RAG +P RR APR
Sbjct: 142 PQAAARTAPGRAASGGSG-PGSRGQ---GSDQVGARPSRAGGQPPPLTCRRCRAAPR 194
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 35.4 bits (80), Expect = 0.010
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 18 PSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAGREPKGAGRRRRPGAPR 74
P A +R PGR G + G+R Q GS Q ARP RAG +P RR APR
Sbjct: 142 PQAAARTAPGRAASGGSG-PGSRGQ---GSDQVGARPSRAGGQPPPLTCRRCRAAPR 194
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 35.4 bits (80), Expect = 0.010
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 18 PSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAGREPKGAGRRRRPGAPR 74
P A +R PGR G + G+R Q GS Q ARP RAG +P RR APR
Sbjct: 142 PQAAARTAPGRAASGGSG-PGSRGQ---GSDQVGARPSRAGGQPPPLTCRRCRAAPR 194
>gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 33.9 bits (76), Expect = 0.029
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 28 REKDGSASLEGARRQRRVGSRQR---YARPGRAGREPKGAGRRRRPGAPR 74
R + SA G RRQ + GSR R + R R RE +G RRRR R
Sbjct: 6 RSRSRSAGRRGRRRQSQSGSRSRSRSHGRRNRRRREDEGRRRRRRRSRER 55
>gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 33.9 bits (76), Expect = 0.029
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 28 REKDGSASLEGARRQRRVGSRQR---YARPGRAGREPKGAGRRRRPGAPR 74
R + SA G RRQ + GSR R + R R RE +G RRRR R
Sbjct: 6 RSRSRSAGRRGRRRQSQSGSRSRSRSHGRRNRRRREDEGRRRRRRRSRER 55
>gi|7657615 podocin [Homo sapiens]
Length = 383
Score = 33.5 bits (75), Expect = 0.038
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 24 RNPGREKDGSASLEGARRQRRVGSRQRYARPGR--AGREPKGAGRRRRPGAPRGP 76
R+ RE G + +R + + GR AG EP G+GR PG PR P
Sbjct: 6 RSSSRESRGRGGRTPHKENKRAKAERSGGGRGRQEAGPEPSGSGRAGTPGEPRAP 60
>gi|239755074 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 33.5 bits (75), Expect = 0.038
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 7 IPTKPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAG-REPKGAG 65
+ + PR +KP R PG E S LE G R++ A PG G R P+ AG
Sbjct: 16 VVSPPRPARLKPD---RAGPGVENGPSPGLERQTHGAH-GGRRQVAAPGEQGARSPENAG 71
Query: 66 RR---------RRPGAPRG 75
RR RPG+ G
Sbjct: 72 RRSGSETAGKHERPGSGGG 90
>gi|239749600 PREDICTED: hypothetical protein XP_002347101 [Homo
sapiens]
Length = 160
Score = 33.5 bits (75), Expect = 0.038
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 7 IPTKPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAG-REPKGAG 65
+ + PR +KP R PG E S LE G R++ A PG G R P+ AG
Sbjct: 16 VVSPPRPARLKPD---RAGPGVENGPSPGLERQTHGAH-GGRRQVAAPGEQGARSPENAG 71
Query: 66 RR---------RRPGAPRG 75
RR RPG+ G
Sbjct: 72 RRSGSETAGKHERPGSGGG 90
>gi|239743867 PREDICTED: hypothetical protein XP_002342984 [Homo
sapiens]
Length = 160
Score = 33.5 bits (75), Expect = 0.038
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 7 IPTKPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAG-REPKGAG 65
+ + PR +KP R PG E S LE G R++ A PG G R P+ AG
Sbjct: 16 VVSPPRPARLKPD---RAGPGVENGPSPGLERQTHGAH-GGRRQVAAPGEQGARSPENAG 71
Query: 66 RR---------RRPGAPRG 75
RR RPG+ G
Sbjct: 72 RRSGSETAGKHERPGSGGG 90
>gi|239756862 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 33.1 bits (74), Expect = 0.049
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 1 MGSARFIPTKPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPG--RAG 58
+G R P +K + R + GR D + AR VG R PG R G
Sbjct: 61 LGWGRREPAVDWVGLVKALSSDRLSAGRRVDRRHDSDPARLAGIVGV-DRIGCPGELRRG 119
Query: 59 REPKGAGRRRRPGAPRGP 76
+GAGRR PG PR P
Sbjct: 120 VRGRGAGRREVPGNPRSP 137
>gi|239746493 PREDICTED: hypothetical protein XP_002343745 [Homo
sapiens]
Length = 529
Score = 32.7 bits (73), Expect = 0.064
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 9 TKPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQ-RYARPGRAG--REP---- 61
T+ A++P F RR P + GAR++R G+ RPGR+G R P
Sbjct: 99 TRLAPCALRPDRFPRRFPEPPPQPAPPAGGARKERDAGAADLSPRRPGRSGVARRPGDAR 158
Query: 62 -KGAGRRRR---PGAPRGP 76
+ AG RR PG GP
Sbjct: 159 TQSAGPERRAHLPGPGAGP 177
>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 20 AFSRRNPGREKDGSASLE--GARRQRRVGSRQRYARPGRAGREPKGAGRRRRPGAPR 74
A RR + G+A L G R G R+R + R GR +GAGR R+PG R
Sbjct: 95 AAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDR 151
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 24 RNPGREKDGSASLEGARRQRRVGSRQRYARP------GRAGREPKGAGRRRRPGAPRGP 76
R GR + GA R R ARP R G G R PG P GP
Sbjct: 139 RGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGP 197
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 20 AFSRRNPGREKDGSASLE--GARRQRRVGSRQRYARPGRAGREPKGAGRRRRPGAPR 74
A RR + G+A L G R G R+R + R GR +GAGR R+PG R
Sbjct: 98 AAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDR 154
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 24 RNPGREKDGSASLEGARRQRRVGSRQRYARP------GRAGREPKGAGRRRRPGAPRGP 76
R GR + GA R R ARP R G G R PG P GP
Sbjct: 142 RGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGP 200
>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 20 AFSRRNPGREKDGSASLE--GARRQRRVGSRQRYARPGRAGREPKGAGRRRRPGAPR 74
A RR + G+A L G R G R+R + R GR +GAGR R+PG R
Sbjct: 98 AAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARKPGPDR 154
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 24 RNPGREKDGSASLEGARRQRRVGSRQRYARP------GRAGREPKGAGRRRRPGAPRGP 76
R GR + GA R R ARP R G G R PG P GP
Sbjct: 142 RGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPVPGGPAGP 200
>gi|92859871 SMAD family member 6 isoform 1 [Homo sapiens]
Length = 496
Score = 31.6 bits (70), Expect = 0.14
Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 22/80 (27%)
Query: 22 SRRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAG----------------------R 59
SR P RE+ GS G +GSR A R G R
Sbjct: 16 SRVVPDREEGGSGGGGGGDEDGSLGSRAEPAPRAREGGGCGRSEVRPVAPRRPRDAVGQR 75
Query: 60 EPKGAGRRRRPGAPRGPFTQ 79
+GAGRRRR G P P ++
Sbjct: 76 GAQGAGRRRRAGGPPRPMSE 95
>gi|124494251 BCL2-associated athanogene isoform 1L [Homo sapiens]
Length = 345
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 38 GARRQR----RVGSRQRYARPGRAGREPKGAGRRRRPGAPRGP 76
GARR R R+GSR R RPGR R+ + +R P + R P
Sbjct: 6 GARRPRGDRERLGSRLRALRPGREPRQSEPPAQRGPPPSGRPP 48
>gi|29126247 basic helix-loop-helix family, member a15 [Homo
sapiens]
Length = 189
Score = 31.6 bits (70), Expect = 0.14
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 52 ARPGRAGREPKGAGRRRRPGAPRGP 76
+RP RA G GRRRRPG P GP
Sbjct: 43 SRPARAAARAPGEGRRRRPG-PSGP 66
>gi|218749848 family with sequence similarity 38, member A [Homo
sapiens]
Length = 2090
Score = 31.6 bits (70), Expect = 0.14
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 23 RRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAGREPKGAGRRRRPG 71
R+ G + G+A++E R+ G ++ A GR R + GR R G
Sbjct: 1445 RKKEGPARKGAAAIEAEDREEEEGEEEKEAPTGREKRPSRSGGRVRAAG 1493
>gi|122937211 KIAA0368 protein [Homo sapiens]
Length = 2017
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 24 RNPGREKDGSASLEGARRQRRV--GSRQRY---ARPGRAGREPKGAGRRRRPGAPRGP 76
R P R S +L RR +R G R R ARP AG P G RPG P P
Sbjct: 112 RGPARRTPRSTALTSRRRAQRPRHGDRLRLRSEARPRAAGDWPCARGGAVRPGRPHRP 169
>gi|14719402 homolog of yeast ribosome biogenesis regulatory protein
RRS1 [Homo sapiens]
Length = 365
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 23 RRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAGREPKGAGRRRRPGAPR 74
R+ PG ++ G +G +R+ +G + PG G+ G +RPG R
Sbjct: 316 RQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKGG----QRPGGKR 363
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 2 GSARFIPTKPRTVAIKPSAFSRRNPGREKDGSAS----LEGARRQRRVGSRQRYARPGRA 57
G R + P + A P R+P GS S + ARR R + R+A P
Sbjct: 148 GRTRRVVAAPESAAAAPG----RSPSPADPGSTSSATRVPRARRSSRRALQPRHAAPDAP 203
Query: 58 GREPKGAGRRRRPGAPRGP 76
G + + P APR P
Sbjct: 204 GAPSRSTSQATPPPAPRFP 222
>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
sapiens]
Length = 459
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 2 GSARFIPTKPRTVAIKPSAFSRRNPGREKDGSAS----LEGARRQRRVGSRQRYARPGRA 57
G R + P + A P R+P GS S + ARR R + R+A P
Sbjct: 148 GRTRRVVAAPESAAAAPG----RSPSPADPGSTSSATRVPRARRSSRRALQPRHAAPDAP 203
Query: 58 GREPKGAGRRRRPGAPRGP 76
G + + P APR P
Sbjct: 204 GAPSRSTSQATPPPAPRFP 222
>gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo
sapiens]
Length = 351
Score = 30.8 bits (68), Expect = 0.24
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 10 KPRTVAIKPSAFSRRNPGREKDGSASLEGARRQRRVGSRQRYARPGRAGREPKGAGRR-R 68
+PR + ++ F +PG + S E ARR R R R A P RA G+GRR R
Sbjct: 223 RPRRLRLRSQRFRPPSPGAAR--SQLPETARRPR---PRPRPALPRRAREPQPGSGRRCR 277
Query: 69 RPGAPRGP 76
R A R P
Sbjct: 278 RDTAVRWP 285
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 30.8 bits (68), Expect = 0.24
Identities = 26/78 (33%), Positives = 29/78 (37%), Gaps = 17/78 (21%)
Query: 5 RFIPTKPRTVAIKPSAFSRRNPGREKDGSASLEGARR-----------QRRVGSRQRYAR 53
R P+ PR + PS P R + GS S RR R SR YAR
Sbjct: 67 RASPSPPRGRRVSPS------PPRARRGSPSPPRGRRLFPPGPAGFRGSSRGESRADYAR 120
Query: 54 PGRAGREPKGAGRRRRPG 71
GR RRR PG
Sbjct: 121 DGRGDHPGDSGSRRRSPG 138
>gi|240849329 hypothetical protein LOC728392 [Homo sapiens]
Length = 119
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 26 PGREKDGSASLEGARRQRRVGSRQRYARPGRAGREPKGAGR 66
P SAS G + RR G R A+ GRAG+ PK A R
Sbjct: 35 PAARGPRSASAAGKKAGRRAGGR---AQGGRAGQPPKAASR 72
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,889,748
Number of Sequences: 37866
Number of extensions: 192654
Number of successful extensions: 1562
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 1382
Number of HSP's gapped (non-prelim): 299
length of query: 79
length of database: 18,247,518
effective HSP length: 51
effective length of query: 28
effective length of database: 16,316,352
effective search space: 456857856
effective search space used: 456857856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.